Lag0032553 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032553
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotransposon gag protein
Locationchr11: 34523575 .. 34525381 (+)
RNA-Seq ExpressionLag0032553
SyntenyLag0032553
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAGCTACTCGTCCTTCGGCATTCCAAAGAATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTTGATGTCCACCTCTACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAACTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGGTCAATCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTGATGAAGTAAACAGCGATAAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAACCAAATCTCATTATCTTGACCAGTCCTATAAGTCAAGGACCTGATCAAGACCATGATGAAGATAAGAGCTTTTAAAATGTAAAACTCCTTATCGTAAGAGTCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGTGCAAAAACAATTTTGAACTACGTTATGACTTGGTCCCTTTTCTTCAAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTGCAAAAAAAAAAAAAAAGTGCAACAAATATTGAAGCACGACGATATAAATTGAGGAAATTCATCACTAGTGGGGGCAACACAGCGAATGGAAGTTGTTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTGAAGGTTCGCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACACGCTTCGCTGCAGTTTCTTCTCCCTAACTTCGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCCTAAGTTTGAAGGTTCTCACGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTTCATGCGTTTGGTGCAGTTCCTTCTCTCCACGTTCAAAGGTTCTCACGCATTCGCTACAGTTCATTTCCTCCAAGTTCAAGGTTCTCATGCGCTTCGCTGCAGTTTCTTCTCCCTAAGTTCGAAGGTTCTCACGCGCTTCGATGCAGTTCCTTCCTCCCTAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCCTTCCTCCAAATTTGAAGGTTTCGAAGGTTCTCACGCGCTGTGATTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTTATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTACGAAGGTTCCTCACGCGCTTCGATCGCTCCTTCTCCAAGTTCGAAGGCTCTTCGCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCTCTTCTCTCTACTGCTCATTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGTAGTTGACGGCGTCCGCTGCGCTTCATCTTCAAATGTTGGCAGTTGA

mRNA sequence

ATGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAGCTACTCGTCCTTCGGCATTCCAAAGAATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTTGATGTCCACCTCTACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAACTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGGTCAATCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTGATGAACGAATGGAAGTTGTTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTGAAGGTTCGCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACACGCTTCGCTGCAGTTTCTTCTCCCTAACTTCGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCCTAAGTTTGAAGGTTCTCACGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTTCATGCGTTTGGTGCAGTTCCTTCTCTCCACGTTCAAAGGTTCTCACGCATTCGCTACAGTTCATTTCCTCCAAGTTCAAGGTTCTCATGCGCTTCGCTGCAGTTTCTTCTCCCTAAGTTCGAAGGTTCTCACGCGCTTCGATGCAGTTCCTTCCTCCCTAAGTTCGAAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTTATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTACGAAGGTTCCTCACGCGCTTCGATCGCTCCTTCTCCAAGTTCGAAGGCTCTTCGCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCTCTTCTCTCTACTGCTCATTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGTAGTTGACGGCGTCCGCTGCGCTTCATCTTCAAATGTTGGCAGTTGA

Coding sequence (CDS)

ATGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAGCTACTCGTCCTTCGGCATTCCAAAGAATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTTGATGTCCACCTCTACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAACTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGGTCAATCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTGATGAACGAATGGAAGTTGTTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTGAAGGTTCGCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACACGCTTCGCTGCAGTTTCTTCTCCCTAACTTCGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCCTAAGTTTGAAGGTTCTCACGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTTCATGCGTTTGGTGCAGTTCCTTCTCTCCACGTTCAAAGGTTCTCACGCATTCGCTACAGTTCATTTCCTCCAAGTTCAAGGTTCTCATGCGCTTCGCTGCAGTTTCTTCTCCCTAAGTTCGAAGGTTCTCACGCGCTTCGATGCAGTTCCTTCCTCCCTAAGTTCGAAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTTATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTACGAAGGTTCCTCACGCGCTTCGATCGCTCCTTCTCCAAGTTCGAAGGCTCTTCGCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCTCTTCTCTCTACTGCTCATTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGTAGTTGACGGCGTCCGCTGCGCTTCATCTTCAAATGTTGGCAGTTGA

