Lag0032462 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0032462
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	chr11: 32923513 .. 32925600 (-)
RNA-Seq Expression	Lag0032462
Synteny	Lag0032462

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAGATCTCGTTCTTTTGACTGGAAAGGGAATATGGATTGGCCAGAGGTACTCTGCAGTGAAATATTATTATTTAGTTGAAACTTGAAGACTGTACTGGCTGTGCAGATTGAGGAACATTCCTTACTCGGCTGAAATAGAATGTTTATTTTTTCTCTGAAGTTTTCTTTCGGATGTATAGAGTGTGTTCGTTTGTGTAGTCTCTGCAAGGTTCGAGTTCAGTTTGTTTGATTCTCCATCATGCCTTTGAACTCGCCATTGAAGATCCCCCTCTCCTTTTTGGAGTTCATGTAGACAATTTTATAGTTAAGGTTCTCGTGTAACTTATTTATTTATTTGTCTATTATCATGTATAATGCAAGTGAAATTTATTCATGTGCATTTCCTTTTGTAATTAATTATGATTAATAAATTATGTATAATGCAAGTGAGATTTTTTTTTTTTTTTCTTTGTTCGTGTCCCTAAACACACCACATTTGTTGAATGGACTATTCTAGTCTGATAAAATGTCTTTTATCCTTAGATATTGTTGGACTATTTATCTATTTTCCTTTGATATAGTTTGTTATAGGTGTAGCCTATCTCTATGCTCCACTTGTCCTTGTATTTCTCTTTATATTGGTACATTGTTCATTGTGTAAGAATACAGACAATTATTGAATACAATTCTCAATTATTCTCTCCTATTATTCTGCAACCTTTGATGGTATAGAGTTGGGCTCACTCTGTTCTTTCCTAAAATGAATATTGAAGAATGATCTTCATCTTCTACCTCATCTTCTCAAGAAAACACTCCAGTTGTTTCGCCAACCACACCAATCACAACTTCGGTGGTAACCCCTATTCAAAATCTAAACCAAAATCCTCCCAATCCCACTCCCCCACGAATTCGACCTCAAGTGAATCAAAATCGGAAAAGGAATCCAACCCTTATTCCTCCCCAAACTCTTAATATTGCTCCCTATCATCCTCAGCAACCTTTTCCTTAGTTGTTTTATCTCCAACAACAAGCATTTTATCTGAGACCCCTGTATCCTGCCCCTCCCTCAACCTCAAAATTTTCCTCCGTATCCAAACTTCTTTACCCCAAAAGCCTCTTGTCGTGAAACTCACTAATAACAATTTCTTGCTCTAGAAGAATCAACTTCTCAATGTCGTGCTAGCAAATGGACTATCGGGTTTTTTCGATGGCTCAATTCCAATTCTACTAAAATTTCTGGATCTGAACAACACTCAACTAAATCCTGATTATCTAGGATGGGAGAGGTACAATTGTTTTATTATGTATTGGATTTATTCCTCTTTGTTTGAAGAAAAGATAGGTGAGATAGTTAGCCTTGAATCAACTTCTGAAATCTGGTCTTCTTTAATTCGTTCATATGATTCGAATACAACTATTCATATTATGGCTTTGAAAGCTCAACTTCAGAAAATTAGAAAGGATGGTTTGTTCGTGAGTCAATATTTAGCCAAGATAAAAGAAATAGTTGATAGGTTTGTTGCGATTGGGGAATCGATATCATATCGAGATCATTTAGCTCGTATTTTTTATGGATTAGGTAGTGAATATAATGCTTTTGTTACCACGATTCAAAATAGATCAGATAATCTCACTTCTAAAAGTTACGTAGCCTCTTATTAGCTTATGAAGCACGTTTGGAGAAGCAATCTACAATTGACCATCTAAATTTAGCCCAAGCAAATTTTAGTAGCCTCAACATTCATAATCTAATCGTCGTTCTTCTACCAGGTCTCGACCATAATTTAACCATTTCTCAAAATCCTCCTCTTCTCCATCCCAACTGCACCAACTAAATTTCTCTCACAGTATCCTTGGCAAGCCCCAATCCCCTGTTCAGTGGTCTTCTAAACCAACAAATTCCAAGTTGCAATGCCAAATATGTGGCAAGTTTGACCACACAACCCTGATCTCTCATCATCACACTAACCTTGCATACCAAACCCCTCCTCAACTGCAAGCTCTTGTTCATACTTCAACCAATCCTGTCTCCAATATGTCTCAAGCTTTTTCAGATACCTCATCAACTGTCCAAGTTGAATTTTCTCATCCTGATGAATCGTGA

mRNA sequence

ATGGTTAGATCTCGTTCTTTTGACTGGAAAGGGAATATGGATTGGCCAGAGTCTCTGCAAGGTTCGAGTTCAGTTTGTTTGATTCTCCATCATGCCTTTGAACTCGCCATTGAAGATCCCCCTCTCCTTTTTGGAGTTCATGTAGACAATTTTATAGTTAAGAAGAATCAACTTCTCAATGTCGTGCTAGCAAATGGACTATCGGGTTTTTTCGATGGCTCAATTCCAATTCTACTAAAATTTCTGGATCTGAACAACACTCAACTAAATCCTGATTATCTAGGATGGGAGAGTATCCTTGGCAAGCCCCAATCCCCTGTTCAGTGGTCTTCTAAACCAACAAATTCCAAGTTGCAATGCCAAATATGTGGCAAGTTTGACCACACAACCCTGATCTCTCATCATCACACTAACCTTGCATACCAAACCCCTCCTCAACTGCAAGCTCTTGTTCATACTTCAACCAATCCTGTCTCCAATATGTCTCAAGCTTTTTCAGATACCTCATCAACTGTCCAAGTTGAATTTTCTCATCCTGATGAATCGTGA

Coding sequence (CDS)

ATGGTTAGATCTCGTTCTTTTGACTGGAAAGGGAATATGGATTGGCCAGAGTCTCTGCAAGGTTCGAGTTCAGTTTGTTTGATTCTCCATCATGCCTTTGAACTCGCCATTGAAGATCCCCCTCTCCTTTTTGGAGTTCATGTAGACAATTTTATAGTTAAGAAGAATCAACTTCTCAATGTCGTGCTAGCAAATGGACTATCGGGTTTTTTCGATGGCTCAATTCCAATTCTACTAAAATTTCTGGATCTGAACAACACTCAACTAAATCCTGATTATCTAGGATGGGAGAGTATCCTTGGCAAGCCCCAATCCCCTGTTCAGTGGTCTTCTAAACCAACAAATTCCAAGTTGCAATGCCAAATATGTGGCAAGTTTGACCACACAACCCTGATCTCTCATCATCACACTAACCTTGCATACCAAACCCCTCCTCAACTGCAAGCTCTTGTTCATACTTCAACCAATCCTGTCTCCAATATGTCTCAAGCTTTTTCAGATACCTCATCAACTGTCCAAGTTGAATTTTCTCATCCTGATGAATCGTGA

Protein sequence

MVRSRSFDWKGNMDWPESLQGSSSVCLILHHAFELAIEDPPLLFGVHVDNFIVKKNQLLNVVLANGLSGFFDGSIPILLKFLDLNNTQLNPDYLGWESILGKPQSPVQWSSKPTNSKLQCQICGKFDHTTLISHHHTNLAYQTPPQLQALVHTSTNPVSNMSQAFSDTSSTVQVEFSHPDES

Homology

[Close]

BLAST of Lag0032462 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 70.1 bits (170), Expect = 2.2e-08
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 97  ESILGKPQSPVQWSSKPTNSKLQCQICGKFDHTTLISHHHTNLAYQTPPQLQALVHTSTN 156
           +SILGKPQS  +W  KP++SK+QCQICGK  H+  + +H TN+AY      QAL H    
Sbjct: 270 QSILGKPQSVHKWPPKPSSSKIQCQICGKLGHSAAVCYHRTNIAYHNASP-QALYH-HVQ 329

Query: 157 PVSNMSQAFSDTSSTVQVEFSHPDES 183
           P        S T  +   EF HPDES
Sbjct: 330 P--------SPTHPSSGHEFQHPDES 345

[Close]

