Lag0032571 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032571
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr11: 34809072 .. 34809641 (+)
RNA-Seq ExpressionLag0032571
SyntenyLag0032571
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACACAAAAACAAAAGGGCTAAAGGTGGATCATCTTCAATTCCACCACTCGGACCACGGACCGGTTATTCTGGAGATTAATTGGGAAAAGCAGTTAAAGCAAGGGAGGCCTAAGAAGAGATCTATCAAATTTGAAGGTAGCTGGGCTAAGCATGATGGCAGCAAAACAGCACTGAAAGGCTTCTAAAACCATTCTGTAGAAGCTAATAATTTCAATTTCAGTGCAAAGATCCAAGGGGGCATGGAAGCAATGAACAGATGGAACAAAACTAGACTCCAAGGTTCTATTCAAGAAGCCATCAAAAGAAAGGAAATGGAGATCTCTAGCCTATCAAACCCGAGTAACAAAGAAAAGTTTCTGAAGCTTAGCCAACTTGAAAAAGATCTCGAGACTTTACTAGAAGAAGAGGAACATTACTGGAAAATGAGATTAAGGGAAGGCTGGTTAAAGAAAGGTGATAGGAACACCAAGTGGTTCCATTCCAAGGCCTCTCATAGGAAAAGAAAGAATGAGATAAAGGGGATACTTACAAGGATGGAATCTGGGAAGAAAGTGAGCAATGGATAG

mRNA sequence

ATGCACACAAAAACAAAAGGGCTAAAGGTGGATCATCTTCAATTCCACCACTCGGACCACGGACCGGTTATTCTGGAGATTAATTGGGAAAAGCAGTTAAAGCAAGGGAGGCCTAAGAAGAGATCTATCAAATTTGAAGAAGCTAATAATTTCAATTTCAGTGCAAAGATCCAAGGGGGCATGGAAGCAATGAACAGATGGAACAAAACTAGACTCCAAGGTTCTATTCAAGAAGCCATCAAAAGAAAGGAAATGGAGATCTCTAGCCTATCAAACCCGAGTAACAAAGAAAAGTTTCTGAAGCTTAGCCAACTTGAAAAAGATCTCGAGACTTTACTAGAAGAAGAGGAACATTACTGGAAAATGAGATTAAGGGAAGGCTGGTTAAAGAAAGGTGATAGGAACACCAAGTGGTTCCATTCCAAGGCCTCTCATAGGAAAAGAAAGAATGAGATAAAGGGGATACTTACAAGGATGGAATCTGGGAAGAAAGTGAGCAATGGATAG

Coding sequence (CDS)

ATGCACACAAAAACAAAAGGGCTAAAGGTGGATCATCTTCAATTCCACCACTCGGACCACGGACCGGTTATTCTGGAGATTAATTGGGAAAAGCAGTTAAAGCAAGGGAGGCCTAAGAAGAGATCTATCAAATTTGAAGAAGCTAATAATTTCAATTTCAGTGCAAAGATCCAAGGGGGCATGGAAGCAATGAACAGATGGAACAAAACTAGACTCCAAGGTTCTATTCAAGAAGCCATCAAAAGAAAGGAAATGGAGATCTCTAGCCTATCAAACCCGAGTAACAAAGAAAAGTTTCTGAAGCTTAGCCAACTTGAAAAAGATCTCGAGACTTTACTAGAAGAAGAGGAACATTACTGGAAAATGAGATTAAGGGAAGGCTGGTTAAAGAAAGGTGATAGGAACACCAAGTGGTTCCATTCCAAGGCCTCTCATAGGAAAAGAAAGAATGAGATAAAGGGGATACTTACAAGGATGGAATCTGGGAAGAAAGTGAGCAATGGATAG

Protein sequence

MHTKTKGLKVDHLQFHHSDHGPVILEINWEKQLKQGRPKKRSIKFEEANNFNFSAKIQGGMEAMNRWNKTRLQGSIQEAIKRKEMEISSLSNPSNKEKFLKLSQLEKDLETLLEEEEHYWKMRLREGWLKKGDRNTKWFHSKASHRKRKNEIKGILTRMESGKKVSNG
Homology
BLAST of Lag0032571 vs. NCBI nr
Match: MCH81570.1 (hypothetical protein [Trifolium medium])

HSP 1 Score: 79.0 bits (193), Expect = 4.5e-11
Identity = 54/168 (32.14%), Postives = 89/168 (52.98%), Query Frame = 0

Query: 11  DHLQFHHSDHGPVILEINWEKQLKQGRPKKRSIKFEEA-----------------NNFNF 70
           +HL  + SDH P++LE +     +    K  S KFE+                   N N 
Sbjct: 44  NHLARYKSDHCPLLLEFSPTLCNRSNTNKYFSKKFEQIWTTDEQHTNIVKEAWQYQNVNL 103

Query: 71  SAKIQGGMEAMNRWNKTRLQGSIQEAIKRKEMEISSL-SNPSNKEKFLKLSQLEKDLETL 130
             K+Q  + A++ W +    G I + IK+ + ++ +L  + +++    ++   E++L+ L
Sbjct: 104 EKKLQHTLNALHTWGRITF-GIIPKRIKKVQHDLHNLQQHQTDQSTIQQIHNKEQELDDL 163

Query: 131 LEEEEHYWKMRLREGWLKKGDRNTKWFHSKASHRKRKNEIKGILTRME 161
           LE+EE +W  R R  WL  GD+NTK+FH KAS R+RKN+I+GI   M+
Sbjct: 164 LEKEEMWWSQRSRALWLTHGDKNTKFFHQKASQRRRKNKIEGIKDPMD 210

BLAST of Lag0032571 vs. NCBI nr
Match: XP_030924668.1 (uncharacterized protein LOC115951644 [Quercus lobata])

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-10
Identity = 53/173 (30.64%), Postives = 91/173 (52.60%), Query Frame = 0

Query: 4   KTKGLKVDHLQFHHSDHGPVILEINWE--KQLKQGRP--------KKRSI---------- 63
           + K L + HL   HSDH P++L  + E  +  K+GRP        + RS           
Sbjct: 169 RLKDLGIHHLDAFHSDHKPILLSPDSELNRFYKKGRPFRFEAMWLRDRSCEEVVCDSWGK 228

Query: 64  KFEEANNFNFSAKIQGGMEAMNRWNKTRLQGSIQEAIKRKEMEIS-SLSNPSNKEKFLKL 123
           +  +A  + F++KI      +  WNK ++ G ++ ++K+K  ++     N   ++  +++
Sbjct: 229 EMAQATAWGFNSKILACQSNLRVWNK-KIFGHVRNSLKKKVEDLKFEEENGGYRKNPVRI 288

Query: 124 SQLEKDLETLLEEEEHYWKMRLREGWLKKGDRNTKWFHSKASHRKRKNEIKGI 156
             L  +++ L  +EE  WK R R  WLK+GDRNTK+FH +A+ R R+N I G+
Sbjct: 289 QALRDEIQKLQAKEECMWKQRSRNRWLKEGDRNTKYFHCRANQRNRRNLITGL 340

BLAST of Lag0032571 vs. NCBI nr
Match: XP_030925054.1 (uncharacterized protein LOC115952115 [Quercus lobata])

HSP 1 Score: 75.9 bits (185), Expect = 3.8e-10
Identity = 52/168 (30.95%), Postives = 86/168 (51.19%), Query Frame = 0

Query: 9   KVDHLQFHHSDHGPVILEINWEKQ--LKQGRP--------KKRS----------IKFEEA 68
           ++ HL   HSDH P++L  + E+    K+GRP        K RS          +   +A
Sbjct: 340 RIHHLDAFHSDHKPILLSPDLEQNRFYKKGRPFWFEAMWLKDRSCEEVIRDSWGVGMVQA 399

Query: 69  NNFNFSAKIQGGMEAMNRWNKTRLQGSIQEAIKRKEMEISSLSNPSN-KEKFLKLSQLEK 128
             + F++KI      +  WNK +  G ++ ++K+K  E+ S       +    ++ +L  
Sbjct: 400 TAWGFNSKISTCQTNLRVWNK-KTFGHVRHSLKKKLAELKSEEESGGYRNNPFRIQELRD 459

