Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGTTTCATTGATGGTACTCCGGCTCCTCCGAAGTTTTTGGATCCCGCCCACACTCAACTAAATCCTCTGTTTACTGTATGGCAAAAGTATAATCGGACACTGATGAGTTGGATTTATTCCTCTTTGAATGAAGACGAATTAGGTGAAATAATAGGATGTTCTTCTGCTTATGAAATCTGGGATCATTTGCGTATTGTTTATGAATCGTCTTCTACTGCACGAATTATGAGCTTAAGGTCTCAGCTTCAGAAAATCAAGAAGGATGGTCTGTCGGTGTCTCAGTACCTTGCCCAAATCAAAGATATAGCCGACAAATTCTCCGCCATTGGTGAACCACTGTCGTATCTTGACCATCTCGGCTATATCCTTGAGGGGCTCGAGTCTGAGTACAATGCTTTCGTCACCTCTGTTCACAACAGAACAAACCGCCCTTCCCTTGCCGACCTTCGGAGTCTTCTCATTGCTTATGATGCTCGTCTGGAAAAACAAACTTCGGTGGACCAACTGAACCTGATTCAGGCCAATCTTGCAAACTTGTCTTCCAATCCTTCGTCACAACCTAAGCGGTTTCAGCGTTCTTCAAATCCTCCTAAACCTAATTCAAATTCGAGGCAACCTTCCCCTTTTCCCTTTCCACCCAATTTCTCTTTTTCCCCTAGTCCTGGTGTGTTGGGTCGGCCTCAGACTTCTCCTCGTCCTCCCAGATGGCCTTCTAATAATCAAAACCGTCCTCAGTGTCATATTTGCGGCAAGTTTGGACACACAACTCTTGTGTGTTATAATCGTCACAATCCTGTTTATCAAGCTCCACAAGTTTCTTCCCCTCCACAAGCCTTTTTTAACCAATTTTCAGCTTCCTCTGCCCCTGTTAGTCAATCAGTCCCTGTTTCCGCCTCTTCATCCACCTTTATCCCTCTCACATCCCACCCTGATGAATCCTGGTTCATGGACTCGGGTGCCACTCATCACATGACCCCCGACTTCAATACCATTCAGCATCCATCCCCATACTATGGCAGTGAGTAG
mRNA sequence
ATGGAGAGTTTCATTGATGGTACTCCGGCTCCTCCGAAGTTTTTGGATCCCGCCCACACTCAACTAAATCCTCTGTTTACTGTATGGCAAAAGTATAATCGGACACTGATGAGTTGGATTTATTCCTCTTTGAATGAAGACGAATTAGGTGAAATAATAGGATGTTCTTCTGCTTATGAAATCTGGGATCATTTGCGTATTGTTTATGAATCGTCTTCTACTGCACGAATTATGAGCTTAAGGTCTCAGCTTCAGAAAATCAAGAAGGATGGTCTGTCGGTGTCTCAGTACCTTGCCCAAATCAAAGATATAGCCGACAAATTCTCCGCCATTGGTGAACCACTGTCGTATCTTGACCATCTCGGCTATATCCTTGAGGGGCTCGAGTCTGAGTACAATGCTTTCGTCACCTCTGTTCACAACAGAACAAACCGCCCTTCCCTTGCCGACCTTCGGAGTCTTCTCATTGCTTATGATGCTCGTCTGGAAAAACAAACTTCGGTGGACCAACTGAACCTGATTCAGGCCAATCTTGCAAACTTGTCTTCCAATCCTTCGTCACAACCTAAGCGGTTTCAGCGTTCTTCAAATCCTCCTAAACCTAATTCAAATTCGAGGCAACCTTCCCCTTTTCCCTTTCCACCCAATTTCTCTTTTTCCCCTAGTCCTGGTGTGTTGGGTCGGCCTCAGACTTCTCCTCGTCCTCCCAGATGGCCTTCTAATAATCAAAACCGTCCTCAGTGTCATATTTGCGGCAAGTTTGGACACACAACTCTTGTGTGTTATAATCGTCACAATCCTGTTTATCAAGCTCCACAAGTTTCTTCCCCTCCACAAGCCTTTTTTAACCAATTTTCAGCTTCCTCTGCCCCTGTTAGTCAATCAGTCCCTGTTTCCGCCTCTTCATCCACCTTTATCCCTCTCACATCCCACCCTGATGAATCCTGGTTCATGGACTCGGGTGCCACTCATCACATGACCCCCGACTTCAATACCATTCAGCATCCATCCCCATACTATGGCAGTGAGTAG
Coding sequence (CDS)
ATGGAGAGTTTCATTGATGGTACTCCGGCTCCTCCGAAGTTTTTGGATCCCGCCCACACTCAACTAAATCCTCTGTTTACTGTATGGCAAAAGTATAATCGGACACTGATGAGTTGGATTTATTCCTCTTTGAATGAAGACGAATTAGGTGAAATAATAGGATGTTCTTCTGCTTATGAAATCTGGGATCATTTGCGTATTGTTTATGAATCGTCTTCTACTGCACGAATTATGAGCTTAAGGTCTCAGCTTCAGAAAATCAAGAAGGATGGTCTGTCGGTGTCTCAGTACCTTGCCCAAATCAAAGATATAGCCGACAAATTCTCCGCCATTGGTGAACCACTGTCGTATCTTGACCATCTCGGCTATATCCTTGAGGGGCTCGAGTCTGAGTACAATGCTTTCGTCACCTCTGTTCACAACAGAACAAACCGCCCTTCCCTTGCCGACCTTCGGAGTCTTCTCATTGCTTATGATGCTCGTCTGGAAAAACAAACTTCGGTGGACCAACTGAACCTGATTCAGGCCAATCTTGCAAACTTGTCTTCCAATCCTTCGTCACAACCTAAGCGGTTTCAGCGTTCTTCAAATCCTCCTAAACCTAATTCAAATTCGAGGCAACCTTCCCCTTTTCCCTTTCCACCCAATTTCTCTTTTTCCCCTAGTCCTGGTGTGTTGGGTCGGCCTCAGACTTCTCCTCGTCCTCCCAGATGGCCTTCTAATAATCAAAACCGTCCTCAGTGTCATATTTGCGGCAAGTTTGGACACACAACTCTTGTGTGTTATAATCGTCACAATCCTGTTTATCAAGCTCCACAAGTTTCTTCCCCTCCACAAGCCTTTTTTAACCAATTTTCAGCTTCCTCTGCCCCTGTTAGTCAATCAGTCCCTGTTTCCGCCTCTTCATCCACCTTTATCCCTCTCACATCCCACCCTGATGAATCCTGGTTCATGGACTCGGGTGCCACTCATCACATGACCCCCGACTTCAATACCATTCAGCATCCATCCCCATACTATGGCAGTGAGTAG
Protein sequence
MESFIDGTPAPPKFLDPAHTQLNPLFTVWQKYNRTLMSWIYSSLNEDELGEIIGCSSAYEIWDHLRIVYESSSTARIMSLRSQLQKIKKDGLSVSQYLAQIKDIADKFSAIGEPLSYLDHLGYILEGLESEYNAFVTSVHNRTNRPSLADLRSLLIAYDARLEKQTSVDQLNLIQANLANLSSNPSSQPKRFQRSSNPPKPNSNSRQPSPFPFPPNFSFSPSPGVLGRPQTSPRPPRWPSNNQNRPQCHICGKFGHTTLVCYNRHNPVYQAPQVSSPPQAFFNQFSASSAPVSQSVPVSASSSTFIPLTSHPDESWFMDSGATHHMTPDFNTIQHPSPYYGSE
Homology
BLAST of Lag0032565 vs. NCBI nr
Match:
XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])
HSP 1 Score: 309.7 bits (792), Expect = 3.2e-80
Identity = 170/344 (49.42%), Postives = 230/344 (66.86%), Query Frame = 0
Query: 1 MESFIDGT-PAPPKFLDPAHTQLNPLFTVWQKYNRTLMSWIYSSLNEDELGEIIGCSSAY 60
+ ++DGT PP+FLD Q NP + W++YNR LM WIYSSL+E+++GE++ + +
Sbjct: 55 LRGYLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLETTH 114
Query: 61 EIWDHLRIVYESSSTARIMSLRSQLQKIKKDGLSVSQYLAQIKDIADKFSAIGEPLSYLD 120
+IW L VY+S +TARIM L+++LQ ++KDG SVSQYLA+IK+IADKF+A+GEPLSY D
Sbjct: 115 DIWSSLTRVYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYRD 174
Query: 121 HLGYILEGLESEYNAFVTSVHNRTNRPSLADLRSLLIAYDARLEKQTSVDQLNLIQANLA 180
HL ++L+GL SEYNAFVTS+HNR + PSL D+RSLL+AY+ARL+KQ +VDQLN+ QANL
Sbjct: 175 HLAHVLDGLGSEYNAFVTSIHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQANLV 234
Query: 181 NLSSNPSSQPKRFQRSSNPPKPNSNSRQPSPFPFPPNFSFSPSPGVLGRPQTSPRPPRWP 240
NLS +S+ PPK + + FP P S + S +LG+PQ+ + P P
Sbjct: 235 NLSLQHNSK-------RPPPKFSFPNHYKHSFPNSP-ISAAQSQSILGKPQSVHKWPPKP 294
Query: 241 SNNQNRPQCHICGKFGHTTLVCYNRHNPVYQAPQVSSPPQAFFNQFSASSAPVSQSVPVS 300
S+ ++ QC ICGK GH+ VCY+R N Y ++ PQA ++ S P
Sbjct: 295 SS--SKIQCQICGKLGHSAAVCYHRTNIAYH----NASPQALYHHVQPS--------PTH 354
Query: 301 ASSSTFIPLTSHPDESWFMDSGATHHMTPDFNTIQHPSPYYGSE 344
SS HPDESWFMDSGATHHMTPD + + +P+PY G E
Sbjct: 355 PSSGHEF---QHPDESWFMDSGATHHMTPDSSILCNPTPYSGGE 373
BLAST of Lag0032565 vs. NCBI nr
Match:
RVW69807.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])
HSP 1 Score: 213.4 bits (542), Expect = 3.1e-51
Identity = 131/340 (38.53%), Postives = 177/340 (52.06%), Query Frame = 0
Query: 1 MESFID-GTPAPPKFLDPAHTQLNPLFTVWQKYNRTLMSWIYSSLNEDELGEIIGCSSAY 60
+E FID +PPK+LD A Q+NP F W + N+ +MSWIYSSL +G+I+ S+A
Sbjct: 65 LEDFIDPDQSSPPKYLDAACRQVNPEFVQWDRLNQLVMSWIYSSLTPGMVGQIVEYSTAR 124
