Lag0032526 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032526
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr11: 34022980 .. 34023342 (-)
RNA-Seq ExpressionLag0032526
SyntenyLag0032526
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGACTAGAAAAGTTAACTCAATCTCAAAGAGGAGCTCTTGATAAGTTCTTTGCGAAGGAATCACACACTCCTATTGAAAGTAATAATGTTGTTGATATTGATAATGAAAATATTTTGAGTGAAAATTGTGATAATTTGAATGATAATGCTGATAGTTGTGTTAATTTGGATGAAAATGTGTCTTTTGACAATGAAAACCCTTCTAGTGATGTTCCCATTCAAAATACTAATCCTATTACCGATAATCACACTAGTCAGCCTGAGAACAACGATGCTTTAAATGTTGAAAATGATATTGATGTTGCAAATATGCCTGATATATTTGATCCTAGAACTTGGGAGGTCTTAGTGCCAAAATGA

mRNA sequence

ATGAGACTAGAAAAGTTAACTCAATCTCAAAGAGGAGCTCTTGATAAGTTCTTTGCGAAGGAATCACACACTCCTATTGAAAGTAATAATGTTGTTGATATTGATAATGAAAATATTTTGAGTGAAAATTGTGATAATTTGAATGATAATGCTGATAGTTGTGTTAATTTGGATGAAAATGTGTCTTTTGACAATGAAAACCCTTCTAGTGATGTTCCCATTCAAAATACTAATCCTATTACCGATAATCACACTAGTCAGCCTGAGAACAACGATGCTTTAAATGTTGAAAATGATATTGATGTTGCAAATATGCCTGATATATTTGATCCTAGAACTTGGGAGGTCTTAGTGCCAAAATGA

Coding sequence (CDS)

ATGAGACTAGAAAAGTTAACTCAATCTCAAAGAGGAGCTCTTGATAAGTTCTTTGCGAAGGAATCACACACTCCTATTGAAAGTAATAATGTTGTTGATATTGATAATGAAAATATTTTGAGTGAAAATTGTGATAATTTGAATGATAATGCTGATAGTTGTGTTAATTTGGATGAAAATGTGTCTTTTGACAATGAAAACCCTTCTAGTGATGTTCCCATTCAAAATACTAATCCTATTACCGATAATCACACTAGTCAGCCTGAGAACAACGATGCTTTAAATGTTGAAAATGATATTGATGTTGCAAATATGCCTGATATATTTGATCCTAGAACTTGGGAGGTCTTAGTGCCAAAATGA

Protein sequence

MRLEKLTQSQRGALDKFFAKESHTPIESNNVVDIDNENILSENCDNLNDNADSCVNLDENVSFDNENPSSDVPIQNTNPITDNHTSQPENNDALNVENDIDVANMPDIFDPRTWEVLVPK
Homology
BLAST of Lag0032526 vs. NCBI nr
Match: XP_010692630.1 (PREDICTED: zinc finger MYM-type protein 1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 79.3 bits (194), Expect = 2.4e-11
Identity = 57/120 (47.50%), Postives = 74/120 (61.67%), Query Frame = 0

Query: 2   RLEKLTQSQRGALDKFFAKESHTPIESNNVVDIDNENILSENCDNLNDNADSCVNLD-EN 61
           R+E+LTQSQRGALDKF  KESH   +SN  V +++E  L +NC N NDN    V LD +N
Sbjct: 20  RIEELTQSQRGALDKFVVKESHVGTQSNKNVVVNDEVALDDNCVNPNDN----VPLDRDN 79

Query: 62  VSFDNENPSSDVPIQNTNPITDNHTSQPENNDALNVENDIDVANMPDIFDPRTWEVLVPK 121
           +SFD   PS +  I + NP+ +N+ +  ENN  L+  ND       DIFDPR W+ L  K
Sbjct: 80  ISFDANVPSEN-DIGDNNPVENNNVAN-ENNHGLDESNDNQFG--LDIFDPRNWDTLNSK 131

BLAST of Lag0032526 vs. NCBI nr
Match: XP_010666463.1 (PREDICTED: chloride channel protein F-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 53/121 (43.80%), Postives = 73/121 (60.33%), Query Frame = 0

Query: 2   RLEKLTQSQRGALDKFFAKESHTPIESNNVVDIDNENILSENCDNLNDNADSCVNLD-EN 61
           R+E+LTQSQRGALDKF  KESH   +SNN V +++E +L +NC   NDN    V LD +N
Sbjct: 20  RIEELTQSQRGALDKFVVKESHIGTQSNNNVVVNDEVVLDDNCVIPNDN----VPLDRDN 79

