Lag0032438 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032438
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr11: 32530537 .. 32531204 (-)
RNA-Seq ExpressionLag0032438
SyntenyLag0032438
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTTGCGCCAGAATGGGTGGAGTTGGTCTATCGATGCATATCCTCAGTGAGGTTTTCCTTCAACGTGAATGGGATCAGATATGGGACTTTGAATCCATCTCAGGGCCTCAGGCAAGGGGACTCTCTTTCCCCTACCTGTTTTTGCTATGTGCGGAGGGATTGTCGAGTCTGCTTCGTGGGGCATAAAGTGTAGGTGCTATTTCGGGTCTAAGACTATCCCGACAGGGTCCGCCTATTTCACATCTGTTCTTTGCAGATGATAGCCTGTTGTTTTTTAGGCCAAAGGTGAGGGAAGCTCGTATTATTCAGGATATACTTCGTTGCTATGAACGAGCCTCAGGTTAGACGGTGAACTGTGATAAATCTATTATCTCATTCAGTCCTAATACAGAGGAGGGAGCGCAGGAGGAGGTGAGTCAAGTTCTTCGTGTGCAACAGACACCTTGTCATGCTCAATACGTGGGGCTTTCGTACTTCGTACCTCGTAGTAGGAAGAGCACGTTGAAATTTATAACGGACCGAGTTTGGCAGCAGATCCAGAGGTGGAAGGGGACGTTGTTTTCAGTGGGAGGAAGGGAGGTCCTACTGAAGTCTGTGGTGCAGACCATTCCATGTTATGCTATGAACTGCTTCCAGCTCCCGAAGAAACTGATTGCTGAATAA

mRNA sequence

ATGAGTTTTGCGCCAGAATGGGTGGAGTTGGTCTATCGATGCATATCCTCAGTGAGGTTTTCCTTCAACGTGAATGGGATCAGATATGGGACTTTGAATCCATCTCAGGGCCTCAGGCAAGGGGACTCTCTTTCCCCTACCTGTTTTTGCTATGTGCGGAGGGATTGTCGAGTCTGCTTCGTGGGGCATAAAGTTCCTAATACAGAGGAGGGAGCGCAGGAGGAGGTGAGTCAAGTTCTTCGTGTGCAACAGACACCTTGTCATGCTCAATACGTGGGGCTTTCGTACTTCGTACCTCGTAGTAGGAAGAGCACGTTGAAATTTATAACGGACCGAGTTTGGCAGCAGATCCAGAGGTGGAAGGGGACGTTGTTTTCAGTGGGAGGAAGGGAGGTCCTACTGAAGTCTGTGGTGCAGACCATTCCATGTTATGCTATGAACTGCTTCCAGCTCCCGAAGAAACTGATTGCTGAATAA

Coding sequence (CDS)

ATGAGTTTTGCGCCAGAATGGGTGGAGTTGGTCTATCGATGCATATCCTCAGTGAGGTTTTCCTTCAACGTGAATGGGATCAGATATGGGACTTTGAATCCATCTCAGGGCCTCAGGCAAGGGGACTCTCTTTCCCCTACCTGTTTTTGCTATGTGCGGAGGGATTGTCGAGTCTGCTTCGTGGGGCATAAAGTTCCTAATACAGAGGAGGGAGCGCAGGAGGAGGTGAGTCAAGTTCTTCGTGTGCAACAGACACCTTGTCATGCTCAATACGTGGGGCTTTCGTACTTCGTACCTCGTAGTAGGAAGAGCACGTTGAAATTTATAACGGACCGAGTTTGGCAGCAGATCCAGAGGTGGAAGGGGACGTTGTTTTCAGTGGGAGGAAGGGAGGTCCTACTGAAGTCTGTGGTGCAGACCATTCCATGTTATGCTATGAACTGCTTCCAGCTCCCGAAGAAACTGATTGCTGAATAA

Protein sequence

MSFAPEWVELVYRCISSVRFSFNVNGIRYGTLNPSQGLRQGDSLSPTCFCYVRRDCRVCFVGHKVPNTEEGAQEEVSQVLRVQQTPCHAQYVGLSYFVPRSRKSTLKFITDRVWQQIQRWKGTLFSVGGREVLLKSVVQTIPCYAMNCFQLPKKLIAE
Homology
BLAST of Lag0032438 vs. NCBI nr
Match: XP_030479476.1 (uncharacterized protein LOC115696730 [Cannabis sativa])

HSP 1 Score: 123.2 bits (308), Expect = 1.9e-24
Identity = 65/176 (36.93%), Postives = 94/176 (53.41%), Query Frame = 0

Query: 1   MSFAPEWVELVYRCISSVRFSFNVNGIRYGTLNPSQGLRQGDSL----SPTCFCYVRRDC 60
           M F  +W+ L+  C++S RFSF +NG     + P++GLRQ   L        FC    + 
Sbjct: 116 MGFHNKWISLIMACLNSTRFSFMLNGEEVEYVQPTRGLRQVSHLLFADDSLLFCEATNNS 175

Query: 61  -----RVCFVGHKV---------------PNTEEGAQEEVSQVLRVQQTPCHAQYVGLSY 120
                RV  + HK                PNT + A++   Q+L +  + CH  Y+GL  
Sbjct: 176 ARAIQRVLDIYHKASGQLLNTSKSVMSFSPNTSQAAKDFFHQILGMPISECHEWYLGLPA 235

Query: 121 FVPRSRKSTLKFITDRVWQQIQRWKGTLFSVGGREVLLKSVVQTIPCYAMNCFQLP 153
           F  R +K     + +R+WQ++  W   LFSVGG+EVLLK+VVQ+IP YAM+CF+LP
Sbjct: 236 FSERDKKEMFSDVKERIWQKLHTWNEKLFSVGGKEVLLKAVVQSIPTYAMSCFRLP 291

BLAST of Lag0032438 vs. NCBI nr
Match: KAA3462318.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 120.9 bits (302), Expect = 9.6e-24
Identity = 63/155 (40.65%), Postives = 88/155 (56.77%), Query Frame = 0

Query: 1   MSFAPEWVELVYRCISSVRFSFNVNGIRYGTLNPSQGLRQGDSLSPTCFCYVRRDCRVCF 60
           + FA EWV L+ +CI+SV ++ N+NG R     P++GLRQGD LSP  F    +D     
Sbjct: 423 IGFAHEWVGLIMKCITSVSYAVNINGYRGRVFQPTKGLRQGDPLSPFLFLICSKD----- 482

Query: 61  VGHKVPNTEEGAQEEVSQVLRVQQTPCHAQYVGLSYFVPRSRKSTLKFITDRVWQQIQRW 120
                      A+E VS +L V+ +    +Y+GL   V R +K   K I D++  +I  W
Sbjct: 483 -----------AKETVSSLLGVRSSSNPEKYLGLPNVVGRRKKEAFKSILDKISLRIDSW 542

Query: 121 KGTLFSVGGREVLLKSVVQTIPCYAMNCFQLPKKL 156
              L S GG+E+ +KSV+Q IP YAM+CF LPK L
Sbjct: 543 STRLLSQGGKEIFIKSVLQAIPTYAMSCFLLPKTL 561

BLAST of Lag0032438 vs. NCBI nr
Match: XP_030936142.1 (uncharacterized protein LOC115961277 [Quercus lobata])

HSP 1 Score: 119.8 bits (299), Expect = 2.1e-23
Identity = 64/196 (32.65%), Postives = 100/196 (51.02%), Query Frame = 0

Query: 1   MSFAPEWVELVYRCISSVRFSFNVNGIRYGTLNPSQGLRQGDSLSPTCFCYVRRDCRVCF 60
           + F   W+ LV +CI+SV +S  +NG+ +G + P++GLRQGD LSP  F    +   + F
Sbjct: 456 LGFNESWIGLVMKCITSVTYSVIINGLAHGCIVPTRGLRQGDPLSPYLFLGSPKISHLFF 515

Query: 61  V----------------------------GHKV----------PNTEEGAQEEVSQVLRV 120
           V                            G K+          PN+ +  ++E+  +L  
Sbjct: 516 VDDSLLFCKANGAECNKLKEILRTYESASGQKINTDKSSIFFSPNSSQECKDEILGILGP 575