Query: 61 EIWDHLRIVYESSSTARIMSLRSQLQKIKKDGLSVSQYLAQIKDIADKFSAIGEPLSYLD 120
+IW L YES S A +MSL SQLQ+IKK + +S+YL+++K + D+F+ IGEPLSY D
Sbjct: 125 DIWASLNDEYESPSIATVMSLNSQLQRIKKIDIPLSEYLSRLKFVFDEFATIGEPLSYRD 184
Query: 121 HLGYILEGLESEYNAFVTSVHNRTNRPSLADLRSLLIAYDARLEKQTSVDQLNLIQANLA 180
L ILEGL EY+ FVTS+HNR++RPSL ++ SLL Y+ RL +++ LN QAN
Sbjct: 185 KLTRILEGLPEEYDNFVTSIHNRSDRPSLQEVHSLLHTYEYRLSQRSMDQNLNFPQAN-- 244
Query: 181 NLSSNPSSQPKRFQRSSNPPKPNSNSRQPSPFPFPPNFSFSPSPGVLGRPQTSPRPPRWP 240
PR P
Sbjct: 245 --------------------------------------------------------PRQP 304
Query: 241 SNNQNRPQCHICGKFGHTTLVCYNRHNPVYQAPQVSSPPQAFFNQFSASSAPVSQSVPVS 300
N + PQC ICGK GH L Y+R N Y P + N +S+P+S + S
Sbjct: 305 GYNNSIPQCQICGKSGHIALNGYHRTNLTYHPPVFPNAAAFNPNGPGQTSSPISAMLTTS 344
Query: 301 ASSSTFIPLTSHPDESWFMDSGATHHMTPDFNTIQHPSPY 340
A+ + +S D SW+MDSGATHH TP+F + Y
Sbjct: 365 AAPTGLSSQSS--DNSWYMDSGATHHFTPEFGHMTDAMQY 344
BLAST of Lag0032565 vs. NCBI nr
Match:
GFY82848.1 (hypothetical protein Acr_02g0010880 [Actinidia rufa])
HSP 1 Score: 213.4 bits (542), Expect = 3.1e-51
Identity = 132/307 (43.00%), Postives = 185/307 (60.26%), Query Frame = 0
Query: 37 MSWIYSSLNEDELGEIIGCSSAYEIWDHLRIVYESSSTARIMSLRSQLQKIKKDGLSVSQ 96
MSWIY+S+NE LG+I+G +SA +IW+ L +Y ++S A + LR+ LQ IKKDGL+
Sbjct: 1 MSWIYASINEFMLGQIVGYTSASQIWEALERLYAAASFAHLTELRTALQTIKKDGLTALA 60
Query: 97 YLAQIKDIADKFSAIGEPLSYLDHLGYILEGLESEYNAFVTSVHNRTNRPSLADLRSLLI 156
Y+ + + + + ++IGEP++Y DHL Y L GL +YN FVTS+ ++ RPS+ ++ SLL+
Sbjct: 61 YIQKFRHLCNSLASIGEPVTYTDHLIYFLGGLGRDYNPFVTSIQSQAIRPSIEEVHSLLL 120
Query: 157 AYDARLEKQTSVDQLNLIQANLANLSSNPSSQPKRFQRSSNPPKPNSNSRQPSPFPFPPN 216
+YDARLE+Q++ D L+ +QANLANL + Q +F+ S PNSNS P N
Sbjct: 121 SYDARLERQSATDTLSSLQANLANL----TYQKPKFKNPSTNSFPNSNS-YSHPRGQNRN 180
Query: 217 FSFSPSPGVLGRPQTSPRPPRWPSNNQNRPQCHICGKFGHTTLVCYNRHNPVYQAPQVSS 276
S+SP+P +SP+P RP+C IC K GHT CY+R N YQ P
Sbjct: 181 PSYSPNP-------SSPKP---------RPRCQICLKPGHTANKCYHRTNLNYQPP---P 240
Query: 277 PPQAFFNQFSASSAPVSQSVPVSASSSTFIPLTSHPDESWFMDSGATHHMTPDFNTIQHP 336
PP FN + + +S S AS+S S PD SW+MDSGA+HH TP N +
Sbjct: 241 PPPRNFNAYITPNPSISTSSNQPASAS------SLPDSSWYMDSGASHHFTPYLNMLDSA 277
Query: 337 SPYYGSE 344
SPY G +
Sbjct: 301 SPYTGMD 277
BLAST of Lag0032565 vs. NCBI nr
Match:
XP_022148871.1 (uncharacterized protein LOC111017438 [Momordica charantia])
HSP 1 Score: 209.9 bits (533), Expect = 3.4e-50
Identity = 127/273 (46.52%), Postives = 171/273 (62.64%), Query Frame = 0
Query: 83 QLQKIKKDGLSVSQYLAQIKDIADKFSAIGEPLSYLDHLGYILEGLESEYNAFVTSVHNR 142
++Q++KKDGLSVSQYLA+IK+I K S+IGEP+S DH+ YI+EGL EYNAFVTS+ NR
Sbjct: 7 EIQQVKKDGLSVSQYLAKIKEITGKLSSIGEPISLKDHISYIIEGLGIEYNAFVTSIQNR 66
Query: 143 TNRPSLADLRSLLIAYDARLEKQTSVDQLNLIQANLANLSSNPSSQPKRFQRSSNPPKPN 202
++ +L D+R+LL+AYD RLEKQ SVDQLN++QAN+ANL N S R
Sbjct: 67 SDMXTLEDVRTLLLAYDYRLEKQNSVDQLNVVQANVANLQLNRQSGHTR----------- 126
Query: 203 SNSRQPSPFPFPPNFSFSPSPGVLGRPQTSPRPPRWPSNNQN----RPQCHICGKFGHTT 262
N R PS P F+F PG+LG+P + +PP WP + Q+ + QC IC K GHTT
Sbjct: 127 -NHRVPSQHS-PRPFNFKTQPGLLGKPNQNSQPP-WPPSQQSPRNPKVQCQICFKLGHTT 186
Query: 263 LVCYNRHNPVYQA---PQVSSPPQAFFNQFSASSAPVSQS-----VPVSASSSTFIPLTS 322
CY+R N Y+ P P A F+ ++SS+ QS VP + + +F L
Sbjct: 187 SKCYHRANLQYKLNFFPTNQPNPHALFHHVNSSSSQFQQSNPTANVPPTPNPFSFPNLIV 246
Query: 323 HPDESWFMDSGATHHMTPDFNTIQHPSPYYGSE 344
PD+ W+MDSGATHH++ D N++ + Y G E
Sbjct: 247 IPDDLWYMDSGATHHISHDINSLFNLMXYTGGE 265
BLAST of Lag0032565 vs. NCBI nr
Match:
GFZ12741.1 (UBX domain-containing protein [Actinidia rufa])
HSP 1 Score: 207.6 bits (527), Expect = 1.7e-49
Identity = 133/344 (38.66%), Postives = 187/344 (54.36%), Query Frame = 0
Query: 1 MESFIDGT-PAPPKFLDPAHTQLNPLFTVWQKYNRTLMSWIYSSLNEDELGEIIGCSSAY 60
+E F+DG+ PP+FLDP Q NP F WQ+YNR +MSWIY+S+NE LG+I+G +SA
Sbjct: 76 LEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVGYTSAS 135
Query: 61 EIWDHLRIVYESSSTARIMSLRSQLQKIKKDGLSVSQYLAQIKDIADKFSAIGEPLSYLD 120
+IW+ L +Y ++S A + LR+ LQ IKK+GL+ Y+ + + + + ++IGEP++Y D
Sbjct: 136 QIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLASIGEPVTYTD 195
Query: 121 HLGYILEGLESEYNAFVTSVHNRTNRPSLADLRSLLIAYDARLEKQTSVDQLNLIQANLA 180
HL Y L GL +YN FVTS+ ++ RPS +E+ TS L
Sbjct: 196 HLIYFLGGLGRDYNPFVTSIQSQAIRPS--------------VEEPTSPTSL-------- 255
Query: 181 NLSSNPSSQPKRFQRSSNPPKPNSNSRQPSPFPFPPNFSFSPSPGVLGRPQTSPRPPRWP 240
++ +F+ S PNSNS P N S+SP+P +SP+P
Sbjct: 256 -------TRKPKFKNPSTNSFPNSNS-YSHPRGQNRNPSYSPNP-------SSPKP---- 315
Query: 241 SNNQNRPQCHICGKFGHTTLVCYNRHNPVYQAPQVSSPPQAFFNQFSASSAPVSQSVPVS 300
RP+C IC K GHT CY+ N YQ P PP FN + + +S S
Sbjct: 316 -----RPRCQICLKPGHTANKCYHHTNLNYQPP---PPPPRNFNAYITPNPSLSTS---- 365
Query: 301 ASSSTFIPLTSHPDESWFMDSGATHHMTPDFNTIQHPSPYYGSE 344
S+ + L S PD SW+MDSGA+HH TPD N + SPY G +
Sbjct: 376 -SNQPAMLLLSLPDSSWYMDSGASHHFTPDLNMLDSASPYTGMD 365
BLAST of Lag0032565 vs. ExPASy Swiss-Prot
Match:
Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)
HSP 1 Score: 96.3 bits (238), Expect = 7.2e-19
Identity = 76/348 (21.84%), Postives = 158/348 (45.40%), Query Frame = 0
Query: 1 MESFIDG-TPAPPKFL-DPAHTQLNPLFTVWQKYNRTLMSWIYSSLNEDELGEIIGCSSA 60
+ F+DG T PP + A ++NP +T W++ ++ + S + +++ + ++A
Sbjct: 47 LAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTA 106
Query: 61 YEIWDHLRIVYESSSTARIMSLRSQLQKIKKDGLSVSQYLAQIKDIADKFSAIGEPLSYL 120
+IW+ LR +Y + S + LR+QL++ K ++ Y+ + D+ + +G+P+ +
Sbjct: 107 AQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHD 166
