Lag0032511 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032511
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionpathogenesis-related protein 1-like
Locationchr11: 33834676 .. 33835167 (+)
RNA-Seq ExpressionLag0032511
SyntenyLag0032511
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATTCTCAAGCTCTCCCTGACCTCCCTCTTCTGTGTCTTGAGCTTCACCATGCTTCCCTCCTCGCTCGCTCAAGACTCACCTCAGGACTTCGTCAATGCCCACAACGCGGCCCGCGCCCAAGTTGGCGTCGGGCCTGTGCGATGGGACGATACGGTGGCAAGCTACGCTCGACGATATGCCAACCAGCGCATCAATGACTGTAAGCTGATACACTCTGGTGGTCCTTACGGGGAGAATCTTGCATGGGGCAGCCCTGACTTGTCCGGCACTGCTGCAGTTCAGTTGTGGGTGGATGAGAAGCAATACTACAACTATGGCACCAATACTTGTGCTTCTGGTAAGGTGTGTGGCCATTACACTCAGGTTGTGTGGAGAAATTCGGTGAGAATTGGATGTGCGAAAGTTAAATGCAACAACCGTGGTGGTACATTTATCATTTGCAACTATGACCCTAGAGGCAATATTGTAGGGCAAAAACCATATTGA

mRNA sequence

ATGGATATTCTCAAGCTCTCCCTGACCTCCCTCTTCTGTGTCTTGAGCTTCACCATGCTTCCCTCCTCGCTCGCTCAAGACTCACCTCAGGACTTCGTCAATGCCCACAACGCGGCCCGCGCCCAAGTTGGCGTCGGGCCTGTGCGATGGGACGATACGGTGGCAAGCTACGCTCGACGATATGCCAACCAGCGCATCAATGACTGTAAGCTGATACACTCTGGTGGTCCTTACGGGGAGAATCTTGCATGGGGCAGCCCTGACTTGTCCGGCACTGCTGCAGTTCAGTTGTGGGTGGATGAGAAGCAATACTACAACTATGGCACCAATACTTGTGCTTCTGGTAAGGTGTGTGGCCATTACACTCAGGTTGTGTGGAGAAATTCGGTGAGAATTGGATGTGCGAAAGTTAAATGCAACAACCGTGGTGGTACATTTATCATTTGCAACTATGACCCTAGAGGCAATATTGTAGGGCAAAAACCATATTGA

Coding sequence (CDS)

ATGGATATTCTCAAGCTCTCCCTGACCTCCCTCTTCTGTGTCTTGAGCTTCACCATGCTTCCCTCCTCGCTCGCTCAAGACTCACCTCAGGACTTCGTCAATGCCCACAACGCGGCCCGCGCCCAAGTTGGCGTCGGGCCTGTGCGATGGGACGATACGGTGGCAAGCTACGCTCGACGATATGCCAACCAGCGCATCAATGACTGTAAGCTGATACACTCTGGTGGTCCTTACGGGGAGAATCTTGCATGGGGCAGCCCTGACTTGTCCGGCACTGCTGCAGTTCAGTTGTGGGTGGATGAGAAGCAATACTACAACTATGGCACCAATACTTGTGCTTCTGGTAAGGTGTGTGGCCATTACACTCAGGTTGTGTGGAGAAATTCGGTGAGAATTGGATGTGCGAAAGTTAAATGCAACAACCGTGGTGGTACATTTATCATTTGCAACTATGACCCTAGAGGCAATATTGTAGGGCAAAAACCATATTGA

Protein sequence

MDILKLSLTSLFCVLSFTMLPSSLAQDSPQDFVNAHNAARAQVGVGPVRWDDTVASYARRYANQRINDCKLIHSGGPYGENLAWGSPDLSGTAAVQLWVDEKQYYNYGTNTCASGKVCGHYTQVVWRNSVRIGCAKVKCNNRGGTFIICNYDPRGNIVGQKPY
Homology
BLAST of Lag0032511 vs. NCBI nr
Match: XP_038887491.1 (pathogenesis-related protein 1-like [Benincasa hispida])

HSP 1 Score: 315.5 bits (807), Expect = 2.8e-82
Identity = 144/163 (88.34%), Postives = 157/163 (96.32%), Query Frame = 0

Query: 1   MDILKLSLTSLFCVLSFTMLPSSLAQDSPQDFVNAHNAARAQVGVGPVRWDDTVASYARR 60
           MD+LKLSL SLFCVLSFTMLPSSLAQDSPQD++NAHNAARAQVGVGPV+WD+ VAS+AR+
Sbjct: 1   MDLLKLSL-SLFCVLSFTMLPSSLAQDSPQDYLNAHNAARAQVGVGPVQWDERVASFARQ 60

Query: 61  YANQRINDCKLIHSGGPYGENLAWGSPDLSGTAAVQLWVDEKQYYNYGTNTCASGKVCGH 120
           YANQRINDCKLIHSGGPYGEN+AWG PDLSGTAAVQ+WV+EKQ+YNYGTNTCA+GKVCGH
Sbjct: 61  YANQRINDCKLIHSGGPYGENIAWGWPDLSGTAAVQMWVNEKQFYNYGTNTCAAGKVCGH 120

Query: 121 YTQVVWRNSVRIGCAKVKCNNRGGTFIICNYDPRGNIVGQKPY 164
           YTQVVWR SVRIGCAKVKC N GGTFIICNYDPRGNI+GQKPY
Sbjct: 121 YTQVVWRKSVRIGCAKVKCTNNGGTFIICNYDPRGNIIGQKPY 162

BLAST of Lag0032511 vs. NCBI nr
Match: XP_008455064.1 (PREDICTED: pathogenesis-related protein PRB1-2-like [Cucumis melo] >KAA0031384.1 pathogenesis-related protein PRB1-2-like [Cucumis melo var. makuwa] >TYK06836.1 pathogenesis-related protein PRB1-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 307.4 bits (786), Expect = 7.5e-80
Identity = 138/164 (84.15%), Postives = 156/164 (95.12%), Query Frame = 0

Query: 1   MDILKLSLT-SLFCVLSFTMLPSSLAQDSPQDFVNAHNAARAQVGVGPVRWDDTVASYAR 60
           MD+LKLSL+ SLFCVL+F MLPSSLAQDSP+DFVNAHNAARAQVGVGPV WD+ VAS+AR
Sbjct: 1   MDVLKLSLSLSLFCVLTFIMLPSSLAQDSPRDFVNAHNAARAQVGVGPVHWDERVASFAR 60

Query: 61  RYANQRINDCKLIHSGGPYGENLAWGSPDLSGTAAVQLWVDEKQYYNYGTNTCASGKVCG 120
           +YANQRINDC+L+HSGGPYGEN+AWG PDLSGTAAVQ+WV+EKQ+YNYG+NTCA+GKVCG
Sbjct: 61  QYANQRINDCRLVHSGGPYGENIAWGMPDLSGTAAVQMWVNEKQFYNYGSNTCAAGKVCG 120

Query: 121 HYTQVVWRNSVRIGCAKVKCNNRGGTFIICNYDPRGNIVGQKPY 164
           HYTQVVWRNSVRIGCAKV+C N  GTFIICNY+PRGNI+GQKPY
Sbjct: 121 HYTQVVWRNSVRIGCAKVRCTNNRGTFIICNYEPRGNIIGQKPY 164

BLAST of Lag0032511 vs. NCBI nr
Match: XP_022952868.1 (pathogenesis-related protein 1-like [Cucurbita moschata])

HSP 1 Score: 290.8 bits (743), Expect = 7.3e-75
Identity = 129/163 (79.14%), Postives = 148/163 (90.80%), Query Frame = 0

Query: 1   MDILKLSLTSLFCVLSFTMLPSSLAQDSPQDFVNAHNAARAQVGVGPVRWDDTVASYARR 60
           MD+ KLSL+  + VLSF M  SSLAQDSPQDFVNAHNAARAQVGVGPV+WD+ VAS+AR+
Sbjct: 1   MDLFKLSLSIFYVVLSFAMFRSSLAQDSPQDFVNAHNAARAQVGVGPVQWDERVASFARQ 60

Query: 61  YANQRINDCKLIHSGGPYGENLAWGSPDLSGTAAVQLWVDEKQYYNYGTNTCASGKVCGH 120
           YANQRINDC+L+HSGGPYGEN+AWGSPDLSGT AV++WVDEKQ+YN   NTCA+G+VCGH
Sbjct: 61  YANQRINDCRLVHSGGPYGENIAWGSPDLSGTNAVRMWVDEKQFYNPSANTCAAGRVCGH 120

Query: 121 YTQVVWRNSVRIGCAKVKCNNRGGTFIICNYDPRGNIVGQKPY 164
           YTQVVWRNSVRIGCAKV+C N  GTFIICNYDPRGNI+GQ+P+
Sbjct: 121 YTQVVWRNSVRIGCAKVRCTNNRGTFIICNYDPRGNIIGQRPF 163

BLAST of Lag0032511 vs. NCBI nr
Match: XP_022972506.1 (pathogenesis-related protein PR-1 type-like [Cucurbita maxima])

HSP 1 Score: 290.4 bits (742), Expect = 9.5e-75
Identity = 129/163 (79.14%), Postives = 147/163 (90.18%), Query Frame = 0

Query: 1   MDILKLSLTSLFCVLSFTMLPSSLAQDSPQDFVNAHNAARAQVGVGPVRWDDTVASYARR 60
           MD+ KLSL+  + VLSF M  SSLAQDSPQDFVNAHNAARAQVGVGP+RWD+ VAS+AR+
Sbjct: 1   MDLFKLSLSLFYVVLSFAMFHSSLAQDSPQDFVNAHNAARAQVGVGPIRWDERVASFARQ 60

Query: 61  YANQRINDCKLIHSGGPYGENLAWGSPDLSGTAAVQLWVDEKQYYNYGTNTCASGKVCGH 120
           YANQRINDC+L+HSGGPYGEN+AWGSPDLSGT AV++WVDEKQ+YN  TNTCA+GKVCGH
Sbjct: 61  YANQRINDCRLVHSGGPYGENIAWGSPDLSGTNAVRMWVDEKQFYNPSTNTCAAGKVCGH 120

Query: 121 YTQVVWRNSVRIGCAKVKCNNRGGTFIICNYDPRGNIVGQKPY 164
           YTQVVWRNSVRIGCAKV+C N  GTFI CNYDP GN+VGQ+P+
Sbjct: 121 YTQVVWRNSVRIGCAKVRCTNNRGTFITCNYDPPGNVVGQRPF 163

BLAST of Lag0032511 vs. NCBI nr
Match: XP_022927845.1 (pathogenesis-related protein PRB1-3-like [Cucurbita moschata])

HSP 1 Score: 289.7 bits (740), Expect = 1.6e-74
Identity = 134/163 (82.21%), Postives = 147/163 (90.18%), Query Frame = 0

Query: 1   MDILKLSLTSLFCVLSFTMLPSSLAQDSPQDFVNAHNAARAQVGVGPVRWDDTVASYARR 60
           MD+ KLSL SLFCV+S  MLPS+LAQD+PQDFVNAHNAARA VGVGPV+WD TVASYA++
Sbjct: 1   MDLFKLSL-SLFCVVSVAMLPSALAQDTPQDFVNAHNAARALVGVGPVQWDATVASYAQQ 60

Query: 61  YANQRINDCKLIHSGGPYGENLAWGSPDLSGTAAVQLWVDEKQYYNYGTNTCASGKVCGH 120
           YAN RINDC+LIHSGGPYGEN+AWGS +LSGTAAVQLWV EKQYYNY TN+CA+GKVCGH
Sbjct: 61  YANLRINDCQLIHSGGPYGENIAWGSSNLSGTAAVQLWVAEKQYYNYNTNSCAAGKVCGH 120

Query: 121 YTQVVWRNSVRIGCAKVKCNNRGGTFIICNYDPRGNIVGQKPY 164
           YTQVVWRNSVRIGCAKV C N  GTFI CNYDPRGNI+GQ PY
Sbjct: 121 YTQVVWRNSVRIGCAKVTCANNAGTFITCNYDPRGNIIGQMPY 162

BLAST of Lag0032511 vs. ExPASy Swiss-Prot
Match: P33154 (Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=At2g14610 PE=1 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 6.0e-56
Identity = 100/153 (65.36%), Postives = 116/153 (75.82%), Query Frame = 0

Query: 11  LFCVLSFTMLPSSLAQDSPQDFVNAHNAARAQVGVGPVRWDDTVASYARRYANQRINDCK 70
           +F  L   ++  S AQDSPQD++  HN AR  VGVGP++WD+ VA+YAR YA Q   +C+
Sbjct: 12  VFVALVGALVLPSKAQDSPQDYLRVHNQARGAVGVGPMQWDERVAAYARSYAEQLRGNCR 71

Query: 71  LIHSGGPYGENLAWGSPDLSGTAAVQLWVDEKQYYNYGTNTCASGKVCGHYTQVVWRNSV 130
           LIHSGGPYGENLAWGS DLSG +AV +WV EK  YNY  NTC    VCGHYTQVVWR SV
Sbjct: 72  LIHSGGPYGENLAWGSGDLSGVSAVNMWVSEKANYNYAANTC--NGVCGHYTQVVWRKSV 131

Query: 131 RIGCAKVKCNNRGGTFIICNYDPRGNIVGQKPY 164
           R+GCAKV+CNN GGT I CNYDPRGN V +KPY
Sbjct: 132 RLGCAKVRCNN-GGTIISCNYDPRGNYVNEKPY 161

BLAST of Lag0032511 vs. ExPASy Swiss-Prot
Match: P35793 (Pathogenesis-related protein PRB1-3 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.3e-55
Identity = 100/155 (64.52%), Postives = 117/155 (75.48%), Query Frame = 0

Query: 11  LFCVLSFTMLPSSLAQDSPQDFVNAHNAARAQVGVGPVRWDDTVASYARRYANQRINDCK 70
           L   +S  M+  S AQ+SPQD+V+ HNAARA VGVG V W   + ++A+ YANQRINDCK
Sbjct: 10  LALAMSAAMVNLSQAQNSPQDYVSPHNAARAAVGVGAVSWSTKLQAFAQNYANQRINDCK 69

Query: 71  LIHSGGPYGENLAWGS--PDLSGTAAVQLWVDEKQYYNYGTNTCASGKVCGHYTQVVWRN 130
           L HSGGPYGEN+ WGS   D   + AV  WV EK+ Y+YG+NTCA+GKVCGHYTQVVWR 
Sbjct: 70  LQHSGGPYGENIFWGSAGADWKASDAVNSWVSEKKDYDYGSNTCAAGKVCGHYTQVVWRA 129

Query: 131 SVRIGCAKVKCNNRGGTFIICNYDPRGNIVGQKPY 164
           S  IGCA+V CNN  G FI CNY+PRGNIVGQKPY
Sbjct: 130 STSIGCARVVCNNNRGVFITCNYEPRGNIVGQKPY 164

BLAST of Lag0032511 vs. ExPASy Swiss-Prot
Match: P35792 (Pathogenesis-related protein PRB1-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.7e-55
Identity = 99/155 (63.87%), Postives = 117/155 (75.48%), Query Frame = 0

Query: 11  LFCVLSFTMLPSSLAQDSPQDFVNAHNAARAQVGVGPVRWDDTVASYARRYANQRINDCK 70
           L   ++  M+  S AQ+SPQD+V+ HNAAR+ VGVG V W   + ++A+ YANQRINDCK
Sbjct: 10  LALAMAAAMVNLSQAQNSPQDYVSPHNAARSAVGVGAVSWSTKLQAFAQNYANQRINDCK 69

Query: 71  LIHSGGPYGENLAWGS--PDLSGTAAVQLWVDEKQYYNYGTNTCASGKVCGHYTQVVWRN 130
           L HSGGPYGEN+ WGS   D     AV  WV+EK+ YNYG+NTCA+GKVCGHYTQVVWR 
Sbjct: 70  LQHSGGPYGENIFWGSAGADWKAADAVNSWVNEKKDYNYGSNTCAAGKVCGHYTQVVWRA 129

Query: 131 SVRIGCAKVKCNNRGGTFIICNYDPRGNIVGQKPY 164
           S  IGCA+V CNN  G FI CNY+PRGNIVGQKPY
Sbjct: 130 STSIGCARVVCNNNRGVFITCNYEPRGNIVGQKPY 164

BLAST of Lag0032511 vs. ExPASy Swiss-Prot
Match: Q9ZNS4 (Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=PRB1 PE=2 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 5.1e-55
Identity = 98/139 (70.50%), Postives = 111/139 (79.86%), Query Frame = 0

Query: 25  AQDSPQDFVNAHNAARAQVGVGPVRWDDTVASYARRYANQRINDCKLIHSGGPYGENLAW 84
           AQDS QD+VNAHN AR+Q+GVGP++WD+ +A+YAR YANQ   DC+L+HS GPYGENLA 
Sbjct: 26  AQDSQQDYVNAHNQARSQIGVGPMQWDEGLAAYARNYANQLKGDCRLVHSRGPYGENLAK 85

Query: 85  GSPDLSGTAAVQLWVDEKQYYNYGTNTCASGKVCGHYTQVVWRNSVRIGCAKVKCNNRGG 144
              DLSG AAV LWV+EK  YNY TNTC    VCGHYTQVVWRNSVR+GCAKV+CNN GG
Sbjct: 86  SGGDLSGVAAVNLWVNEKANYNYDTNTC--NGVCGHYTQVVWRNSVRLGCAKVRCNN-GG 145

Query: 145 TFIICNYDPRGNIVGQKPY 164
           T I CNYDP GN   QKPY
Sbjct: 146 TIISCNYDPPGNYANQKPY 161

BLAST of Lag0032511 vs. ExPASy Swiss-Prot
Match: Q05968 (Pathogenesis-related protein 1 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 8.7e-55
Identity = 97/155 (62.58%), Postives = 117/155 (75.48%), Query Frame = 0

Query: 11  LFCVLSFTMLPSSLAQDSPQDFVNAHNAARAQVGVGPVRWDDTVASYARRYANQRINDCK 70
           L   ++  M+  S AQ+SPQD+V+ HNAAR+ VGVG V W   + ++A+ YANQRINDCK
Sbjct: 10  LALAMAAAMVNLSQAQNSPQDYVSPHNAARSAVGVGAVSWSTKLQAFAQNYANQRINDCK 69

Query: 71  LIHSGGPYGENLAWGS--PDLSGTAAVQLWVDEKQYYNYGTNTCASGKVCGHYTQVVWRN 130
           L HSGGPYGEN+ WGS   D   + AV  WV EK+ Y+YG+NTCA+GKVCGHYTQVVWR 
Sbjct: 70  LQHSGGPYGENIFWGSAGADWKASDAVNSWVSEKKDYDYGSNTCAAGKVCGHYTQVVWRA 129

Query: 131 SVRIGCAKVKCNNRGGTFIICNYDPRGNIVGQKPY 164
           S  IGCA+V CNN  G FI CNY+PRGNI+GQKPY
Sbjct: 130 STSIGCARVVCNNNRGVFITCNYEPRGNIIGQKPY 164

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038887491.12.8e-8288.34pathogenesis-related protein 1-like [Benincasa hispida][more]
XP_008455064.17.5e-8084.15PREDICTED: pathogenesis-related protein PRB1-2-like [Cucumis melo] >KAA0031384.1... [more]
XP_022952868.17.3e-7579.14pathogenesis-related protein 1-like [Cucurbita moschata][more]
XP_022972506.19.5e-7579.14pathogenesis-related protein PR-1 type-like [Cucurbita maxima][more]
XP_022927845.11.6e-7482.21pathogenesis-related protein PRB1-3-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
P331546.0e-5665.36Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=At2g14610 PE=1... [more]
P357931.3e-5564.52Pathogenesis-related protein PRB1-3 OS=Hordeum vulgare OX=4513 PE=2 SV=1[more]
P357921.7e-5563.87Pathogenesis-related protein PRB1-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1[more]
Q9ZNS45.1e-5570.50Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=PRB1 PE=2 SV=1[more]
Q059688.7e-5562.58Pathogenesis-related protein 1 OS=Hordeum vulgare OX=4513 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001283Cysteine-rich secretory protein-relatedPRINTSPR00837V5TPXLIKEcoord: 146..159
score: 52.86
coord: 94..107
score: 45.56
coord: 48..66
score: 38.34
coord: 118..134
score: 66.19
IPR001283Cysteine-rich secretory protein-relatedPANTHERPTHR10334CYSTEINE-RICH SECRETORY PROTEIN-RELATEDcoord: 21..163
IPR014044CAP domainSMARTSM00198SCP_3coord: 27..159
e-value: 1.4E-68
score: 243.9
IPR014044CAP domainPFAMPF00188CAPcoord: 33..151
e-value: 5.2E-23
score: 82.3
IPR035940CAP superfamilyGENE3D3.40.33.10CAPcoord: 27..163
e-value: 2.7E-48
score: 165.8
IPR035940CAP superfamilySUPERFAMILY55797PR-1-likecoord: 17..163
NoneNo IPR availablePANTHERPTHR10334:SF488PATHOGENESIS-RELATED PROTEIN 1coord: 21..163
NoneNo IPR availableCDDcd05381CAP_PR-1coord: 29..163
e-value: 1.43243E-96
score: 272.97
IPR018244Allergen V5/Tpx-1-related, conserved sitePROSITEPS01010CRISP_2coord: 146..157
IPR018244Allergen V5/Tpx-1-related, conserved sitePROSITEPS01009CRISP_1coord: 119..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032511.1Lag0032511.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005615 extracellular space
cellular_component GO:0005576 extracellular region