Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATTCTCAAGCTCTCCCTGACCTCCCTCTTCTGTGTCTTGAGCTTCACCATGCTTCCCTCCTCGCTCGCTCAAGACTCACCTCAGGACTTCGTCAATGCCCACAACGCGGCCCGCGCCCAAGTTGGCGTCGGGCCTGTGCGATGGGACGATACGGTGGCAAGCTACGCTCGACGATATGCCAACCAGCGCATCAATGACTGTAAGCTGATACACTCTGGTGGTCCTTACGGGGAGAATCTTGCATGGGGCAGCCCTGACTTGTCCGGCACTGCTGCAGTTCAGTTGTGGGTGGATGAGAAGCAATACTACAACTATGGCACCAATACTTGTGCTTCTGGTAAGGTGTGTGGCCATTACACTCAGGTTGTGTGGAGAAATTCGGTGAGAATTGGATGTGCGAAAGTTAAATGCAACAACCGTGGTGGTACATTTATCATTTGCAACTATGACCCTAGAGGCAATATTGTAGGGCAAAAACCATATTGA
mRNA sequence
ATGGATATTCTCAAGCTCTCCCTGACCTCCCTCTTCTGTGTCTTGAGCTTCACCATGCTTCCCTCCTCGCTCGCTCAAGACTCACCTCAGGACTTCGTCAATGCCCACAACGCGGCCCGCGCCCAAGTTGGCGTCGGGCCTGTGCGATGGGACGATACGGTGGCAAGCTACGCTCGACGATATGCCAACCAGCGCATCAATGACTGTAAGCTGATACACTCTGGTGGTCCTTACGGGGAGAATCTTGCATGGGGCAGCCCTGACTTGTCCGGCACTGCTGCAGTTCAGTTGTGGGTGGATGAGAAGCAATACTACAACTATGGCACCAATACTTGTGCTTCTGGTAAGGTGTGTGGCCATTACACTCAGGTTGTGTGGAGAAATTCGGTGAGAATTGGATGTGCGAAAGTTAAATGCAACAACCGTGGTGGTACATTTATCATTTGCAACTATGACCCTAGAGGCAATATTGTAGGGCAAAAACCATATTGA
Coding sequence (CDS)
ATGGATATTCTCAAGCTCTCCCTGACCTCCCTCTTCTGTGTCTTGAGCTTCACCATGCTTCCCTCCTCGCTCGCTCAAGACTCACCTCAGGACTTCGTCAATGCCCACAACGCGGCCCGCGCCCAAGTTGGCGTCGGGCCTGTGCGATGGGACGATACGGTGGCAAGCTACGCTCGACGATATGCCAACCAGCGCATCAATGACTGTAAGCTGATACACTCTGGTGGTCCTTACGGGGAGAATCTTGCATGGGGCAGCCCTGACTTGTCCGGCACTGCTGCAGTTCAGTTGTGGGTGGATGAGAAGCAATACTACAACTATGGCACCAATACTTGTGCTTCTGGTAAGGTGTGTGGCCATTACACTCAGGTTGTGTGGAGAAATTCGGTGAGAATTGGATGTGCGAAAGTTAAATGCAACAACCGTGGTGGTACATTTATCATTTGCAACTATGACCCTAGAGGCAATATTGTAGGGCAAAAACCATATTGA
Protein sequence
MDILKLSLTSLFCVLSFTMLPSSLAQDSPQDFVNAHNAARAQVGVGPVRWDDTVASYARRYANQRINDCKLIHSGGPYGENLAWGSPDLSGTAAVQLWVDEKQYYNYGTNTCASGKVCGHYTQVVWRNSVRIGCAKVKCNNRGGTFIICNYDPRGNIVGQKPY
Homology
BLAST of Lag0032511 vs. NCBI nr
Match:
XP_038887491.1 (pathogenesis-related protein 1-like [Benincasa hispida])
HSP 1 Score: 315.5 bits (807), Expect = 2.8e-82
Identity = 144/163 (88.34%), Postives = 157/163 (96.32%), Query Frame = 0
Query: 1 MDILKLSLTSLFCVLSFTMLPSSLAQDSPQDFVNAHNAARAQVGVGPVRWDDTVASYARR 60
MD+LKLSL SLFCVLSFTMLPSSLAQDSPQD++NAHNAARAQVGVGPV+WD+ VAS+AR+
Sbjct: 1 MDLLKLSL-SLFCVLSFTMLPSSLAQDSPQDYLNAHNAARAQVGVGPVQWDERVASFARQ 60
Query: 61 YANQRINDCKLIHSGGPYGENLAWGSPDLSGTAAVQLWVDEKQYYNYGTNTCASGKVCGH 120
YANQRINDCKLIHSGGPYGEN+AWG PDLSGTAAVQ+WV+EKQ+YNYGTNTCA+GKVCGH
Sbjct: 61 YANQRINDCKLIHSGGPYGENIAWGWPDLSGTAAVQMWVNEKQFYNYGTNTCAAGKVCGH 120
Query: 121 YTQVVWRNSVRIGCAKVKCNNRGGTFIICNYDPRGNIVGQKPY 164
YTQVVWR SVRIGCAKVKC N GGTFIICNYDPRGNI+GQKPY
Sbjct: 121 YTQVVWRKSVRIGCAKVKCTNNGGTFIICNYDPRGNIIGQKPY 162
BLAST of Lag0032511 vs. NCBI nr
Match:
XP_008455064.1 (PREDICTED: pathogenesis-related protein PRB1-2-like [Cucumis melo] >KAA0031384.1 pathogenesis-related protein PRB1-2-like [Cucumis melo var. makuwa] >TYK06836.1 pathogenesis-related protein PRB1-2-like [Cucumis melo var. makuwa])
HSP 1 Score: 307.4 bits (786), Expect = 7.5e-80
Identity = 138/164 (84.15%), Postives = 156/164 (95.12%), Query Frame = 0
Query: 1 MDILKLSLT-SLFCVLSFTMLPSSLAQDSPQDFVNAHNAARAQVGVGPVRWDDTVASYAR 60
MD+LKLSL+ SLFCVL+F MLPSSLAQDSP+DFVNAHNAARAQVGVGPV WD+ VAS+AR
Sbjct: 1 MDVLKLSLSLSLFCVLTFIMLPSSLAQDSPRDFVNAHNAARAQVGVGPVHWDERVASFAR 60
Query: 61 RYANQRINDCKLIHSGGPYGENLAWGSPDLSGTAAVQLWVDEKQYYNYGTNTCASGKVCG 120
+YANQRINDC+L+HSGGPYGEN+AWG PDLSGTAAVQ+WV+EKQ+YNYG+NTCA+GKVCG
Sbjct: 61 QYANQRINDCRLVHSGGPYGENIAWGMPDLSGTAAVQMWVNEKQFYNYGSNTCAAGKVCG 120
Query: 121 HYTQVVWRNSVRIGCAKVKCNNRGGTFIICNYDPRGNIVGQKPY 164
HYTQVVWRNSVRIGCAKV+C N GTFIICNY+PRGNI+GQKPY
Sbjct: 121 HYTQVVWRNSVRIGCAKVRCTNNRGTFIICNYEPRGNIIGQKPY 164
BLAST of Lag0032511 vs. NCBI nr
Match:
XP_022952868.1 (pathogenesis-related protein 1-like [Cucurbita moschata])
HSP 1 Score: 290.8 bits (743), Expect = 7.3e-75
Identity = 129/163 (79.14%), Postives = 148/163 (90.80%), Query Frame = 0
Query: 1 MDILKLSLTSLFCVLSFTMLPSSLAQDSPQDFVNAHNAARAQVGVGPVRWDDTVASYARR 60
MD+ KLSL+ + VLSF M SSLAQDSPQDFVNAHNAARAQVGVGPV+WD+ VAS+AR+
Sbjct: 1 MDLFKLSLSIFYVVLSFAMFRSSLAQDSPQDFVNAHNAARAQVGVGPVQWDERVASFARQ 60
Query: 61 YANQRINDCKLIHSGGPYGENLAWGSPDLSGTAAVQLWVDEKQYYNYGTNTCASGKVCGH 120
YANQRINDC+L+HSGGPYGEN+AWGSPDLSGT AV++WVDEKQ+YN NTCA+G+VCGH
Sbjct: 61 YANQRINDCRLVHSGGPYGENIAWGSPDLSGTNAVRMWVDEKQFYNPSANTCAAGRVCGH 120
Query: 121 YTQVVWRNSVRIGCAKVKCNNRGGTFIICNYDPRGNIVGQKPY 164
YTQVVWRNSVRIGCAKV+C N GTFIICNYDPRGNI+GQ+P+
Sbjct: 121 YTQVVWRNSVRIGCAKVRCTNNRGTFIICNYDPRGNIIGQRPF 163
BLAST of Lag0032511 vs. NCBI nr
Match:
XP_022972506.1 (pathogenesis-related protein PR-1 type-like [Cucurbita maxima])
HSP 1 Score: 290.4 bits (742), Expect = 9.5e-75
Identity = 129/163 (79.14%), Postives = 147/163 (90.18%), Query Frame = 0
Query: 1 MDILKLSLTSLFCVLSFTMLPSSLAQDSPQDFVNAHNAARAQVGVGPVRWDDTVASYARR 60
MD+ KLSL+ + VLSF M SSLAQDSPQDFVNAHNAARAQVGVGP+RWD+ VAS+AR+
Sbjct: 1 MDLFKLSLSLFYVVLSFAMFHSSLAQDSPQDFVNAHNAARAQVGVGPIRWDERVASFARQ 60
Query: 61 YANQRINDCKLIHSGGPYGENLAWGSPDLSGTAAVQLWVDEKQYYNYGTNTCASGKVCGH 120
YANQRINDC+L+HSGGPYGEN+AWGSPDLSGT AV++WVDEKQ+YN TNTCA+GKVCGH
Sbjct: 61 YANQRINDCRLVHSGGPYGENIAWGSPDLSGTNAVRMWVDEKQFYNPSTNTCAAGKVCGH 120
Query: 121 YTQVVWRNSVRIGCAKVKCNNRGGTFIICNYDPRGNIVGQKPY 164
YTQVVWRNSVRIGCAKV+C N GTFI CNYDP GN+VGQ+P+
Sbjct: 121 YTQVVWRNSVRIGCAKVRCTNNRGTFITCNYDPPGNVVGQRPF 163
BLAST of Lag0032511 vs. NCBI nr
Match:
XP_022927845.1 (pathogenesis-related protein PRB1-3-like [Cucurbita moschata])
HSP 1 Score: 289.7 bits (740), Expect = 1.6e-74
Identity = 134/163 (82.21%), Postives = 147/163 (90.18%), Query Frame = 0
Query: 1 MDILKLSLTSLFCVLSFTMLPSSLAQDSPQDFVNAHNAARAQVGVGPVRWDDTVASYARR 60
MD+ KLSL SLFCV+S MLPS+LAQD+PQDFVNAHNAARA VGVGPV+WD TVASYA++
Sbjct: 1 MDLFKLSL-SLFCVVSVAMLPSALAQDTPQDFVNAHNAARALVGVGPVQWDATVASYAQQ 60
Query: 61 YANQRINDCKLIHSGGPYGENLAWGSPDLSGTAAVQLWVDEKQYYNYGTNTCASGKVCGH 120
YAN RINDC+LIHSGGPYGEN+AWGS +LSGTAAVQLWV EKQYYNY TN+CA+GKVCGH
Sbjct: 61 YANLRINDCQLIHSGGPYGENIAWGSSNLSGTAAVQLWVAEKQYYNYNTNSCAAGKVCGH 120
Query: 121 YTQVVWRNSVRIGCAKVKCNNRGGTFIICNYDPRGNIVGQKPY 164
YTQVVWRNSVRIGCAKV C N GTFI CNYDPRGNI+GQ PY
Sbjct: 121 YTQVVWRNSVRIGCAKVTCANNAGTFITCNYDPRGNIIGQMPY 162
BLAST of Lag0032511 vs. ExPASy Swiss-Prot
Match:
P33154 (Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=At2g14610 PE=1 SV=1)
HSP 1 Score: 218.4 bits (555), Expect = 6.0e-56
Identity = 100/153 (65.36%), Postives = 116/153 (75.82%), Query Frame = 0
Query: 11 LFCVLSFTMLPSSLAQDSPQDFVNAHNAARAQVGVGPVRWDDTVASYARRYANQRINDCK 70
+F L ++ S AQDSPQD++ HN AR VGVGP++WD+ VA+YAR YA Q +C+
Sbjct: 12 VFVALVGALVLPSKAQDSPQDYLRVHNQARGAVGVGPMQWDERVAAYARSYAEQLRGNCR 71
Query: 71 LIHSGGPYGENLAWGSPDLSGTAAVQLWVDEKQYYNYGTNTCASGKVCGHYTQVVWRNSV 130
LIHSGGPYGENLAWGS DLSG +AV +WV EK YNY NTC VCGHYTQVVWR SV
Sbjct: 72 LIHSGGPYGENLAWGSGDLSGVSAVNMWVSEKANYNYAANTC--NGVCGHYTQVVWRKSV 131
Query: 131 RIGCAKVKCNNRGGTFIICNYDPRGNIVGQKPY 164
R+GCAKV+CNN GGT I CNYDPRGN V +KPY
Sbjct: 132 RLGCAKVRCNN-GGTIISCNYDPRGNYVNEKPY 161
BLAST of Lag0032511 vs. ExPASy Swiss-Prot
Match:
P35793 (Pathogenesis-related protein PRB1-3 OS=Hordeum vulgare OX=4513 PE=2 SV=1)
HSP 1 Score: 217.2 bits (552), Expect = 1.3e-55
Identity = 100/155 (64.52%), Postives = 117/155 (75.48%), Query Frame = 0
Query: 11 LFCVLSFTMLPSSLAQDSPQDFVNAHNAARAQVGVGPVRWDDTVASYARRYANQRINDCK 70
L +S M+ S AQ+SPQD+V+ HNAARA VGVG V W + ++A+ YANQRINDCK
Sbjct: 10 LALAMSAAMVNLSQAQNSPQDYVSPHNAARAAVGVGAVSWSTKLQAFAQNYANQRINDCK 69
Query: 71 LIHSGGPYGENLAWGS--PDLSGTAAVQLWVDEKQYYNYGTNTCASGKVCGHYTQVVWRN 130
L HSGGPYGEN+ WGS D + AV WV EK+ Y+YG+NTCA+GKVCGHYTQVVWR
Sbjct: 70 LQHSGGPYGENIFWGSAGADWKASDAVNSWVSEKKDYDYGSNTCAAGKVCGHYTQVVWRA 129
Query: 131 SVRIGCAKVKCNNRGGTFIICNYDPRGNIVGQKPY 164
S IGCA+V CNN G FI CNY+PRGNIVGQKPY
Sbjct: 130 STSIGCARVVCNNNRGVFITCNYEPRGNIVGQKPY 164
BLAST of Lag0032511 vs. ExPASy Swiss-Prot
Match:
P35792 (Pathogenesis-related protein PRB1-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1)
HSP 1 Score: 216.9 bits (551), Expect = 1.7e-55
Identity = 99/155 (63.87%), Postives = 117/155 (75.48%), Query Frame = 0
Query: 11 LFCVLSFTMLPSSLAQDSPQDFVNAHNAARAQVGVGPVRWDDTVASYARRYANQRINDCK 70
L ++ M+ S AQ+SPQD+V+ HNAAR+ VGVG V W + ++A+ YANQRINDCK
Sbjct: 10 LALAMAAAMVNLSQAQNSPQDYVSPHNAARSAVGVGAVSWSTKLQAFAQNYANQRINDCK 69
Query: 71 LIHSGGPYGENLAWGS--PDLSGTAAVQLWVDEKQYYNYGTNTCASGKVCGHYTQVVWRN 130
L HSGGPYGEN+ WGS D AV WV+EK+ YNYG+NTCA+GKVCGHYTQVVWR
Sbjct: 70 LQHSGGPYGENIFWGSAGADWKAADAVNSWVNEKKDYNYGSNTCAAGKVCGHYTQVVWRA 129
Query: 131 SVRIGCAKVKCNNRGGTFIICNYDPRGNIVGQKPY 164
S IGCA+V CNN G FI CNY+PRGNIVGQKPY
Sbjct: 130 STSIGCARVVCNNNRGVFITCNYEPRGNIVGQKPY 164
BLAST of Lag0032511 vs. ExPASy Swiss-Prot
Match:
Q9ZNS4 (Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=PRB1 PE=2 SV=1)
HSP 1 Score: 215.3 bits (547), Expect = 5.1e-55
Identity = 98/139 (70.50%), Postives = 111/139 (79.86%), Query Frame = 0
Query: 25 AQDSPQDFVNAHNAARAQVGVGPVRWDDTVASYARRYANQRINDCKLIHSGGPYGENLAW 84
AQDS QD+VNAHN AR+Q+GVGP++WD+ +A+YAR YANQ DC+L+HS GPYGENLA
Sbjct: 26 AQDSQQDYVNAHNQARSQIGVGPMQWDEGLAAYARNYANQLKGDCRLVHSRGPYGENLAK 85
Query: 85 GSPDLSGTAAVQLWVDEKQYYNYGTNTCASGKVCGHYTQVVWRNSVRIGCAKVKCNNRGG 144