Query: 121 QQTPCHAQYVGLSYFVPRSRKSTLKFITDRVWQQIQRWKGTLFSVGGREVLLKSVVQTIP 159
                H +Y+GLS+ + RS+K     I ++V Q++  WK  L S+GG+E+L+K+V Q IP
Sbjct: 576 MNDTSHTKYLGLSFIIGRSKKLIFTEIKEKVCQKLASWKSKLPSMGGKEILIKAVAQAIP 635

BLAST of Lag0032438 vs. NCBI nr
Match: XP_030501162.1 (uncharacterized protein LOC115716493 [Cannabis sativa])

HSP 1 Score: 119.0 bits (297), Expect = 3.7e-23
Identity = 70/216 (32.41%), Postives = 97/216 (44.91%), Query Frame = 0

Query: 1   MSFAPEWVELVYRCISSVRFSFNVNGIRYGTLNPSQGLRQGDSLSP-------------- 60
           M F  +W+ L+  C+S+  FSF +NG   G + P++GLRQGD LSP              
Sbjct: 221 MGFHQKWISLIMSCLSTTSFSFMLNGEEVGNVQPTRGLRQGDPLSPYLFLICSEGLSRLL 280

Query: 61  ------------------------------TCFCYVRRDC-----RVCFVGHKV------ 120
                                           FC    +      RV  + HK       
Sbjct: 281 QHEEEIQNLRGLRLTRHAPSISHLLFADDSLLFCEATNNSAFAIHRVLDIYHKASGQLLN 340

Query: 121 ---------PNTEEGAQEEVSQVLRVQQTPCHAQYVGLSYFVPRSRKSTLKFITDRVWQQ 153
                    PNT + A+    Q L +  + CH +Y+GL  F  R +K     I +R+WQ+
Sbjct: 341 TSKSVMSFSPNTTQAAKTFFHQTLGMPISECHERYLGLPAFSERDKKEMFSDIKERIWQR 400

BLAST of Lag0032438 vs. NCBI nr
Match: XP_030497433.1 (uncharacterized protein LOC115713087 [Cannabis sativa])

HSP 1 Score: 118.6 bits (296), Expect = 4.8e-23
Identity = 63/193 (32.64%), Postives = 99/193 (51.30%), Query Frame = 0

Query: 7   WVELVYRCISSVRFSFNVNGIRYGTLNPSQGLRQGDSLSPTCF--------CYVR----- 66
           W+E + RC++SV FS  +NG R+G  +PS+GLRQGDSLSP  F        C ++     
Sbjct: 11  WIEKIMRCVTSVSFSVLINGERFGNFHPSRGLRQGDSLSPYLFLICSEGLSCLIQEAERA 70

Query: 67  -----------RDCRVC---------FVGHKV----------PNTEEGAQEEVSQVLRVQ 126
                      ++C              G K+           +  +   + ++  L V 
Sbjct: 71  GKITGILFGKEKECATMTQIFQRYTRLSGQKINLEKSEVSMSSSVSKPLGQHLANALGVW 130

Query: 127 QTPCHAQYVGLSYFVPRSRKSTLKFITDRVWQQIQRWKGTLFSVGGREVLLKSVVQTIPC 157
               HA Y+GL  F+ R ++   + I D+ W +++ WK ++FS  G+E+L+K+V+Q IP 
Sbjct: 131 LVTNHAIYLGLPSFIGRRKREVFEVIKDKAWNKLKSWKASMFSQAGKEILIKAVIQAIPS 190

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030479476.11.9e-2436.93uncharacterized protein LOC115696730 [Cannabis sativa][more]
KAA3462318.19.6e-2440.65reverse transcriptase [Gossypium australe][more]
XP_030936142.12.1e-2332.65uncharacterized protein LOC115961277 [Quercus lobata][more]
XP_030501162.13.7e-2332.41uncharacterized protein LOC115716493 [Cannabis sativa][more]
XP_030497433.14.8e-2332.64uncharacterized protein LOC115713087 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33116:SF45SUBFAMILY NOT NAMEDcoord: 1..50
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 1..50
coord: 66..157
NoneNo IPR availablePANTHERPTHR33116:SF45SUBFAMILY NOT NAMEDcoord: 66..157

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032438.1Lag0032438.1mRNA