Lag0032467 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0032467
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Transposon TX1 uncharacterized 149 kDa protein
Location	chr11: 32977607 .. 32978319 (+)
RNA-Seq Expression	Lag0032467
Synteny	Lag0032467

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATCAATTATACATTCAAAGCCTCCTTTGACAAAAGGGGTTTTAGTACCTCCTAATTTCCAAGCTGATAAATCATTACCTTCCTCTTCACATACTATAGAATCCAATGAAGAATCAGAAATTAGTGTGAGTAGTGTTGAAACAAAACCTCAAAATTTGAATAATGAAAGTTGCAAATTAGTTGAAGAGGATTCTTTTGTTATTGCTTTTGAATTGATTTTTCAGGATAATGAAGTTTCATCAGATCAGTTGGTTATTTGTGAAGATTTGATTTCACCAACAGTTGATGTACCAAGTAAATTTTCTTCCCTCATTGAAAGGTGTGACATTTAGTTGAAAGAAACCAATCATTTGTTACCTCCAGTAAGTAATATTAAGTAAAGTATTATCAGTTTTAGATTAAAAGGAGTTCCACGAAGATTATATCTTAAAATACCAGAGGCCTAGGGGATCGTTCATAGAGGTTGGCTTTGAAGAAATTTTTACACCATCACTGTCCTGATTTTGTGTTAATTCAGGAAACGAAGATGGTTTCATTTGATCAGCAATTGATGAAATCTATTTGGAGCTCTAGAAAGGTTGGGTGGGTTAATGTGAAATCTTGGGGAAAGTTTGGAGGATTGTTAATTATGTGGGATGAGAATAATCTGAAAATTCTGGAATTTCTCAAAGGTGGTTATACGGTATCAGTAAAAGTATCCTTCACATGA

mRNA sequence

ATGCAATCAATTATACATTCAAAGCCTCCTTTGACAAAAGGGGTTTTAGTACCTCCTAATTTCCAAGCTGATAAATCATTACCTTCCTCTTCACATACTATAGAATCCAATGAAGAATCAGAAATTAGTGATAATGAAGTTTCATCAGATCAGTTGGTTATTTGTGAAGATTTGATTTCACCAACAGTTGATGAAACGAAGATGGTTTCATTTGATCAGCAATTGATGAAATCTATTTGGAGCTCTAGAAAGGTTGGGTGGGTTAATGTGAAATCTTGGGGAAAGTTTGGAGGATTGTTAATTATGTGGGATGAGAATAATCTGAAAATTCTGGAATTTCTCAAAGGTGGTTATACGGTATCAGTAAAAGTATCCTTCACATGA

Coding sequence (CDS)

ATGCAATCAATTATACATTCAAAGCCTCCTTTGACAAAAGGGGTTTTAGTACCTCCTAATTTCCAAGCTGATAAATCATTACCTTCCTCTTCACATACTATAGAATCCAATGAAGAATCAGAAATTAGTGATAATGAAGTTTCATCAGATCAGTTGGTTATTTGTGAAGATTTGATTTCACCAACAGTTGATGAAACGAAGATGGTTTCATTTGATCAGCAATTGATGAAATCTATTTGGAGCTCTAGAAAGGTTGGGTGGGTTAATGTGAAATCTTGGGGAAAGTTTGGAGGATTGTTAATTATGTGGGATGAGAATAATCTGAAAATTCTGGAATTTCTCAAAGGTGGTTATACGGTATCAGTAAAAGTATCCTTCACATGA

Protein sequence

MQSIIHSKPPLTKGVLVPPNFQADKSLPSSSHTIESNEESEISDNEVSSDQLVICEDLISPTVDETKMVSFDQQLMKSIWSSRKVGWVNVKSWGKFGGLLIMWDENNLKILEFLKGGYTVSVKVSFT

Homology

[Close]

BLAST of Lag0032467 vs. NCBI nr
Match: TYJ98683.1 (hypothetical protein E5676_scaffold429G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 2.7e-08
Identity = 32/73 (43.84%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 50  DQLVICEDLISPTVDETKMVSFDQQLMKSIWSSRKVGWVNVKSWGKFGGLLIMWDENNLK 109
           D LVIC           +    D  L+KS+WSS+ +GW  V+S+G+FGG+L MWD + +K
Sbjct: 69  DHLVICY--------RNQGQEIDIALIKSLWSSKDIGWELVESFGRFGGILTMWDMSKIK 128

Query: 110 ILEFLKGGYTVSV 123
           ++E LKGGY++S+
Sbjct: 129 VVETLKGGYSLSI 133

[Close]

BLAST of Lag0032467 vs. NCBI nr
Match: KAA0063088.1 (uncharacterized protein E6C27_scaffold623G00050 [Cucumis melo var. makuwa] >TYK02044.1 uncharacterized protein E5676_scaffold680G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-06
Identity = 26/60 (43.33%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 63  VDETKMVSFDQQLMKSIWSSRKVGWVNVKSWGKFGGLLIMWDENNLKILEFLKGGYTVSV 122
           + E+K   FD   +KS+WSS+  GW   + +G  GG+L +WD + LK++E LKGGY++S+
Sbjct: 238 IQESKKEEFDIVFIKSLWSSKDNGWELFEPFGHSGGILTLWDMSKLKVIETLKGGYSLSI 297

[Close]

BLAST of Lag0032467 vs. NCBI nr
Match: XP_031739979.1 (uncharacterized protein LOC116403332 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 6.2e-05
Identity = 20/64 (31.25%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 63  VDETKMVSFDQQLMKSIWSSRKVGWVNVKSWGKFGGLLIMWDENNLKILEFLKGGYTVSV 122
           + ++K+ + ++ L+KS+WSS  VGW  ++++G  GG+LI+W E+++ +++ ++G +++S+
Sbjct: 27  LQKSKVSTVNRHLVKSVWSSWFVGWATLEAYGSSGGILILWKEDSITVVDSIQGQFSISI 86

Query: 123 KVSF 127
              F
Sbjct: 87  HWKF 90

[Close]

BLAST of Lag0032467 vs. NCBI nr
Match: RVW57183.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 58.2 bits (139), Expect = 6.2e-05
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 56  EDLISPTVDETKMVSFDQQLMKSIWSSRKVGWVNVKSWGKFGGLLIMWDENNLKILEFLK 115
           EDL      ETK   +D + + S+W    V WV + + G  GG++IMWD NNLK  E + 
Sbjct: 165 EDLKLEYKRETKREIWDGRFVSSVWKGISVEWVALPACGASGGIVIMWDSNNLKCTEKVL 224

Query: 116 GGYTVSVKVS 126
           G ++V+VK++
Sbjct: 225 GSFSVTVKLN 234

[Close]

BLAST of Lag0032467 vs. NCBI nr
Match: RVW27472.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 57.8 bits (138), Expect = 8.1e-05
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 63  VDETKMVSFDQQLMKSIWSSRKVGWVNVKSWGKFGGLLIMWDENNLKILEFLKGGYTVSV 122
           + ETK  + D++ + S+W++R   WV + + G  GG+LI+WD  NL+  E + G ++VSV
Sbjct: 306 IQETKKENCDRRFVGSVWTARNKDWVALPASGASGGILIIWDSKNLRREEVVTGSFSVSV 365

Query: 123 KVS 126
           K S
Sbjct: 366 KFS 368

The following BLAST results are available for this feature:

BLAST of Lag0032467 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98683.1	2.7e-08	43.84	hypothetical protein E5676_scaffold429G00120 [Cucumis melo var. makuwa]	[more]
KAA0063088.1	1.9e-06	43.33	uncharacterized protein E6C27_scaffold623G00050 [Cucumis melo var. makuwa] >TYK0...	[more]
XP_031739979.1	6.2e-05	31.25	uncharacterized protein LOC116403332 [Cucumis sativus]	[more]
RVW57183.1	6.2e-05	40.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW27472.1	8.1e-05	39.68	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]

BLAST of Lag0032467 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0032467.1	Lag0032467.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0140097	catalytic activity, acting on DNA
molecular_function	GO:0004518	nuclease activity