Query: 121 DHLGYILEGLESEYNAFVTSVHNRTNRPSLADLRSLLIAYDARLEKQTSVDQLNLIQANL 180
+ + +LE L EY + + + P+L ++ L+ +++++ +S + + +
Sbjct: 167 EQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHERLLNHESKILAVSSATVIPITANAV 226
Query: 181 ANLSSNPSSQPKRFQRSSNPPKPNSNSRQPSPFPFPPNFSFSPSPGVLGRPQTSPRPPRW 240
++ ++ ++ R++ N+N+ NF
Sbjct: 227 SHRNTTTTNNNNNGNRNNRYDNRNNNNNSKPWQQSSTNFH-------------------- 286
Query: 241 PSNNQNRP---QCHICGKFGHTTLVCYNRHNPVYQAPQVSSPPQAFFNQFSASSAPVSQS 300
P+NNQ++P +C ICG GH+ C S Q F + + S P S
Sbjct: 287 PNNNQSKPYLGKCQICGVQGHSAKRC--------------SQLQHFLSSVN-SQQPPSPF 346
Query: 301 VPVSASSSTFIPLTSHPDESWFMDSGATHHMTPDFNTIQHPSPYYGSE 344
P ++ + + + +W +DSGATHH+T DFN + PY G +
Sbjct: 347 TPWQPRANLALG-SPYSSNNWLLDSGATHHITSDFNNLSLHQPYTGGD 358
BLAST of Lag0032565 vs. ExPASy Swiss-Prot
Match:
Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)
HSP 1 Score: 79.0 bits (193), Expect = 1.2e-13
Identity = 84/348 (24.14%), Postives = 153/348 (43.97%), Query Frame = 0
Query: 1 MESFIDG-TPAPPKFL-DPAHTQLNPLFTVWQKYNRTLMSWIYSSLNEDELGEIIGCSSA 60
+ F+DG TP PP + A ++NP +T W++ ++ + S I +++ + ++A
Sbjct: 47 LAGFLDGSTPMPPATIGTDAVPRVNPDYTRWRRQDKLIYSAILGAISMSVQPAVSRATTA 106
Query: 61 YEIWDHLRIVYESSSTARIMSLRSQLQKIKKDGLSVSQYLAQIKDIADKFSAIGEPLSYL 120
+IW+ LR +Y + S + LR ++ + D+ + +G+P+ +
Sbjct: 107 AQIWETLRKIYANPSYGHVTQLR---------------FITRF----DQLALLGKPMDHD 166
Query: 121 DHLGYILEGLESEYNAFVTSVHNRTNRPSLADLRSLLIAYDARLEKQTSVDQLNLIQANL 180
+ + +LE L +Y + + + PSL ++ LI +++L S + + I AN+
Sbjct: 167 EQVERVLENLPDDYKPVIDQIAAKDTPPSLTEIHERLINRESKLLALNSAEVVP-ITANV 226
Query: 181 ANLSSNPSSQPKRFQRSSNPPKPNSNSRQPSPFPFPPNFSFSPSPGVLGRPQTSPRPPRW 240
N ++ + R N N+N+R S + P+ S S S
Sbjct: 227 VT-HRNTNTNRNQNNRGDNRNYNNNNNRSNS---WQPSSSGSRS---------------- 286
Query: 241 PSNNQNRP---QCHICGKFGHTTLVCYNRHNPVYQAPQVSSPPQAFFNQFSASSAPVSQS 300
N Q +P +C IC GH+ C H Q+ NQ S++P +
Sbjct: 287 -DNRQPKPYLGRCQICSVQGHSAKRCPQLHQ-----------FQSTTNQ-QQSTSPFTPW 337
Query: 301 VPVSASSSTFIPLTSHPDESWFMDSGATHHMTPDFNTIQHPSPYYGSE 344
P A+ + P ++ +W +DSGATHH+T DFN + PY G +
Sbjct: 347 QP-RANLAVNSPYNAN---NWLLDSGATHHITSDFNNLSFHQPYTGGD 337
BLAST of Lag0032565 vs. ExPASy TrEMBL
Match:
A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)
HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 170/344 (49.42%), Postives = 230/344 (66.86%), Query Frame = 0
Query: 1 MESFIDGT-PAPPKFLDPAHTQLNPLFTVWQKYNRTLMSWIYSSLNEDELGEIIGCSSAY 60
+ ++DGT PP+FLD Q NP + W++YNR LM WIYSSL+E+++GE++ + +
Sbjct: 55 LRGYLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLETTH 114
Query: 61 EIWDHLRIVYESSSTARIMSLRSQLQKIKKDGLSVSQYLAQIKDIADKFSAIGEPLSYLD 120
+IW L VY+S +TARIM L+++LQ ++KDG SVSQYLA+IK+IADKF+A+GEPLSY D
Sbjct: 115 DIWSSLTRVYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYRD 174
Query: 121 HLGYILEGLESEYNAFVTSVHNRTNRPSLADLRSLLIAYDARLEKQTSVDQLNLIQANLA 180
HL ++L+GL SEYNAFVTS+HNR + PSL D+RSLL+AY+ARL+KQ +VDQLN+ QANL
Sbjct: 175 HLAHVLDGLGSEYNAFVTSIHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQANLV 234
Query: 181 NLSSNPSSQPKRFQRSSNPPKPNSNSRQPSPFPFPPNFSFSPSPGVLGRPQTSPRPPRWP 240
NLS +S+ PPK + + FP P S + S +LG+PQ+ + P P
Sbjct: 235 NLSLQHNSK-------RPPPKFSFPNHYKHSFPNSP-ISAAQSQSILGKPQSVHKWPPKP 294
Query: 241 SNNQNRPQCHICGKFGHTTLVCYNRHNPVYQAPQVSSPPQAFFNQFSASSAPVSQSVPVS 300
S+ ++ QC ICGK GH+ VCY+R N Y ++ PQA ++ S P
Sbjct: 295 SS--SKIQCQICGKLGHSAAVCYHRTNIAYH----NASPQALYHHVQPS--------PTH 354
Query: 301 ASSSTFIPLTSHPDESWFMDSGATHHMTPDFNTIQHPSPYYGSE 344
SS HPDESWFMDSGATHHMTPD + + +P+PY G E
Sbjct: 355 PSSGHEF---QHPDESWFMDSGATHHMTPDSSILCNPTPYSGGE 373
BLAST of Lag0032565 vs. ExPASy TrEMBL
Match:
A0A438GC62 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_210 PE=4 SV=1)
HSP 1 Score: 213.4 bits (542), Expect = 1.5e-51
Identity = 131/340 (38.53%), Postives = 177/340 (52.06%), Query Frame = 0
Query: 1 MESFID-GTPAPPKFLDPAHTQLNPLFTVWQKYNRTLMSWIYSSLNEDELGEIIGCSSAY 60
+E FID +PPK+LD A Q+NP F W + N+ +MSWIYSSL +G+I+ S+A
Sbjct: 65 LEDFIDPDQSSPPKYLDAACRQVNPEFVQWDRLNQLVMSWIYSSLTPGMVGQIVEYSTAR 124
Query: 61 EIWDHLRIVYESSSTARIMSLRSQLQKIKKDGLSVSQYLAQIKDIADKFSAIGEPLSYLD 120
+IW L YES S A +MSL SQLQ+IKK + +S+YL+++K + D+F+ IGEPLSY D
Sbjct: 125 DIWASLNDEYESPSIATVMSLNSQLQRIKKIDIPLSEYLSRLKFVFDEFATIGEPLSYRD 184
Query: 121 HLGYILEGLESEYNAFVTSVHNRTNRPSLADLRSLLIAYDARLEKQTSVDQLNLIQANLA 180
L ILEGL EY+ FVTS+HNR++RPSL ++ SLL Y+ RL +++ LN QAN
Sbjct: 185 KLTRILEGLPEEYDNFVTSIHNRSDRPSLQEVHSLLHTYEYRLSQRSMDQNLNFPQAN-- 244
Query: 181 NLSSNPSSQPKRFQRSSNPPKPNSNSRQPSPFPFPPNFSFSPSPGVLGRPQTSPRPPRWP 240
PR P
Sbjct: 245 --------------------------------------------------------PRQP 304
Query: 241 SNNQNRPQCHICGKFGHTTLVCYNRHNPVYQAPQVSSPPQAFFNQFSASSAPVSQSVPVS 300
N + PQC ICGK GH L Y+R N Y P + N +S+P+S + S
Sbjct: 305 GYNNSIPQCQICGKSGHIALNGYHRTNLTYHPPVFPNAAAFNPNGPGQTSSPISAMLTTS 344
Query: 301 ASSSTFIPLTSHPDESWFMDSGATHHMTPDFNTIQHPSPY 340
A+ + +S D SW+MDSGATHH TP+F + Y
Sbjct: 365 AAPTGLSSQSS--DNSWYMDSGATHHFTPEFGHMTDAMQY 344
BLAST of Lag0032565 vs. ExPASy TrEMBL
Match:
A0A7J0E8R3 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_02g0010880 PE=4 SV=1)
HSP 1 Score: 213.4 bits (542), Expect = 1.5e-51
Identity = 132/307 (43.00%), Postives = 185/307 (60.26%), Query Frame = 0
Query: 37 MSWIYSSLNEDELGEIIGCSSAYEIWDHLRIVYESSSTARIMSLRSQLQKIKKDGLSVSQ 96
MSWIY+S+NE LG+I+G +SA +IW+ L +Y ++S A + LR+ LQ IKKDGL+
Sbjct: 1 MSWIYASINEFMLGQIVGYTSASQIWEALERLYAAASFAHLTELRTALQTIKKDGLTALA 60
Query: 97 YLAQIKDIADKFSAIGEPLSYLDHLGYILEGLESEYNAFVTSVHNRTNRPSLADLRSLLI 156