DLSG AAV LWV+EK YNY TNTC VCGHYTQVVWRNSVR+GCAKV+CNN GG
Sbjct: 86 SGGDLSGVAAVNLWVNEKANYNYDTNTC--NGVCGHYTQVVWRNSVRLGCAKVRCNN-GG 145
Query: 145 TFIICNYDPRGNIVGQKPY 164
T I CNYDP GN QKPY
Sbjct: 146 TIISCNYDPPGNYANQKPY 161
BLAST of Lag0032511 vs. ExPASy Swiss-Prot
Match:
Q05968 (Pathogenesis-related protein 1 OS=Hordeum vulgare OX=4513 PE=2 SV=1)
HSP 1 Score: 214.5 bits (545), Expect = 8.7e-55
Identity = 97/155 (62.58%), Postives = 117/155 (75.48%), Query Frame = 0
Query: 11 LFCVLSFTMLPSSLAQDSPQDFVNAHNAARAQVGVGPVRWDDTVASYARRYANQRINDCK 70
L ++ M+ S AQ+SPQD+V+ HNAAR+ VGVG V W + ++A+ YANQRINDCK
Sbjct: 10 LALAMAAAMVNLSQAQNSPQDYVSPHNAARSAVGVGAVSWSTKLQAFAQNYANQRINDCK 69
Query: 71 LIHSGGPYGENLAWGS--PDLSGTAAVQLWVDEKQYYNYGTNTCASGKVCGHYTQVVWRN 130
L HSGGPYGEN+ WGS D + AV WV EK+ Y+YG+NTCA+GKVCGHYTQVVWR
Sbjct: 70 LQHSGGPYGENIFWGSAGADWKASDAVNSWVSEKKDYDYGSNTCAAGKVCGHYTQVVWRA 129
Query: 131 SVRIGCAKVKCNNRGGTFIICNYDPRGNIVGQKPY 164
S IGCA+V CNN G FI CNY+PRGNI+GQKPY
Sbjct: 130 STSIGCARVVCNNNRGVFITCNYEPRGNIIGQKPY 164
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038887491.1 | 2.8e-82 | 88.34 | pathogenesis-related protein 1-like [Benincasa hispida] | [more] |
XP_008455064.1 | 7.5e-80 | 84.15 | PREDICTED: pathogenesis-related protein PRB1-2-like [Cucumis melo] >KAA0031384.1... | [more] |
XP_022952868.1 | 7.3e-75 | 79.14 | pathogenesis-related protein 1-like [Cucurbita moschata] | [more] |
XP_022972506.1 | 9.5e-75 | 79.14 | pathogenesis-related protein PR-1 type-like [Cucurbita maxima] | [more] |
XP_022927845.1 | 1.6e-74 | 82.21 | pathogenesis-related protein PRB1-3-like [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
P33154 | 6.0e-56 | 65.36 | Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=At2g14610 PE=1... | [more] |
P35793 | 1.3e-55 | 64.52 | Pathogenesis-related protein PRB1-3 OS=Hordeum vulgare OX=4513 PE=2 SV=1 | [more] |
P35792 | 1.7e-55 | 63.87 | Pathogenesis-related protein PRB1-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1 | [more] |
Q9ZNS4 | 5.1e-55 | 70.50 | Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=PRB1 PE=2 SV=1 | [more] |
Q05968 | 8.7e-55 | 62.58 | Pathogenesis-related protein 1 OS=Hordeum vulgare OX=4513 PE=2 SV=1 | [more] |