Query: 62  VSFDNEN-PS-SDVPIQNTNPITDNHTSQPENNDALNVENDIDVANMP----DIFDPRTW 116
           +SFD  N PS +D+   + +    N     ENND +  +N  + +N      D+FDPR W
Sbjct: 80  ISFDANNVPSENDIGGNDNDDHAKNDNCVNENNDPIEKDNVANESNDNQFGLDVFDPRNW 136

BLAST of Lag0032526 vs. NCBI nr
Match: XP_010677688.1 (PREDICTED: zinc finger MYM-type protein 5-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 64.7 bits (156), Expect = 6.2e-07
Identity = 51/129 (39.53%), Postives = 68/129 (52.71%), Query Frame = 0

Query: 2   RLEKLTQSQRGALDKFFAKESHTPIESNNVVDIDNENILSENCDNLNDNADSCVNLDENV 61
           RLE+LTQS++GALDKF  KE H        + +DN+NI  EN  NL+D        +ENV
Sbjct: 20  RLEELTQSEKGALDKFIIKEPH--------IHVDNQNIEKENDKNLDDEV-----TNENV 79

Query: 62  SFDNENPSS----DVPIQNTNPITDNHTSQPE-NNDALNVENDIDVANMP-----DIFDP 121
             +N+N  S    D+PI+N N    N  S  + + D  +  ND +    P     DIFDP
Sbjct: 80  DMENQNVDSKNRGDMPIENDNLDNQNVVSNNDCDEDLEDNSNDNEKQETPFEPLFDIFDP 135

BLAST of Lag0032526 vs. NCBI nr
Match: XP_034197984.1 (suppressor of Mek1-like [Prunus dulcis])

HSP 1 Score: 62.4 bits (150), Expect = 3.1e-06
Identity = 43/121 (35.54%), Postives = 67/121 (55.37%), Query Frame = 0

Query: 2   RLEKLTQSQRGALDKFFAKESHTPIESNNVVDIDNENILSENCDNLNDNADSCV-NLDEN 61
           ++E+LTQSQRGALD+F  +ESH  I+ N   + + E    E   ++ +N D CV N ++N
Sbjct: 19  KIEELTQSQRGALDRFIVRESHATIDENIFNEQEQEQDDVEELQDIENNMDECVGNPEQN 78

Query: 62  VSFDNENPSSDVPIQNTNPITDNHTSQPENNDALNVENDIDVANMP-DIFDPRTWEVLVP 121
            + DNEN   D    +   + D       N +  N+ N+    ++P DI+DPR W+ + P
Sbjct: 79  ENDDNENVDID---DHNEDVEDVDIENHNNENVTNLFNEEPSQSIPLDIYDPRNWDNIDP 136

BLAST of Lag0032526 vs. NCBI nr
Match: XP_010684557.1 (PREDICTED: zinc finger MYM-type protein 1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 62.0 bits (149), Expect = 4.0e-06
Identity = 44/124 (35.48%), Postives = 67/124 (54.03%), Query Frame = 0

Query: 2   RLEKLTQSQRGALDKFFAKESHTPIESNNVVDIDNE----NILSENCDNLNDNADSCVNL 61
           RLE+LTQSQRGALDKF  KE H  +++ N+  +++E     + ++N D  N N DS    
Sbjct: 20  RLEELTQSQRGALDKFIIKEPHIHVDNQNIEKVNDEVLENEVTNKNVDMENQNVDSDNRG 79

Query: 62  DENVSFDNENPSSDVPIQNTNPITDN-HTSQPENNDALNVENDIDVANMPDIFDPRTWEV 121
           D ++  DN        + N N +++N +    E+N   N + +     + DIFDPR W+ 
Sbjct: 80  DVHIENDN--------LDNQNVVSNNDYDEDVEDNSNDNEKQETSFEPLFDIFDPRNWDA 135

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_010692630.12.4e-1147.50PREDICTED: zinc finger MYM-type protein 1-like [Beta vulgaris subsp. vulgaris][more]
XP_010666463.11.1e-0843.80PREDICTED: chloride channel protein F-like [Beta vulgaris subsp. vulgaris][more]
XP_010677688.16.2e-0739.53PREDICTED: zinc finger MYM-type protein 5-like [Beta vulgaris subsp. vulgaris][more]
XP_034197984.13.1e-0635.54suppressor of Mek1-like [Prunus dulcis][more]
XP_010684557.14.0e-0635.48PREDICTED: zinc finger MYM-type protein 1-like [Beta vulgaris subsp. vulgaris][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032526.1Lag0032526.1mRNA