Lag0032468 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0032468
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ty3/gypsy retrotransposon protein
Location	chr11: 32986911 .. 32987674 (-)
RNA-Seq Expression	Lag0032468
Synteny	Lag0032468

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTAGGCCCAGTGCAAGCGTGGAGAACAACTACGACCAACACAATAGGCCAAAGTTAATACCTAAGATGATTGAAACCAACTCGATTAAAACCATCACTCTGCCCAATAACCCATCACCTCAACGAAAGAAGTTGTTTAAGCGTCTGACAGACTTAGAATTACAATCTCAAAAAGAAAAAGGCTTATGTTATCGATGCGATGAGAAGTTTTTCGTGGGGCATAAGTGTAAGGGAAAAGAGCTTAGATTGTTGATTGTGGACAACGATGTAGCTGCAAAACAGCACGCCAGCGAACATGTAGAAGGGAAGGAGAGTAAAGTGGAAGAGGTGGAAGACTCATCGTTGGAAGTAGATATGGCCGAACTTTCCCTCAACATAGTCGTCAAGTTCTCGTCACCGGGCACCCTCAAAATCAAAGGCAAGATCGAAGATAGGGACATGGTAATTTTGATCGATTGTGGGGCAACTCAAAACTTCATTTCCCAGCACCTCGTAGAGTAGATGAAGTTTCCCGTTTTAGAAACTCTTAATTACGAAATAATCATGGGAAAAGGGATCGCGGTGAAGGGAAGAGGAATCTTCAAGGGAGTAGTAGTTTCCATGAACGACATCACCGTAGTAGAGGATTTCTTACCCCTCAAACTTGGAAGTATAGATGTTATGATGTTATATTGGGCATGCAGTGGCTGAAGACACTCGACATGACCACTGCAGACCGGAAATCGCTCACTCTGTCGGACACGGGGATGAAAAAGTTGTGA

mRNA sequence

ATGCCTAGGCCCAGTGCAAGCGTGGAGAACAACTACGACCAACACAATAGGCCAAAGTTAATACCTAAGATGATTGAAACCAACTCGATTAAAACCATCACTCTGCCCAATAACCCATCACCTCAACGAAAGAAGTTGTTTAAGCGTCTGACAGACTTAGAATTACAATCTCAAAAAGAAAAAGGCTTATGTTATCGATGCGATGAGAAGTTTTTCGTGGGGCATAAGTGTAAGGGAAAAGAGCTTAGATTGTTGATTGTGGACAACGATGTAGCTGCAAAACAGCACGCCAGCGAACATGTAGAAGGGAAGGAGAGTAAAGTGGAAGAGGTGGAAGACTCATCGTTGGAAGTAGATATGGCCGAACTTTCCCTCAACATAGTCGTCAAGTTCTCGTCACCGGGCACCCTCAAAATCAAAGGCAAGATCGAAGATAGGGACATGTGGCTGAAGACACTCGACATGACCACTGCAGACCGGAAATCGCTCACTCTGTCGGACACGGGGATGAAAAAGTTGTGA

Coding sequence (CDS)

ATGCCTAGGCCCAGTGCAAGCGTGGAGAACAACTACGACCAACACAATAGGCCAAAGTTAATACCTAAGATGATTGAAACCAACTCGATTAAAACCATCACTCTGCCCAATAACCCATCACCTCAACGAAAGAAGTTGTTTAAGCGTCTGACAGACTTAGAATTACAATCTCAAAAAGAAAAAGGCTTATGTTATCGATGCGATGAGAAGTTTTTCGTGGGGCATAAGTGTAAGGGAAAAGAGCTTAGATTGTTGATTGTGGACAACGATGTAGCTGCAAAACAGCACGCCAGCGAACATGTAGAAGGGAAGGAGAGTAAAGTGGAAGAGGTGGAAGACTCATCGTTGGAAGTAGATATGGCCGAACTTTCCCTCAACATAGTCGTCAAGTTCTCGTCACCGGGCACCCTCAAAATCAAAGGCAAGATCGAAGATAGGGACATGTGGCTGAAGACACTCGACATGACCACTGCAGACCGGAAATCGCTCACTCTGTCGGACACGGGGATGAAAAAGTTGTGA

Protein sequence

MPRPSASVENNYDQHNRPKLIPKMIETNSIKTITLPNNPSPQRKKLFKRLTDLELQSQKEKGLCYRCDEKFFVGHKCKGKELRLLIVDNDVAAKQHASEHVEGKESKVEEVEDSSLEVDMAELSLNIVVKFSSPGTLKIKGKIEDRDMWLKTLDMTTADRKSLTLSDTGMKKL

Homology

[Close]

BLAST of Lag0032468 vs. NCBI nr
Match: XP_022154744.1 (uncharacterized protein LOC111021922 [Momordica charantia])

HSP 1 Score: 99.8 bits (247), Expect = 2.5e-17
Identity = 54/141 (38.30%), Postives = 90/141 (63.83%), Query Frame = 0


Query: 16  NRPKLIPKMIETNSIKTITLPNNPSP-----QRKKLFKRLTDLELQSQKEKGLCYRCDEK 75
           N PK  PK  ET + +T+TL     P     ++++  K+LT+ E Q +K+KGLC+R +EK
Sbjct: 247 NTPKTPPKTSETVTTRTVTLSGKSYPTAQPLRKEQTQKKLTETEYQRRKDKGLCFRSEEK 306

Query: 76  FFVGHKCKGKELRLLIVDNDVAAKQHASEHV---EGKESKVEEVEDSSLEVDMAELSLNI 135
           + +GH+CK +EL++ +V +D   +    E +   EG+E+ + E        ++AEL+LN 
Sbjct: 307 YSIGHRCKNQELKVFVVHDDEGMELDQEELIMSTEGRETTIVE--------EVAELALNT 366

Query: 136 VVKFSSPGTLKIKGKIEDRDM 149
           VV FS+PGT+K++G IED+++
Sbjct: 367 VVGFSTPGTMKLRGLIEDKEV 379

[Close]

BLAST of Lag0032468 vs. NCBI nr
Match: XP_019056647.1 (PREDICTED: uncharacterized protein LOC104801738 isoform X1 [Tarenaya hassleriana])

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-16
Identity = 46/107 (42.99%), Postives = 73/107 (68.22%), Query Frame = 0


Query: 42  QRKKLFKRLTDLELQSQKEKGLCYRCDEKFFVGHKCKGKELRLLIVDNDVAAKQHASEHV 101
           ++K  FKR++D E + +++KGLC+RCDEKFFVGH+CK KEL++++ +  +   +   E  
Sbjct: 107 EKKSTFKRMSDAEFEEKRKKGLCFRCDEKFFVGHRCKQKELQVILAEEVMETGEELKEEQ 166

Query: 102 EGKESKVEEVEDSSLEVDMAELSLNIVVKFSSPGTLKIKGKIEDRDM 149
           + +E  +EE      E + AELSLN VV  +SP TLKI+G + D+++
Sbjct: 167 DNEEGNMEE------EGEFAELSLNSVVGLTSPKTLKIRGSVGDQEV 207

[Close]

BLAST of Lag0032468 vs. NCBI nr
Match: KAA0062470.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK27412.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 6.2e-16
Identity = 60/137 (43.80%), Postives = 88/137 (64.23%), Query Frame = 0


Query: 17  RPKLIPKMIETNSIKTITLPNNPS---PQRKKLFKRLTDLELQSQKEKGLCYRCDEKFFV 76
           R + + + I T+S ++I L N  S    QR+  F+R T+ ELQ+Q++KGLCYRCDE F  
Sbjct: 86  RNRGMARSIPTSSNQSINLQNMASRNGGQRENNFRRWTNSELQAQRDKGLCYRCDEPFSK 145

Query: 77  GHKCKGKELRLLIVDNDVAAKQHASEHVEGKES--KVEEVEDSSLEVDMAELSLNIVVKF 136
           GH+CK KE RL +V +D+       E +E ++S  + E VE SS    + ELSLN VV  
Sbjct: 146 GHRCKNKEFRLCVVADDL-------EDIEMEDSTHEGEMVEVSS----VVELSLNSVVGL 205

Query: 137 SSPGTLKIKGKIEDRDM 149
           ++PGT K+KG ++DR++
Sbjct: 206 TAPGTFKVKGTVDDREI 211

[Close]

BLAST of Lag0032468 vs. NCBI nr
Match: KAA0039532.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK15285.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-15
Identity = 49/108 (45.37%), Postives = 71/108 (65.74%), Query Frame = 0


Query: 42  QRKKLFKRLTDLELQSQKEKGLCYRCDEKFFVGHKCKGKELRLLIVDNDVAAKQHASEHV 101
           +R+  F+R TD ELQ+QK+KGLCY CDE F  GH+CK +ELRL +V +D+          
Sbjct: 203 RREPSFRRWTDSELQAQKDKGLCYYCDEPFSKGHRCKNRELRLCVVADDLG--------- 262

Query: 102 EGKESKVEEVEDSSLEV-DMAELSLNIVVKFSSPGTLKIKGKIEDRDM 149
              E   EE+ +  +E+  + ELSLN VV  ++PGT K++GK+EDR++
Sbjct: 263 -DTEMSEEEIGEGMVEIGPIVELSLNSVVGLTAPGTFKLRGKLEDREV 300

[Close]

BLAST of Lag0032468 vs. NCBI nr
Match: KAA0037088.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK06556.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 3.1e-15
Identity = 52/131 (39.69%), Postives = 82/131 (62.60%), Query Frame = 0


Query: 19  KLIPKMIETNSIKTITLPNNPSPQRKKLFKRLTDLELQSQKEKGLCYRCDEKFFVGHKCK 78
           K++P    +N+++   +      +R+  ++R TD ELQ++KEKGLCYRCDE F  GH+CK
Sbjct: 307 KVLPHPSNSNTVQAKAV--GGGGRREHPYRRWTDSELQARKEKGLCYRCDEPFSKGHRCK 366

Query: 79  GKELRLLIVDNDVAAKQHASEHVEGKESKVEEVEDSSLEVD-MAELSLNIVVKFSSPGTL 138
            K+L L +V +D          ++  E    E+E+  +EV  + +LSLN VV  ++PGT 
Sbjct: 367 NKKLHLFVVADD----------LDDAEMGEMEIEEGMVEVSPIVDLSLNSVVGLTAPGTF 425

Query: 139 KIKGKIEDRDM 149
           KIKGK+E+R++
Sbjct: 427 KIKGKVEEREV 425

The following BLAST results are available for this feature:

BLAST of Lag0032468 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154744.1	2.5e-17	38.30	uncharacterized protein LOC111021922 [Momordica charantia]	[more]
XP_019056647.1	1.6e-16	42.99	PREDICTED: uncharacterized protein LOC104801738 isoform X1 [Tarenaya hassleriana...	[more]
KAA0062470.1	6.2e-16	43.80	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK27412.1 Ty3/gyp...	[more]
KAA0039532.1	1.4e-15	45.37	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK15285.1 ty3-gyp...	[more]
KAA0037088.1	3.1e-15	39.69	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK06556.1 ty3-gyp...	[more]

BLAST of Lag0032468 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 27..145
None	No IPR available	PANTHER	PTHR34482:SF20	SUBFAMILY NOT NAMED	coord: 27..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0032468.1	Lag0032468.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding