Lag0032518 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032518
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Locationchr11: 33934759 .. 33935783 (+)
RNA-Seq ExpressionLag0032518
SyntenyLag0032518
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCAACATCGAGCACTTCATCAGTTGGAAATGACCGGGTACCGGCTTTGCCTTCTTCCTCCACCATCACTCTCCAGTCACAACACCTGTTACAACCCAGTGACTCAATCCTCATACATCTACACCTCTCTCGACTACTCAAACCAGACCCCTAAATCCCAATATTCCTCCATTTTAATCGACATTCGCCCAAAACCCCTCTATACCAGCCAAATTCCAATATCTGTCGACGTCCCCTTCATCTCTACCTTTCTTCCCCGCCTTGAACCTTGCTCCCTCCTTTTTCCCTCCGACTCAGCCGTTAACGACACCCTATCCGACTCTCACTCCTCCGCTCAACATCAAGCTCTCAGATTCTAATTATCTCTTATGGAAAAACCAACTGCTCAACCATATTATTGCTTTTGACATGGAGAGTTTCATCAATGGGACGCCAGCTCCACCGAAATTTCTGGATGTAGCTCAAACCCAGGTAAATCCCTAATTTCTAATTTGGCAAAAGTATAATCGTACTTTGATGAGCTGGATATATTCTTCTTTGAACGAGGATAAATTAGGAGAGATTATTGGTTGTTCCTCTAAATATGAAATCTGGGAGCACCTTCGTTTTGTGTATGAGTCGTCTTCCACTGTTAGAATCATGGGTCTTCGGTCACAGCTTCAAAAAATTAGGAAATATCGTCAGTCGGTTTCCCAGTATCTTGCCTAGATTAAGGATGTCGCTAACAAATTTTCTACAATTGGTGAGCCCTTGTCTTACCGTGATCACTTAGGTTACATTTTAGAGGGACTAGGAATTGAATATAATCCTTTTGTTACTTCGATTCAAAATAGGAATGATCAACCTTCTCTAGCTGATGTTCGTAGCCTTCTTCTTGCTTACGAAACCCGTCTTGAAAAACAATCCTCTGTCGACAACCTTAACTTAGTTCAGGAAAATCAAGCCCATCTTTCTGTGAACAAAATACCTCCAAGCGTTTCCAGAAACCTTAGCATAACTCAAAGCCTAATAACCAACTGA

mRNA sequence

ATGGCATCAACATCGAGCACTTCATCAGTTGGAAATGACCGGGTACCGGCTTTGCCTTCTTCCTCCACCATCACTCTCCAGTCACAACACCTGTTACAACCCACCAAATTCCAATATCTGTCGACGTCCCCTTCATCTCTACCTTTCTTCCCCGCCTTGAACCTTGCTCCCTCCTTTTTCCCTCCGACTCAGCCGTTAACGACACCCTATCCGACTCTCACTCCTCCGCTCAACATCAAGCTCTCAGATTCTAATTATCTCTTATGGAAAAACCAACTGCTCAACCATATTATTGCTTTTGACATGGAGAGTTTCATCAATGGGACGCCAGCTCCACCGAAATTTCTGGATGTAGCTCAAACCCAGATTAAGGATGTCGCTAACAAATTTTCTACAATTGGTGAGCCCTTGTCTTACCGTGATCACTTAGGTTACATTTTAGAGGGACTAGGAATTGAATATAATCCTTTTGTTACTTCGATTCAAAATAGGAATGATCAACCTTCTCTAGCTGATGTTCGTAGCCTTCTTCTTGCTTACGAAACCCGTCTTGAAAAACAATCCTCTGTCGACAACCTTAACTTAGTTCAGGAAAATCAAGCCCATCTTTCTGTGAACAAAATACCTCCAAGCGTTTCCAGAAACCTTAGCATAACTCAAAGCCTAATAACCAACTGA

Coding sequence (CDS)

ATGGCATCAACATCGAGCACTTCATCAGTTGGAAATGACCGGGTACCGGCTTTGCCTTCTTCCTCCACCATCACTCTCCAGTCACAACACCTGTTACAACCCACCAAATTCCAATATCTGTCGACGTCCCCTTCATCTCTACCTTTCTTCCCCGCCTTGAACCTTGCTCCCTCCTTTTTCCCTCCGACTCAGCCGTTAACGACACCCTATCCGACTCTCACTCCTCCGCTCAACATCAAGCTCTCAGATTCTAATTATCTCTTATGGAAAAACCAACTGCTCAACCATATTATTGCTTTTGACATGGAGAGTTTCATCAATGGGACGCCAGCTCCACCGAAATTTCTGGATGTAGCTCAAACCCAGATTAAGGATGTCGCTAACAAATTTTCTACAATTGGTGAGCCCTTGTCTTACCGTGATCACTTAGGTTACATTTTAGAGGGACTAGGAATTGAATATAATCCTTTTGTTACTTCGATTCAAAATAGGAATGATCAACCTTCTCTAGCTGATGTTCGTAGCCTTCTTCTTGCTTACGAAACCCGTCTTGAAAAACAATCCTCTGTCGACAACCTTAACTTAGTTCAGGAAAATCAAGCCCATCTTTCTGTGAACAAAATACCTCCAAGCGTTTCCAGAAACCTTAGCATAACTCAAAGCCTAATAACCAACTGA

Protein sequence

MASTSSTSSVGNDRVPALPSSSTITLQSQHLLQPTKFQYLSTSPSSLPFFPALNLAPSFFPPTQPLTTPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFINGTPAPPKFLDVAQTQIKDVANKFSTIGEPLSYRDHLGYILEGLGIEYNPFVTSIQNRNDQPSLADVRSLLLAYETRLEKQSSVDNLNLVQENQAHLSVNKIPPSVSRNLSITQSLITN
Homology
BLAST of Lag0032518 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-31
Identity = 93/239 (38.91%), Postives = 120/239 (50.21%), Query Frame = 0

Query: 57  PSFF--PPTQPLTTPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFINGT-PAPP 116
           P+F   PP      P+PTL  PLN+KL+D+N+LLWKNQLLN +IA  +  +++GT   PP
Sbjct: 8   PNFLAQPPNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIANGLRGYLDGTIMPPP 67

Query: 117 KFLDVAQTQ--------------------------------------------------- 176
           +FLD  Q Q                                                   
Sbjct: 68  QFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLETTHDIWSSLTRVYDSK 127

Query: 177 ----------------------------IKDVANKFSTIGEPLSYRDHLGYILEGLGIEY 211
                                       IK++A+KF+ +GEPLSYRDHL ++L+GLG EY
Sbjct: 128 TTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYRDHLAHVLDGLGSEY 187

BLAST of Lag0032518 vs. NCBI nr
Match: XP_038887133.1 (uncharacterized protein LOC120077323 [Benincasa hispida])

HSP 1 Score: 126.7 bits (317), Expect = 2.5e-25
Identity = 58/85 (68.24%), Postives = 73/85 (85.88%), Query Frame = 0

Query: 122 QIKDVANKFSTIGEPLSYRDHLGYILEGLGIEYNPFVTSIQNRNDQPSLADVRSLLLAYE 181
           QIKDV + F+ IGEPLSYRDHL YILEGLG EYNPFV+SI NR ++PS+ADVR+LL+ Y+
Sbjct: 52  QIKDVLDNFAAIGEPLSYRDHLSYILEGLGSEYNPFVSSIHNRTNRPSIADVRNLLITYD 111

Query: 182 TRLEKQSSVDNLNLVQENQAHLSVN 207
           +RLEKQ++ D+L L+Q N AHLS+N
Sbjct: 112 SRLEKQTATDHLQLIQANVAHLSIN 136

BLAST of Lag0032518 vs. NCBI nr
Match: XP_022148871.1 (uncharacterized protein LOC111017438 [Momordica charantia])

HSP 1 Score: 118.2 bits (295), Expect = 8.9e-23
Identity = 58/94 (61.70%), Postives = 76/94 (80.85%), Query Frame = 0

Query: 116 LDVAQ--TQIKDVANKFSTIGEPLSYRDHLGYILEGLGIEYNPFVTSIQNRNDQPSLADV 175
           L V+Q   +IK++  K S+IGEP+S +DH+ YI+EGLGIEYN FVTSIQNR+D  +L DV
Sbjct: 16  LSVSQYLAKIKEITGKLSSIGEPISLKDHISYIIEGLGIEYNAFVTSIQNRSDMXTLEDV 75

Query: 176 RSLLLAYETRLEKQSSVDNLNLVQENQAHLSVNK 208
           R+LLLAY+ RLEKQ+SVD LN+VQ N A+L +N+
Sbjct: 76  RTLLLAYDYRLEKQNSVDQLNVVQANVANLQLNR 109

BLAST of Lag0032518 vs. NCBI nr
Match: PON47862.1 (hypothetical protein TorRG33x02_321990 [Trema orientale])