Query: 129 DLETLLEEEEHYWKMRLREGWLKKGDRNTKWFHSKASHRKRKNEIKGI 156
           D++ L   EE  WK R R  WLK+GD+NT++FH +A+ R R+N I G+
Sbjct: 460 DIQQLQAREECMWKQRSRNRWLKEGDKNTRYFHCRANQRNRRNLITGL 506

BLAST of Lag0032571 vs. NCBI nr
Match: XP_023920265.1 (uncharacterized protein LOC112031795 [Quercus suber])

HSP 1 Score: 75.5 bits (184), Expect = 4.9e-10
Identity = 59/174 (33.91%), Postives = 86/174 (49.43%), Query Frame = 0

Query: 9   KVDHLQFHHSDHGPVILEINWEKQLKQGRPKKRSIKFEEA-------------------- 68
           +V HL  H SDH P++L++      +Q R K  S KFEEA                    
Sbjct: 213 RVTHLSTHASDHLPLLLQVQSFNHQRQRREK--SFKFEEAWLLKADCEDTVKEAWGSDNS 272

Query: 69  ---NNFNFSAKIQGGMEAMNRWNKTRLQGSIQEAIKRKEMEISSLS----NPSNKEKFLK 128
                 +   KIQ     +  W        + EAIK  +  +  L+    + ++K +FL 
Sbjct: 273 DSHGLESIKQKIQRCGAELLSWGSAWTNPEV-EAIKETQKRLDRLNEEEISETSKAEFLD 332

Query: 129 LSQLEKDLETLLEEEEHYWKMRLREGWLKKGDRNTKWFHSKASHRKRKNEIKGI 156
           LS   K ++ LL+++E +W  R R  WLK GD+NTK+FHSKA+ R+RKN I+GI
Sbjct: 333 LS---KRMDELLQKQEIFWAQRSRISWLKHGDKNTKFFHSKATQRRRKNHIRGI 380

BLAST of Lag0032571 vs. NCBI nr
Match: XP_030502781.1 (uncharacterized protein LOC115717953 [Cannabis sativa])

HSP 1 Score: 75.5 bits (184), Expect = 4.9e-10
Identity = 56/171 (32.75%), Postives = 85/171 (49.71%), Query Frame = 0

Query: 9   KVDHLQFHHSDHGPVILEINWEKQLKQGRPKKRS--------IKFEEANNFNFSAKIQGG 68
           KV HL   +SDH P++L +N          K RS         + EE  N   SA ++  
Sbjct: 86  KVSHLDRTNSDHCPLLLTVNDSSHSTPNTVKWRSRFHYESAWAEEEECTNIVHSAWLRNE 145

Query: 69  M---------------EAMNRWNKTRLQGSIQEAIKRKEMEISSLSNPSNKEKFLKLSQL 128
                            A+ +WN+ R +  + + +     +IS L+  +N   + +L  L
Sbjct: 146 PIKHTQDLKNRLGDCGVALQKWNR-RKKRYMTKQLNEYAEKISKLTQSTNTTDWQQLQML 205

Query: 129 EKDLETLLEEEEHYWKMRLREGWLKKGDRNTKWFHSKASHRKRKNEIKGIL 157
           E     LL++EE +W+ R R  WLK+GD+NTK+FH KAS+RK KN IKG++
Sbjct: 206 EHKQNLLLDKEESFWRQRSRAIWLKEGDKNTKFFHRKASNRKAKNTIKGLV 255

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
MCH81570.14.5e-1132.14hypothetical protein [Trifolium medium][more]
XP_030924668.11.7e-1030.64uncharacterized protein LOC115951644 [Quercus lobata][more]
XP_030925054.13.8e-1030.95uncharacterized protein LOC115952115 [Quercus lobata][more]
XP_023920265.14.9e-1033.91uncharacterized protein LOC112031795 [Quercus suber][more]
XP_030502781.14.9e-1032.75uncharacterized protein LOC115717953 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 95..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032571.1Lag0032571.1mRNA