Lag0032519 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0032519
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr11: 33947728 .. 33948201 (-)
RNA-Seq Expression	Lag0032519
Synteny	Lag0032519

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGACATGGCGGCAATTAGAGAGCTCTCTGATCTTGTCGGATCTCTCGATTTCACACAAGCAGATCGTACACCTCCGATTCTCTTCATCTTCTTCATTATCCCCAAATCCCATTCCCTTTCTTTCAACAAAATCCCCAAACTGGACGATGGGAAGGCTGCTCTTGATCCCGGCCTGCAGATCGGTGGCCGGAACGGTGACGAGCGAGGGGCAGGGGCCTTGGGTGATGAAGACGTAGCTGGTGGGGCGCTCGAAGGGAGAGTCGGCGTCGAGGTCCGGCGAGGGCTTGAGGAGGCCCAAATGGGCGGCGAGAAGCTTCAATTGGAGCAGGATTCTGGCGAAGAAATGGACGATTTGAGAGCATCTTTGGCCGTTAATGGCGAAATAGAGGAACCCCATCAGATTTTTGTGGAAGGAAATTCCCAAAATCCCGCTCCTCTGCTTTTCGTGGTTTTGTTTTTGATGCGTTAA

mRNA sequence

ATGGAAGACATGGCGGCAATTAGAGAGCTCTCTGATCTTGTCGGATCTCTCGATTTCACACAAGCAGATCGTACACCTCCGATTCTCTTCATCTTCTTCATTATCCCCAAATCCCATTCCCTTTCTTTCAACAAAATCCCCAAACTGGACGATGGGAAGGCTGCTCTTGATCCCGGCCTGCAGATCGGTGGCCGGAACGGTGACGAGCGAGGGGCAGGGGCCTTGGGTGATGAAGACGTAGCTGGTGGGGCGCTCGAAGGGAGAGTCGGCGTCGAGGTCCGGCGAGGGCTTGAGGAGGCCCAAATGGGCGGCGAGAAGCTTCAATTGGAGCAGGATTCTGGCGAAGAAATGGACGATTTGAGAGCATCTTTGGCCGTTAATGGCGAAATAGAGGAACCCCATCAGATTTTTGTGGAAGGAAATTCCCAAAATCCCGCTCCTCTGCTTTTCGTGGTTTTGTTTTTGATGCGTTAA

Coding sequence (CDS)

ATGGAAGACATGGCGGCAATTAGAGAGCTCTCTGATCTTGTCGGATCTCTCGATTTCACACAAGCAGATCGTACACCTCCGATTCTCTTCATCTTCTTCATTATCCCCAAATCCCATTCCCTTTCTTTCAACAAAATCCCCAAACTGGACGATGGGAAGGCTGCTCTTGATCCCGGCCTGCAGATCGGTGGCCGGAACGGTGACGAGCGAGGGGCAGGGGCCTTGGGTGATGAAGACGTAGCTGGTGGGGCGCTCGAAGGGAGAGTCGGCGTCGAGGTCCGGCGAGGGCTTGAGGAGGCCCAAATGGGCGGCGAGAAGCTTCAATTGGAGCAGGATTCTGGCGAAGAAATGGACGATTTGAGAGCATCTTTGGCCGTTAATGGCGAAATAGAGGAACCCCATCAGATTTTTGTGGAAGGAAATTCCCAAAATCCCGCTCCTCTGCTTTTCGTGGTTTTGTTTTTGATGCGTTAA

Protein sequence

MEDMAAIRELSDLVGSLDFTQADRTPPILFIFFIIPKSHSLSFNKIPKLDDGKAALDPGLQIGGRNGDERGAGALGDEDVAGGALEGRVGVEVRRGLEEAQMGGEKLQLEQDSGEEMDDLRASLAVNGEIEEPHQIFVEGNSQNPAPLLFVVLFLMR

Homology

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BLAST of Lag0032519 vs. NCBI nr
Match: KAG6579597.1 (hypothetical protein SDJN03_24045, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-23
Identity = 66/100 (66.00%), Postives = 78/100 (78.00%), Query Frame = 0


Query: 45  KIPKLDDGKAALDPGLQIGGRNGDERGAGALGDEDVAGGALEGRVGVEVRRGLEEAQMGG 104
           KIPKLDD +A LDPGLQI  RNGD+R AGA+G+E+V G  LEGRVG+ +RRGLEEA    
Sbjct: 45  KIPKLDDWEAVLDPGLQISHRNGDQRRAGAIGEEEVTGRRLEGRVGMVLRRGLEEA---- 104

Query: 105 EKLQLEQDSGEEMDDLRASLAVNGEIEEPHQIFVEGNSQN 145
              + E+DSGEEM+DLRAS+AVNGEIEE HQIFV+    N
Sbjct: 105 ---ETEKDSGEEMEDLRASVAVNGEIEEAHQIFVDLTEPN 137

The following BLAST results are available for this feature:

BLAST of Lag0032519 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6579597.1	1.6e-23	66.00	hypothetical protein SDJN03_24045, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0032519 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0032519.1	Lag0032519.1	mRNA