HSP 1 Score: 106.7 bits (265), Expect = 2.7e-19
Identity = 74/229 (32.31%), Postives = 99/229 (43.23%), Query Frame = 0

Query: 61  PPTQPLTTPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFINGT-PAPPKFLDVA 120
           PP  PL    P++  P  IKL   NYL+WKNQLLN IIA  +E FI+G+ P PP+F D A
Sbjct: 37  PPLPPLPI-LPSMNQPFTIKLDADNYLIWKNQLLNVIIANGLEDFIDGSRPCPPRFTDPA 96

Query: 121 QTQI-------------------------------------------------------- 180
           +  +                                                        
Sbjct: 97  RQIVNAEYIAWQRFNRLIMSWIYASLTQGVMGQIVGYASAFEIWEALNQIYTSSSLAKIT 156

Query: 181 -----------------------KDVANKFSTIGEPLSYRDHLGYILEGLGIEYNPFVTS 210
                                  K++ N  + +GEP+S +DHL Y+  GL  EYN FVTS
Sbjct: 157 ELRAKLQNLRKDGLTAIEYIQKHKNICNTLAAVGEPVSCKDHLLYLFGGLDREYNAFVTS 216

BLAST of Lag0032518 vs. NCBI nr
Match: XP_038891713.1 (uncharacterized protein LOC120081111 [Benincasa hispida])

HSP 1 Score: 105.9 bits (263), Expect = 4.6e-19
Identity = 52/84 (61.90%), Postives = 67/84 (79.76%), Query Frame = 0

Query: 121 TQIKDVANKFSTIGEPLSYRDHLGYILEGLGIEYNPFVTSIQNRNDQPSLADVRSLLLAY 180
           +QIKDVA+KFS +GE +SYRDHL +IL+GLG EYN FVTSIQN  D  S+ DV SLLL+Y
Sbjct: 22  SQIKDVADKFSVVGESISYRDHLTHILDGLGSEYNAFVTSIQNHVDNLSVEDVWSLLLSY 81

Query: 181 ETRLEKQSSVDNLNLVQENQAHLS 205
           E +LEKQ+++D+LN+ Q   + LS
Sbjct: 82  EAQLEKQNAIDHLNIAQAYLSKLS 105

BLAST of Lag0032518 vs. ExPASy TrEMBL
Match: A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 5.1e-32
Identity = 93/239 (38.91%), Postives = 120/239 (50.21%), Query Frame = 0

Query: 57  PSFF--PPTQPLTTPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFINGT-PAPP 116
           P+F   PP      P+PTL  PLN+KL+D+N+LLWKNQLLN +IA  +  +++GT   PP
Sbjct: 8   PNFLAQPPNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIANGLRGYLDGTIMPPP 67

Query: 117 KFLDVAQTQ--------------------------------------------------- 176
           +FLD  Q Q                                                   
Sbjct: 68  QFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLETTHDIWSSLTRVYDSK 127

Query: 177 ----------------------------IKDVANKFSTIGEPLSYRDHLGYILEGLGIEY 211
                                       IK++A+KF+ +GEPLSYRDHL ++L+GLG EY
Sbjct: 128 TTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYRDHLAHVLDGLGSEY 187

BLAST of Lag0032518 vs. ExPASy TrEMBL
Match: A0A6J1D6N7 (uncharacterized protein LOC111017438 OS=Momordica charantia OX=3673 GN=LOC111017438 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 4.3e-23
Identity = 58/94 (61.70%), Postives = 76/94 (80.85%), Query Frame = 0

Query: 116 LDVAQ--TQIKDVANKFSTIGEPLSYRDHLGYILEGLGIEYNPFVTSIQNRNDQPSLADV 175
           L V+Q   +IK++  K S+IGEP+S +DH+ YI+EGLGIEYN FVTSIQNR+D  +L DV
Sbjct: 16  LSVSQYLAKIKEITGKLSSIGEPISLKDHISYIIEGLGIEYNAFVTSIQNRSDMXTLEDV 75

Query: 176 RSLLLAYETRLEKQSSVDNLNLVQENQAHLSVNK 208
           R+LLLAY+ RLEKQ+SVD LN+VQ N A+L +N+
Sbjct: 76  RTLLLAYDYRLEKQNSVDQLNVVQANVANLQLNR 109

BLAST of Lag0032518 vs. ExPASy TrEMBL
Match: A0A2P5BGF8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-19
Identity = 74/229 (32.31%), Postives = 99/229 (43.23%), Query Frame = 0

Query: 61  PPTQPLTTPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFINGT-PAPPKFLDVA 120
           PP  PL    P++  P  IKL   NYL+WKNQLLN IIA  +E FI+G+ P PP+F D A
Sbjct: 37  PPLPPLPI-LPSMNQPFTIKLDADNYLIWKNQLLNVIIANGLEDFIDGSRPCPPRFTDPA 96

Query: 121 QTQI-------------------------------------------------------- 180
           +  +                                                        
Sbjct: 97  RQIVNAEYIAWQRFNRLIMSWIYASLTQGVMGQIVGYASAFEIWEALNQIYTSSSLAKIT 156

Query: 181 -----------------------KDVANKFSTIGEPLSYRDHLGYILEGLGIEYNPFVTS 210
                                  K++ N  + +GEP+S +DHL Y+  GL  EYN FVTS
Sbjct: 157 ELRAKLQNLRKDGLTAIEYIQKHKNICNTLAAVGEPVSCKDHLLYLFGGLDREYNAFVTS 216

BLAST of Lag0032518 vs. ExPASy TrEMBL
Match: A0A438FTV3 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_055887 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.9e-19
Identity = 67/180 (37.22%), Postives = 93/180 (51.67%), Query Frame = 0

Query: 75  PPLNIKLSDSNYLLWKNQLLNHIIAFDMESFINGTPAPPKFLDVA--------------- 134
           P   +KL + NYL+WKNQLLN II   +  FI+ + + P  +  +               
Sbjct: 47  PKDEVKLDNGNYLIWKNQLLNVIIVNRLADFIDRSQSCPSSIPQSTITNHQSRLWRFGTP 106

Query: 135 -----------------QT-------------QIKDVANKFSTIGEPLSYRDHLGYILEG 194
                            QT             ++K + N  + IGEP+S +DHL Y+  G
Sbjct: 107 LIRFTLPLLWRGRVTKLQTLKKDGLSIGEYIQKLKSICNSLAAIGEPVSKKDHLIYLFSG 166

Query: 195 LGIEYNPFVTSIQNRNDQPSLADVRSLLLAYETRLEKQSSVDNLNLVQENQAHLSVNKIP 210
           L  EYNPFVTSIQNR+DQP++  + SLLL+Y+ RLE+Q+ V +LN  Q + AHL  NK P
Sbjct: 167 LDREYNPFVTSIQNRSDQPTIEQIHSLLLSYDFRLEQQNFV-SLNSAQVHMAHL--NKKP 223

BLAST of Lag0032518 vs. ExPASy TrEMBL
Match: A0A438GC62 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_210 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-17
Identity = 78/230 (33.91%), Postives = 99/230 (43.04%), Query Frame = 0

Query: 61  PPTQPLTTPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMESFIN-GTPAPPKFLDVA 120
           P    +T P P+L+  L+IKL ++N LL K+QLLN IIA  +E FI+    +PPK+LD A
Sbjct: 24  PQITQMTLPSPSLSQSLSIKLDETNLLLRKSQLLNVIIANGLEDFIDPDQSSPPKYLDAA 83

Query: 121 QTQI-------------------------------------------------------- 180
             Q+                                                        
Sbjct: 84  CRQVNPEFVQWDRLNQLVMSWIYSSLTPGMVGQIVEYSTARDIWASLNDEYESPSIATVM 143

Query: 181 -----------------------KDVANKFSTIGEPLSYRDHLGYILEGLGIEYNPFVTS 211
                                  K V ++F+TIGEPLSYRD L  ILEGL  EY+ FVTS
Sbjct: 144 SLNSQLQRIKKIDIPLSEYLSRLKFVFDEFATIGEPLSYRDKLTRILEGLPEEYDNFVTS 203

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155181.11.0e-3138.91uncharacterized protein LOC111022315 [Momordica charantia][more]
XP_038887133.12.5e-2568.24uncharacterized protein LOC120077323 [Benincasa hispida][more]
XP_022148871.18.9e-2361.70uncharacterized protein LOC111017438 [Momordica charantia][more]
PON47862.12.7e-1932.31hypothetical protein TorRG33x02_321990 [Trema orientale][more]
XP_038891713.14.6e-1961.90uncharacterized protein LOC120081111 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DQX75.1e-3238.91uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1D6N74.3e-2361.70uncharacterized protein LOC111017438 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A2P5BGF81.3e-1932.31Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV... [more]
A0A438FTV32.9e-1937.22Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_055887 PE=4 SV=1[more]
A0A438GC621.2e-1733.91Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 122..186
e-value: 5.5E-8
score: 32.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR47481FAMILY NOT NAMEDcoord: 122..201

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032518.1Lag0032518.1mRNA