BLAST of Lag0032462 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-04
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 41 PLLFGVHVDNFIVKKNQLLNVVLANGLSGFFDGSIPILLKFLDLNNTQLNPDYLGWE 98
          PL   ++ +NF++ KNQLLN V+ANGL G+ DG+I    +FLD +  Q NP Y  WE
Sbjct: 29 PLNVKLNDNNFLLWKNQLLNAVIANGLRGYLDGTIMPPPQFLDHHQLQPNPAYYAWE 85

HSP 2 Score: 68.2 bits (165), Expect = 8.5e-08
Identity = 59/204 (28.92%), Postives = 72/204 (35.29%), Query Frame = 0


Query: 41  PLLFGVHVDNFIVKKNQLLNVVLANGLSGFFDGSIPILLKFLDLNNTQLNPDYLGW---- 100
           PL   +  DN+++ KNQLLNVV+ NGL G  D +     KFLDL    +NP+Y  W    
Sbjct: 211 PLTIKLDRDNYLIWKNQLLNVVIVNGLEGXLDNTRLYPPKFLDLQQLIINPEYSLWXRYN 270

Query: 101 ------------------------------------------------------------ 149
                                                                       
Sbjct: 271 RLIMSWFYAFLFENVMTQIMGYNTASEIWLALGQIYASASMARLXKLCTQLQSLKKKKHF 330

[Close]

BLAST of Lag0032462 vs. NCBI nr
Match: EXB93772.1 (hypothetical protein L484_010911 [Morus notabilis])

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-04
Identity = 30/81 (37.04%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 39  DPPLLFGVHVDNFIVKKNQLLNVVLANGLSGFFDGSIPILLKFLDLNNTQLNPDYLGWES 98
           +P L   +  DNF++ KNQ+LN+++A+G   F DGS P   +FL     ++NPDY  W+ 
Sbjct: 41  NPQLSIKLDDDNFLLWKNQMLNIIIAHGFDDFIDGSRPCPPRFLANQPGEVNPDYTAWQR 100

Query: 99  ILGKPQSPVQWSSKPTNSKLQ 120
           +    QSP +      N +LQ
Sbjct: 101 L----QSPTK-EDNNRNPRLQ 116

[Close]

BLAST of Lag0032462 vs. NCBI nr
Match: RVW56403.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 57.0 bits (136), Expect = 2.0e-04
Identity = 27/57 (47.37%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 41 PLLFGVHVDNFIVKKNQLLNVVLANGLSGFFDGSIPILLKFLDLNNTQLNPDYLGWE 98
          PL   +   N  + KNQLLNV++ANGL  F +G  PI  KFLD    Q+NP ++ WE
Sbjct: 39 PLTIKLDETNLFLWKNQLLNVIIANGLEDFIEGETPIPAKFLDDAQLQVNPLFIQWE 95

[Close]

BLAST of Lag0032462 vs. NCBI nr
Match: RVW73808.1 (hypothetical protein CK203_058306 [Vitis vinifera])

HSP 1 Score: 56.6 bits (135), Expect = 2.6e-04
Identity = 22/48 (45.83%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 49 DNFIVKKNQLLNVVLANGLSGFFDGSIPILLKFLDLNNTQLNPDYLGW 97
          +N++++KN +LNV++ANGL  F DGS P L +FLD     +NP++  W
Sbjct: 6  NNYLIRKNYVLNVIIANGLEDFIDGSRPCLTRFLDAQMQTVNPNFTTW 53

The following BLAST results are available for this feature:

BLAST of Lag0032462 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155181.1	2.2e-08	46.51	uncharacterized protein LOC111022315 [Momordica charantia]	[more]
XP_022155181.1	1.5e-04	49.12	uncharacterized protein LOC111022315 [Momordica charantia]	[more]
EXB93772.1	1.2e-04	37.04	hypothetical protein L484_010911 [Morus notabilis]	[more]
RVW56403.1	2.0e-04	47.37	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
RVW73808.1	2.6e-04	45.83	hypothetical protein CK203_058306 [Vitis vinifera]	[more]

BLAST of Lag0032462 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..182
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0032462.1	Lag0032462.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
molecular_function	GO:0005488	binding
molecular_function	GO:0016740	transferase activity