Lag0032524 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0032524
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	F-box/kelch-repeat protein At1g23390
Location	chr11: 34005164 .. 34005541 (-)
RNA-Seq Expression	Lag0032524
Synteny	Lag0032524

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCATGTGGGAGAGTAAAAACAAAGCTAGAGGGAAAAGGGAGAGAGAGAATGAAATGAGAAGAAGAGGAAGAGAGGAAATTTACGACATGAAATCCAAAGCCTGTGATACGTGCGACGAACTGTCTTCGATCTTCGCCGATTACGCCACTGCCACATGGTTCTCGGTTGCCGTCGACAAATTCGGCGGCAATGTTTTTGTTCGACCCAATAGAGAAATCGTGGGTCAGATCGTATGGCATCGATTCAGATGTCTTTTCGGCGATAATCGGTTTTGCCAGCGGCGGGATGGTGGTTGTGGGGCTATTGGGGTCGCCGGCGGCGACGGGGAGGAGTGCCGGCGGTGGAGAGAAAAAGAGGGAGGAGGTGGGGGATGA

mRNA sequence

ATGGGCATGTGGGAGAGTAAAAACAAAGCTAGAGGGAAAAGGGAGAGAGAGAATGAAATGAGAAGAAGAGGAAGAGAGGAAATTTACGACATGAAATCCAAAGCCTGTGATACGTGCGACGAACTGTCTTCGATCTTCGCCGATTACGCCACTGCCACATGGTTCTCGGTTGCCGTCGACAAATTCGGCGGCAATGTTTTTGTTCGACCCAATAGAGAAATCGTGGGTCAGATCGTATGGCATCGATTCAGATGTCTTTTCGGCGATAATCGGTTTTGCCAGCGGCGGGATGGTGGTTGTGGGGCTATTGGGGTCGCCGGCGGCGACGGGGAGGAGTGCCGGCGGTGGAGAGAAAAAGAGGGAGGAGGTGGGGGATGA

Coding sequence (CDS)

ATGGGCATGTGGGAGAGTAAAAACAAAGCTAGAGGGAAAAGGGAGAGAGAGAATGAAATGAGAAGAAGAGGAAGAGAGGAAATTTACGACATGAAATCCAAAGCCTGTGATACGTGCGACGAACTGTCTTCGATCTTCGCCGATTACGCCACTGCCACATGGTTCTCGGTTGCCGTCGACAAATTCGGCGGCAATGTTTTTGTTCGACCCAATAGAGAAATCGTGGGTCAGATCGTATGGCATCGATTCAGATGTCTTTTCGGCGATAATCGGTTTTGCCAGCGGCGGGATGGTGGTTGTGGGGCTATTGGGGTCGCCGGCGGCGACGGGGAGGAGTGCCGGCGGTGGAGAGAAAAAGAGGGAGGAGGTGGGGGATGA

Protein sequence

MGMWESKNKARGKRERENEMRRRGREEIYDMKSKACDTCDELSSIFADYATATWFSVAVDKFGGNVFVRPNREIVGQIVWHRFRCLFGDNRFCQRRDGGCGAIGVAGGDGEECRRWREKEGGGGG

Homology

[Close]

BLAST of Lag0032524 vs. NCBI nr
Match: XP_022994769.1 (F-box/kelch-repeat protein At1g23390 [Cucurbita maxima])

HSP 1 Score: 57.8 bits (138), Expect = 7.9e-05
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 27  EIYDMKSKACDTCDELSSIFADYATATWFSVAVD 61
           EIY++KSK  DTC+EL SIFA+YATA WFS+AVD
Sbjct: 163 EIYELKSKTWDTCEELPSIFAEYATAMWFSIAVD 196

[Close]

BLAST of Lag0032524 vs. NCBI nr
Match: XP_038891457.1 (LOW QUALITY PROTEIN: F-box/kelch-repeat protein At1g23390 [Benincasa hispida])

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-04
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 27  EIYDMKSKACDTCDELSSIFADYATATWFSVAVDKF 63
           EIYD++SK  DTC EL SIFA++ TATWFSVAVD++
Sbjct: 157 EIYDLESKMWDTCGELPSIFAEFTTATWFSVAVDEY 192

[Close]

BLAST of Lag0032524 vs. NCBI nr
Match: KAG6601515.1 (F-box/kelch-repeat protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032295.1 F-box/kelch-repeat protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.5 bits (132), Expect = 3.9e-04
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 27  EIYDMKSKACDTCDELSSIFADYATATWFSVAVD 61
           EI+D+KS   DTC+EL SIFA+YATA WFS+AVD
Sbjct: 163 EIHDLKSNTWDTCEELPSIFAEYATAMWFSIAVD 196

[Close]

BLAST of Lag0032524 vs. NCBI nr
Match: XP_022956902.1 (F-box/kelch-repeat protein At1g23390 [Cucurbita moschata])

HSP 1 Score: 55.5 bits (132), Expect = 3.9e-04
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 27  EIYDMKSKACDTCDELSSIFADYATATWFSVAVD 61
           EI+D+KS   DTC+EL SIFA+YATA WFS+AVD
Sbjct: 163 EIHDLKSNTWDTCEELPSIFAEYATAMWFSIAVD 196

[Close]

BLAST of Lag0032524 vs. NCBI nr
Match: XP_023552273.1 (F-box/kelch-repeat protein At1g23390 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 55.5 bits (132), Expect = 3.9e-04
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 27  EIYDMKSKACDTCDELSSIFADYATATWFSVAVD 61
           EI+D+KS   DTC+EL SIFA+YATA WFS+AVD
Sbjct: 163 EIHDLKSNTWDTCEELPSIFAEYATAMWFSIAVD 196

The following BLAST results are available for this feature:

BLAST of Lag0032524 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022994769.1	7.9e-05	73.53	F-box/kelch-repeat protein At1g23390 [Cucurbita maxima]	[more]
XP_038891457.1	1.0e-04	69.44	LOW QUALITY PROTEIN: F-box/kelch-repeat protein At1g23390 [Benincasa hispida]	[more]
KAG6601515.1	3.9e-04	70.59	F-box/kelch-repeat protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG...	[more]
XP_022956902.1	3.9e-04	70.59	F-box/kelch-repeat protein At1g23390 [Cucurbita moschata]	[more]
XP_023552273.1	3.9e-04	70.59	F-box/kelch-repeat protein At1g23390 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0032524 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0032524.1	Lag0032524.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus