Lag0032548 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032548
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr11: 34438971 .. 34439300 (+)
RNA-Seq ExpressionLag0032548
SyntenyLag0032548
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACCGTTGGTATAGATGTTGCAGCGGTTAGAAACCGTCGCTATAGACTAAATAAACCGCTACTATAGATCCCTTTTCTTGTAGTGTGGGTGGGTTGTTCGTGACTCGGACAGATCCCTTGTCTGCTTCGGAGTGCACAAAATTAAGAAGAAATGGCCAGTCAAAGTGTTAGAAGCTTTGGCGATGTTGAGAGGTTTATCGGAATTTTCAAGTACCTATGATAGGAGAGCAATTCCAATCGAGGCGGAGTCAGATTCGCTGGAAGTCATCAACATCCTCGCCGGCGAGACAGAGGACCTCACCGAGGTGAAGTCTTTCACGGACTAA

mRNA sequence

ATGAAACCGTTGTGTGGGTGGGTTGTTCGTGACTCGGACAGATCCCTTGTCTGCTTCGGAGTGCACAAAATTAAGAAGAAATGGCCAGTCAAAGTGTTAGAAGCTTTGGCGATGTTGAGAGGTTTATCGGAATTTTCAAGTACCTATGATAGGAGAGCAATTCCAATCGAGGCGGAGTCAGATTCGCTGGAAGTCATCAACATCCTCGCCGGCGAGACAGAGGACCTCACCGAGGTGAAGTCTTTCACGGACTAA

Coding sequence (CDS)

ATGAAACCGTTGTGTGGGTGGGTTGTTCGTGACTCGGACAGATCCCTTGTCTGCTTCGGAGTGCACAAAATTAAGAAGAAATGGCCAGTCAAAGTGTTAGAAGCTTTGGCGATGTTGAGAGGTTTATCGGAATTTTCAAGTACCTATGATAGGAGAGCAATTCCAATCGAGGCGGAGTCAGATTCGCTGGAAGTCATCAACATCCTCGCCGGCGAGACAGAGGACCTCACCGAGGTGAAGTCTTTCACGGACTAA

Protein sequence

MKPLCGWVVRDSDRSLVCFGVHKIKKKWPVKVLEALAMLRGLSEFSSTYDRRAIPIEAESDSLEVINILAGETEDLTEVKSFTD
Homology
The following BLAST results are available for this feature:
BLAST of Lag0032548 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0032548 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 6..78
e-value: 4.8E-6
score: 26.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032548.1Lag0032548.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity