Lag0032627 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0032627
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	nuclear pore complex protein NUP58-like
Location	chr11: 35421082 .. 35423563 (-)
RNA-Seq Expression	Lag0032627
Synteny	Lag0032627

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGAGCGATTTTCAAGCGGGAGGAGGAGAAGATTTTTCCGGCCGATTTTCGGGGGAGGCTCGTCGTCGATAGGGGGTAGGTAATGTGATACAACAGAGTGTGAAGGGAGACTTTTCAAACTCCTTTACGAAGAAGGCCTCAAACGCAAGTGTGAAAGGGAGTATCGAGATGAAAGTCAGAGGTTGGATCAGTGTAGTCGCCTCTACGATTCTTCAGTCTCTAACGATGGGTTTGAGCTTGATGCCAATCAAATTGTTCAGGTTGCTTTTGACATTTATCAGATTGCTTTTCATCTCCTTTCGATTTTACTTCGAATAATTTTTGGAAAATTGAGCATACTAATAATATATTTGAGTGTACCGAGATATGGATACGAAAATGCTTGCAGCTTCGATCTATTTTTCACATTTATGTGGCTACAATGTCGTATGAGTAATTGACGGTTGGCATGGCTTGTTTGGCATCTTAGGTTCACATGTGATATTCGATAGTATACCTAAGGCTTGCTTCTTATCTTTTCTTTAACATTTGGGATTATTTAGTTGATCTTTTTTTACAACTCCCTTTTGTCTTGGGATTAATTTAATACTTGTTGTATGGGAAGTGAAAAAAGTTCTTCAATCGTAAGAAGATGCTACATATAGGTTTTCAAATTAGTTTGGTTCGTTGGATTTTTTAATTTCAAGCTTCCTAGAATTTTTCTAACGTTTTTAGAGGTATTTTCTCTCTCATAAACTCTGATTTTAATTTTAAACGTTAGGAACATCTTAGACAGTTTATTGGGGGCATTTTTGTCTTCTATAAATAGGGATTTATTAATTATAAAATCGTTTAGCCATTTATTTAATTTCTAAACTTGTTAGCCATTTTTCAAGCCAACTATTTATTTTTATCCATTTTTCTTGTTGCCTCTTGAAACTTTTACTTGGAAAGGCTTATAAGTTGGTTTATGAGCTTAGCCTTGAGGTTGGGTGTGTATGTACTTTTGGTAGGAATGGATAATTAAAACTTCAATCTCAAAGAAATGAGTTGATGTTTTAACGGTTGAGTTAAGCTCATATGGATAAATAAAAGTATTTGATTGAATATGATATCAAAGTTAAGATATAAGAAAATTAAAAGAAAAGAAAGAAAATGTATAAGAAAAATGAGCACTATTATATTATATAAATGTCTTATTAAACAATTAACAAACACTATCCAATTTTGAATGAAGCCCAAGTCTAACTAAGCCCTTATTTTTGTTCACAGTGAAAATGAAACTTATAAAAGCTCACTATTTTGGCTTTAAGTCATAGAGTTGGTTTGTGCTAACTTTAGCATGGTTCAATCAATTAAGACATAATATTCTCTATCAAAATGTAGAGATTTGAATCTTCAACATCACATATTGTTGAATCCAAAAAATTAGAAATACTTTTGCTAATATGAACGTACCTCAATGATCAAGGTATCTTTAATTTCTCAAATAGGTCATAGGATCGAATTCTCACCTTACATGTAATCTAATATTCTTAAAATATATGTATATACTTTTGAAATATTAGTCAATTTTTAAAACCGCGATAAGTTTGAAATCCATTATTTCCAGAAGCATGCTTCTCACGTGCTGGTTAGTTAGTCTCACCTCACAGTATAAAAACAGTCTTATGGCTCTGTAGTTGGTAACTTGTAGAAAACAGAGTCCTTTGTACTTGGAAACTCTCCTGCCTTGTGTAATCCCTTTCTTGCCTTCGTTGATGTGAATAAAGCTATCTCCTGATGTTTGAAGAGTGGATGTACACCCATTGGATGGAACCACTATAAATCATTTTGTGTTTTCTTCATCCTCTTCTTCGATTCCCTTTTGATCTGGGGCTTAATTGAACTTGAGTATTATTGTTGAATTATCCTAATTGCTCAACAAACCATCCAAAAAAAAAGTGAGTTCAACAACGTTAGGGGTGGGGAAATTCGAACTTTTGATCTCTTAGTTGAGGGTACATGTAAACGCTAAGGTATGCTCACTGTTGATGGTCAAATTTGGTCGGGAGGAACTCACCTGCCCTTCACGTGCCACCAACGGTAAATTTTTTTGTGAGGGGGGAAGACGCGGCTTGCAAGACAGTAAACCTGCACACCGGTGTGGTTCTAGCCACACCGCCTCCGATGCTTAAGTCAGAAAACGGAAGGAAGAGCTAGAGAGCAAGGGAGAGAGAGTAGAGTATAACGTTTGGGTCCCCTTCTTTAGTGGCGAAGAGGGGTTTAAATACATTCTCATGCTCCTAGGGTTTTTAGGAATTCGGAGGCGTTTTGGGACAAACCAAGCGGGACCGGAGCGGCCAGAGGCAGCAGGGACCAAACGGAGGCGACCGAGCTCGGCCCGTGCAAGCGAGCCGACCATATTGGCCTGACCCTTTGGTCTGGTCTTCTTCTGGGTCGATTTCCTGGTCTATCCCTGCCTGGTTGTCCTCGGCAGCTTCTTGTGCTTCGAAGTAG