Y+ + + + + ++IGEP++Y DHL Y L GL +YN FVTS+ ++ RPS+ ++ SLL+
Sbjct: 61 YIQKFRHLCNSLASIGEPVTYTDHLIYFLGGLGRDYNPFVTSIQSQAIRPSIEEVHSLLL 120
Query: 157 AYDARLEKQTSVDQLNLIQANLANLSSNPSSQPKRFQRSSNPPKPNSNSRQPSPFPFPPN 216
+YDARLE+Q++ D L+ +QANLANL + Q +F+ S PNSNS P N
Sbjct: 121 SYDARLERQSATDTLSSLQANLANL----TYQKPKFKNPSTNSFPNSNS-YSHPRGQNRN 180
Query: 217 FSFSPSPGVLGRPQTSPRPPRWPSNNQNRPQCHICGKFGHTTLVCYNRHNPVYQAPQVSS 276
S+SP+P +SP+P RP+C IC K GHT CY+R N YQ P
Sbjct: 181 PSYSPNP-------SSPKP---------RPRCQICLKPGHTANKCYHRTNLNYQPP---P 240
Query: 277 PPQAFFNQFSASSAPVSQSVPVSASSSTFIPLTSHPDESWFMDSGATHHMTPDFNTIQHP 336
PP FN + + +S S AS+S S PD SW+MDSGA+HH TP N +
Sbjct: 241 PPPRNFNAYITPNPSISTSSNQPASAS------SLPDSSWYMDSGASHHFTPYLNMLDSA 277
Query: 337 SPYYGSE 344
SPY G +
Sbjct: 301 SPYTGMD 277
BLAST of Lag0032565 vs. ExPASy TrEMBL
Match:
A0A6J1D6N7 (uncharacterized protein LOC111017438 OS=Momordica charantia OX=3673 GN=LOC111017438 PE=4 SV=1)
HSP 1 Score: 209.9 bits (533), Expect = 1.7e-50
Identity = 127/273 (46.52%), Postives = 171/273 (62.64%), Query Frame = 0
Query: 83 QLQKIKKDGLSVSQYLAQIKDIADKFSAIGEPLSYLDHLGYILEGLESEYNAFVTSVHNR 142
++Q++KKDGLSVSQYLA+IK+I K S+IGEP+S DH+ YI+EGL EYNAFVTS+ NR
Sbjct: 7 EIQQVKKDGLSVSQYLAKIKEITGKLSSIGEPISLKDHISYIIEGLGIEYNAFVTSIQNR 66
Query: 143 TNRPSLADLRSLLIAYDARLEKQTSVDQLNLIQANLANLSSNPSSQPKRFQRSSNPPKPN 202
++ +L D+R+LL+AYD RLEKQ SVDQLN++QAN+ANL N S R
Sbjct: 67 SDMXTLEDVRTLLLAYDYRLEKQNSVDQLNVVQANVANLQLNRQSGHTR----------- 126
Query: 203 SNSRQPSPFPFPPNFSFSPSPGVLGRPQTSPRPPRWPSNNQN----RPQCHICGKFGHTT 262
N R PS P F+F PG+LG+P + +PP WP + Q+ + QC IC K GHTT
Sbjct: 127 -NHRVPSQHS-PRPFNFKTQPGLLGKPNQNSQPP-WPPSQQSPRNPKVQCQICFKLGHTT 186
Query: 263 LVCYNRHNPVYQA---PQVSSPPQAFFNQFSASSAPVSQS-----VPVSASSSTFIPLTS 322
CY+R N Y+ P P A F+ ++SS+ QS VP + + +F L
Sbjct: 187 SKCYHRANLQYKLNFFPTNQPNPHALFHHVNSSSSQFQQSNPTANVPPTPNPFSFPNLIV 246
Query: 323 HPDESWFMDSGATHHMTPDFNTIQHPSPYYGSE 344
PD+ W+MDSGATHH++ D N++ + Y G E
Sbjct: 247 IPDDLWYMDSGATHHISHDINSLFNLMXYTGGE 265
BLAST of Lag0032565 vs. ExPASy TrEMBL
Match:
A0A7J0GPN0 (UBX domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_23g0011260 PE=4 SV=1)
HSP 1 Score: 207.6 bits (527), Expect = 8.2e-50
Identity = 133/344 (38.66%), Postives = 187/344 (54.36%), Query Frame = 0
Query: 1 MESFIDGT-PAPPKFLDPAHTQLNPLFTVWQKYNRTLMSWIYSSLNEDELGEIIGCSSAY 60
+E F+DG+ PP+FLDP Q NP F WQ+YNR +MSWIY+S+NE LG+I+G +SA
Sbjct: 76 LEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVGYTSAS 135
Query: 61 EIWDHLRIVYESSSTARIMSLRSQLQKIKKDGLSVSQYLAQIKDIADKFSAIGEPLSYLD 120
+IW+ L +Y ++S A + LR+ LQ IKK+GL+ Y+ + + + + ++IGEP++Y D
Sbjct: 136 QIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLASIGEPVTYTD 195
Query: 121 HLGYILEGLESEYNAFVTSVHNRTNRPSLADLRSLLIAYDARLEKQTSVDQLNLIQANLA 180