Protein sequence

MGEQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLLMNEWKLFPPSSKVLTRFAAVPSSQFEGSHALRCSSFPQVRRFSRRFAAVPSSKLKVRTSLRFALRFVAVPSSKFEGSHTLRCSFFSLTSKVLTRFAAIPSSLSLKVLTLLRCSSFLQVRRFHAFGAVPSLHVQRFSRIRYSSFPPSSRFSCASLQFLLPKFEGSHALRCSSFLPKFEVPSSKFEGSHALRCAVPSSKFEGSYALRCYLPPSSKVLSRAAAVPSSKYEGSSRASIAPSPSSKALRSTAPSPSSKALLSVATSPSSKALLSTAPSPSSKALLSTAHSPSSKVLLSTPLFEGSPLRFSFSKFEGSPLLLFKCLAAVDVLVPLHLQMLVVDGVRCASSSNVGS
Homology
BLAST of Lag0032553 vs. NCBI nr
Match: KAA0050736.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ95700.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-18
Identity = 57/83 (68.67%), Postives = 67/83 (80.72%), Query Frame = 0

Query: 3   EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPST 62
           +QRTSVFDRIKP  TR S FQR+SMA  EEENQC MST TR SAF+RLS+S SKK RPST
Sbjct: 380 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPMSTYTRTSAFKRLSISRSKKHRPST 439

Query: 63  SVFDRLKVTSGQSKRKMDNLEVK 86
           S FDRLK+T+ Q +R+M +L+ K
Sbjct: 440 SAFDRLKMTNDQQQREMKSLKAK 462

BLAST of Lag0032553 vs. NCBI nr
Match: KAA0025725.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 1.5e-18
Identity = 57/83 (68.67%), Postives = 67/83 (80.72%), Query Frame = 0

Query: 3   EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPST 62
           +QRTSVFDRIKP  TR SAFQR+SMA  EEENQC  ST  R SAF+RLS+STSKK RPST
Sbjct: 129 KQRTSVFDRIKPLTTRSSAFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPST 188

Query: 63  SVFDRLKVTSGQSKRKMDNLEVK 86
           S FDRLK+T+ Q +R+M +L+ K
Sbjct: 189 SAFDRLKMTNDQQQREMKSLKAK 211

BLAST of Lag0032553 vs. NCBI nr
Match: KAA0062746.1 (Retrotransposon gag protein [Cucumis melo var. makuwa] >TYK22545.1 Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 2.0e-18
Identity = 54/88 (61.36%), Postives = 69/88 (78.41%), Query Frame = 0

Query: 3   EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPST 62
           ++RTS+FDRIKP  TR S F+R+SMA  EEENQCL STST+ SAF+RLS+STSKK RPS 
Sbjct: 70  KKRTSIFDRIKPSTTRSSVFERLSMATKEEENQCLTSTSTQTSAFKRLSISTSKKDRPSI 129

Query: 63  SVFDRLKVTSGQSKRKMDNLEVKLLMNE 91
           S FDRLK+T+ Q +R++  L+ K  + E
Sbjct: 130 SAFDRLKMTNNQQQREIKTLKTKPFLEE 157

BLAST of Lag0032553 vs. NCBI nr
Match: KAA0062063.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 2.0e-18
Identity = 56/88 (63.64%), Postives = 66/88 (75.00%), Query Frame = 0

Query: 3   EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPST 62
           +QRT VFDRIKP  TR S FQR+SM   EEENQC MSTST+ S F+RLS+STSKK RPST
Sbjct: 481 KQRTFVFDRIKPSTTRSSVFQRLSMVMKEEENQCPMSTSTQTSTFKRLSISTSKKDRPST 540

Query: 63  SVFDRLKVTSGQSKRKMDNLEVKLLMNE 91
           S FDRLK  + Q +R+M  L+ KL + E
Sbjct: 541 SAFDRLKKANDQQQREMKTLKAKLFLEE 568

BLAST of Lag0032553 vs. NCBI nr
Match: KAA0047862.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 3.4e-18
Identity = 55/88 (62.50%), Postives = 68/88 (77.27%), Query Frame = 0

Query: 3   EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPST 62
           ++RTSVFDRIKP  TR S F+R+SMA  EEENQC  S STR  +F+RLS+STSKK RPST
Sbjct: 70  KERTSVFDRIKPSTTRSSVFKRLSMATKEEENQCPTSISTRNFSFKRLSISTSKKDRPST 129

Query: 63  SVFDRLKVTSGQSKRKMDNLEVKLLMNE 91
           S FDRLK+T+ Q +R+M  L+ KL + E
Sbjct: 130 SAFDRLKMTNDQQQREMKTLKAKLFLKE 157

BLAST of Lag0032553 vs. ExPASy TrEMBL
Match: A0A5A7U974 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00280 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.6e-19
Identity = 57/83 (68.67%), Postives = 67/83 (80.72%), Query Frame = 0

Query: 3   EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPST 62
           +QRTSVFDRIKP  TR S FQR+SMA  EEENQC MST TR SAF+RLS+S SKK RPST
Sbjct: 380 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPMSTYTRTSAFKRLSISRSKKHRPST 439

Query: 63  SVFDRLKVTSGQSKRKMDNLEVK 86
           S FDRLK+T+ Q +R+M +L+ K
Sbjct: 440 SAFDRLKMTNDQQQREMKSLKAK 462

BLAST of Lag0032553 vs. ExPASy TrEMBL
Match: A0A5A7SMQ5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold653G00040 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 7.3e-19
Identity = 57/83 (68.67%), Postives = 67/83 (80.72%), Query Frame = 0

Query: 3   EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPST 62
           +QRTSVFDRIKP  TR SAFQR+SMA  EEENQC  ST  R SAF+RLS+STSKK RPST
Sbjct: 129 KQRTSVFDRIKPLTTRSSAFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPST 188

Query: 63  SVFDRLKVTSGQSKRKMDNLEVK 86
           S FDRLK+T+ Q +R+M +L+ K
Sbjct: 189 SAFDRLKMTNDQQQREMKSLKAK 211

BLAST of Lag0032553 vs. ExPASy TrEMBL
Match: A0A5A7V8H3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00270 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 9.6e-19
Identity = 54/88 (61.36%), Postives = 69/88 (78.41%), Query Frame = 0

Query: 3   EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPST 62
           ++RTS+FDRIKP  TR S F+R+SMA  EEENQCL STST+ SAF+RLS+STSKK RPS 
Sbjct: 70  KKRTSIFDRIKPSTTRSSVFERLSMATKEEENQCLTSTSTQTSAFKRLSISTSKKDRPSI 129

Query: 63  SVFDRLKVTSGQSKRKMDNLEVKLLMNE 91
           S FDRLK+T+ Q +R++  L+ K  + E
Sbjct: 130 SAFDRLKMTNNQQQREIKTLKTKPFLEE 157

BLAST of Lag0032553 vs. ExPASy TrEMBL
Match: A0A5A7V1P3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G004060 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 9.6e-19
Identity = 56/88 (63.64%), Postives = 66/88 (75.00%), Query Frame = 0

Query: 3   EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPST 62
           +QRT VFDRIKP  TR S FQR+SM   EEENQC MSTST+ S F+RLS+STSKK RPST
Sbjct: 481 KQRTFVFDRIKPSTTRSSVFQRLSMVMKEEENQCPMSTSTQTSTFKRLSISTSKKDRPST 540

Query: 63  SVFDRLKVTSGQSKRKMDNLEVKLLMNE 91
           S FDRLK  + Q +R+M  L+ KL + E
Sbjct: 541 SAFDRLKKANDQQQREMKTLKAKLFLEE 568

BLAST of Lag0032553 vs. ExPASy TrEMBL
Match: A0A5A7TWI6 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001280 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.6e-18
Identity = 55/88 (62.50%), Postives = 68/88 (77.27%), Query Frame = 0

Query: 3   EQRTSVFDRIKPPATRPSAFQRMSMAATEEENQCLMSTSTRPSAFQRLSVSTSKKTRPST 62
           ++RTSVFDRIKP  TR S F+R+SMA  EEENQC  S STR  +F+RLS+STSKK RPST
Sbjct: 70  KERTSVFDRIKPSTTRSSVFKRLSMATKEEENQCPTSISTRNFSFKRLSISTSKKDRPST 129

Query: 63  SVFDRLKVTSGQSKRKMDNLEVKLLMNE 91
           S FDRLK+T+ Q +R+M  L+ KL + E
Sbjct: 130 SAFDRLKMTNDQQQREMKTLKAKLFLKE 157

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0050736.11.2e-1868.67retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ95700.1 retrotranspos... [more]
KAA0025725.11.5e-1868.67retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0062746.12.0e-1861.36Retrotransposon gag protein [Cucumis melo var. makuwa] >TYK22545.1 Retrotranspos... [more]
KAA0062063.12.0e-1863.64ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0047862.13.4e-1862.50Retrotransposon gag protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U9745.6e-1968.67Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7SMQ57.3e-1968.67Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5A7V8H39.6e-1961.36Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7V1P39.6e-1963.64Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7TWI61.6e-1862.50Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 315..336

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032553.1Lag0032553.1mRNA