mRNA sequence

ATGAGCGAGCGATTTTCAAGCGGGAGGAGGAGAAGATTTTTCCGGCCGATTTTCGGGGGAGGCTCGTCGTCGATAGGGGGTAGGGAGTATCGAGATGAAAGTCAGAGGTTGGATCAGTGTAGTCGCCTCTACGATTCTTCAGTCTCTAACGATGGGTTTGAGCTTGATGCCAATCAAATTGTTCAGGAATTCGGAGGCGTTTTGGGACAAACCAAGCGGGACCGGAGCGGCCAGAGGCAGCAGGGACCAAACGGAGGCGACCGAGCTCGGCCCGTGCAAGCGAGCCGACCATATTGGCCTGACCCTTTGGTCTGGTCTTCTTCTGGGTCGATTTCCTGGTCTATCCCTGCCTGGTTGTCCTCGGCAGCTTCTTGTGCTTCGAAGTAG

Coding sequence (CDS)

ATGAGCGAGCGATTTTCAAGCGGGAGGAGGAGAAGATTTTTCCGGCCGATTTTCGGGGGAGGCTCGTCGTCGATAGGGGGTAGGGAGTATCGAGATGAAAGTCAGAGGTTGGATCAGTGTAGTCGCCTCTACGATTCTTCAGTCTCTAACGATGGGTTTGAGCTTGATGCCAATCAAATTGTTCAGGAATTCGGAGGCGTTTTGGGACAAACCAAGCGGGACCGGAGCGGCCAGAGGCAGCAGGGACCAAACGGAGGCGACCGAGCTCGGCCCGTGCAAGCGAGCCGACCATATTGGCCTGACCCTTTGGTCTGGTCTTCTTCTGGGTCGATTTCCTGGTCTATCCCTGCCTGGTTGTCCTCGGCAGCTTCTTGTGCTTCGAAGTAG

Protein sequence

MSERFSSGRRRRFFRPIFGGGSSSIGGREYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDRSGQRQQGPNGGDRARPVQASRPYWPDPLVWSSSGSISWSIPAWLSSAASCASK

Homology

[Close]

BLAST of Lag0032627 vs. NCBI nr
Match: XP_008440231.1 (PREDICTED: nuclear pore complex protein NUP58 isoform X2 [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 9.9e-11
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 29 EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDR 76
          EYRDESQRLDQCSRLYDSSVSNDGFELDA++IVQE GG+   T+  +
Sbjct: 10 EYRDESQRLDQCSRLYDSSVSNDGFELDASRIVQELGGISASTEHQK 56

[Close]

BLAST of Lag0032627 vs. NCBI nr
Match: XP_008440230.1 (PREDICTED: nuclear pore complex protein NUP58 isoform X1 [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 9.9e-11
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 29  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDR 76
           EYRDESQRLDQCSRLYDSSVSNDGFELDA++IVQE GG+   T+  +
Sbjct: 104 EYRDESQRLDQCSRLYDSSVSNDGFELDASRIVQELGGISASTEHQK 150

[Close]

BLAST of Lag0032627 vs. NCBI nr
Match: XP_038882193.1 (nuclear pore complex protein NUP58 [Benincasa hispida])

HSP 1 Score: 77.4 bits (189), Expect = 9.9e-11
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 29  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDR 76
           EYRDESQRLDQCSRLYDSSVSNDGFELDA++IVQE GG+   T+  +
Sbjct: 105 EYRDESQRLDQCSRLYDSSVSNDGFELDASRIVQELGGISASTEHQK 151

[Close]

BLAST of Lag0032627 vs. NCBI nr
Match: TYK12916.1 (nuclear pore complex protein NUP58 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 9.9e-11
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 29  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDR 76
           EYRDESQRLDQCSRLYDSSVSNDGFELDA++IVQE GG+   T+  +
Sbjct: 104 EYRDESQRLDQCSRLYDSSVSNDGFELDASRIVQELGGISASTEHQK 150

[Close]

BLAST of Lag0032627 vs. NCBI nr
Match: OVA15453.1 (hypothetical protein BVC80_1229g36 [Macleaya cordata])

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-10
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 29 EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDRS 77
          EYRDESQRLDQCSRLYDSSVSNDGFELDA+ IVQE GG+    +R+++
Sbjct: 7  EYRDESQRLDQCSRLYDSSVSNDGFELDASHIVQELGGISTAMEREKA 54

[Close]

BLAST of Lag0032627 vs. ExPASy Swiss-Prot
Match: Q8RWH9 (Nuclear pore complex protein NUP58 OS=Arabidopsis thaliana OX=3702 GN=NUP58 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-10
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 29  EYRDESQRLDQCSRLYDSSVSNDGFELDANQIVQEFGGVLGQTKRDR 76
           E+R ESQRLDQCSRLYDSSVS++GFE DA++IVQE GG+   T  DR
Sbjct: 129 EHRSESQRLDQCSRLYDSSVSSEGFEFDASRIVQELGGI--NTAMDR 173

The following BLAST results are available for this feature:

BLAST of Lag0032627 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008440231.1	9.9e-11	76.60	PREDICTED: nuclear pore complex protein NUP58 isoform X2 [Cucumis melo]	[more]
XP_008440230.1	9.9e-11	76.60	PREDICTED: nuclear pore complex protein NUP58 isoform X1 [Cucumis melo]	[more]
XP_038882193.1	9.9e-11	76.60	nuclear pore complex protein NUP58 [Benincasa hispida]	[more]
TYK12916.1	9.9e-11	76.60	nuclear pore complex protein NUP58 isoform X1 [Cucumis melo var. makuwa]	[more]
OVA15453.1	1.7e-10	75.00	hypothetical protein BVC80_1229g36 [Macleaya cordata]	[more]

BLAST of Lag0032627 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWH9	3.0e-10	70.21	Nuclear pore complex protein NUP58 OS=Arabidopsis thaliana OX=3702 GN=NUP58 PE=1...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..97
IPR024882	Nucleoporin p58/p45	PANTHER	PTHR13437	NUCLEOPORIN P58/P45 NUCLEOPORIN-LIKE PROTEIN 1	coord: 28..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0032627.1	Lag0032627.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051028	mRNA transport
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0005643	nuclear pore
molecular_function	GO:0008139	nuclear localization sequence binding
molecular_function	GO:0017056	structural constituent of nuclear pore