HL Y L GL +YN FVTS+ ++ RPS +E+ TS L
Sbjct: 196 HLIYFLGGLGRDYNPFVTSIQSQAIRPS--------------VEEPTSPTSL-------- 255
Query: 181 NLSSNPSSQPKRFQRSSNPPKPNSNSRQPSPFPFPPNFSFSPSPGVLGRPQTSPRPPRWP 240
++ +F+ S PNSNS P N S+SP+P +SP+P
Sbjct: 256 -------TRKPKFKNPSTNSFPNSNS-YSHPRGQNRNPSYSPNP-------SSPKP---- 315
Query: 241 SNNQNRPQCHICGKFGHTTLVCYNRHNPVYQAPQVSSPPQAFFNQFSASSAPVSQSVPVS 300
RP+C IC K GHT CY+ N YQ P PP FN + + +S S
Sbjct: 316 -----RPRCQICLKPGHTANKCYHHTNLNYQPP---PPPPRNFNAYITPNPSLSTS---- 365
Query: 301 ASSSTFIPLTSHPDESWFMDSGATHHMTPDFNTIQHPSPYYGSE 344
S+ + L S PD SW+MDSGA+HH TPD N + SPY G +
Sbjct: 376 -SNQPAMLLLSLPDSSWYMDSGASHHFTPDLNMLDSASPYTGMD 365
BLAST of Lag0032565 vs. TAIR 10
Match:
AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 56.2 bits (134), Expect = 5.9e-08
Identity = 29/101 (28.71%), Postives = 55/101 (54.46%), Query Frame = 0
Query: 4 FIDGTPAPPKFLDPAHTQLNPLFTVWQKYNRTLMSWIYSSLNEDELGEIIGCSSAYEIWD 63
FIDGT P DP +PL+ W++ N +M W+ +S+ + L ++ +A+++W+
Sbjct: 61 FIDGTLPKP---DP----FSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWE 120
Query: 64 HLRIVYESSSTARIMSLRSQLQKIKKDGLSVSQYLAQIKDI 105
LR V+ +I LR +L +++ G SV +Y ++ +
Sbjct: 121 DLRRVFVPCVDLKIYQLRRRLATLRQGGDSVEEYFGKLSKV 154
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022155181.1 | 3.2e-80 | 49.42 | uncharacterized protein LOC111022315 [Momordica charantia] | [more] |
RVW69807.1 | 3.1e-51 | 38.53 | Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | [more] |
GFY82848.1 | 3.1e-51 | 43.00 | hypothetical protein Acr_02g0010880 [Actinidia rufa] | [more] |
XP_022148871.1 | 3.4e-50 | 46.52 | uncharacterized protein LOC111017438 [Momordica charantia] | [more] |
GFZ12741.1 | 1.7e-49 | 38.66 | UBX domain-containing protein [Actinidia rufa] | [more] |
Match Name | E-value | Identity | Description | |
Q94HW2 | 7.2e-19 | 21.84 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... | [more] |
Q9ZT94 | 1.2e-13 | 24.14 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1DQX7 | 1.5e-80 | 49.42 | uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022... | [more] |
A0A438GC62 | 1.5e-51 | 38.53 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... | [more] |
A0A7J0E8R3 | 1.5e-51 | 43.00 | Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_02g0010880 PE=4 SV=1 | [more] |
A0A6J1D6N7 | 1.7e-50 | 46.52 | uncharacterized protein LOC111017438 OS=Momordica charantia OX=3673 GN=LOC111017... | [more] |
A0A7J0GPN0 | 8.2e-50 | 38.66 | UBX domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_23g0011260 PE=4... | [more] |
Match Name | E-value | Identity | Description | |
AT1G21280.1 | 5.9e-08 | 28.71 | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha... | [more] |