Lag0032432 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0032432
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotran_gag_3 domain-containing protein
Location	chr11: 32474558 .. 32474872 (+)
RNA-Seq Expression	Lag0032432
Synteny	Lag0032432

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGCGCCGATTCTACTGGAGTATCTGCCTTCTCCACCGGATCAGCCAATTTCAGTACACCTCCGCTCAATCAGTTGCTGAATCAAATCACAACTATTAAGTTAGATCGTGGAAATTTTCTCCTATGGAAGAATTTGGCATTGCCCATTCTTCGGAGCTATAAATTAGAGAGCCATCTATCTCGGTCTGAGCCGTGCCCTCCTGAGTTCGTCGTTTCTACCACAGTTACCAATCCGATATCAGTAGAGCGCAACAAGCGCAGAGACTGTTGCAAGTGCAGCATCCGGTTCCACACCAGCTGCTATAGTTAA

mRNA sequence

ATGGCCAGCGCCGATTCTACTGGAGTATCTGCCTTCTCCACCGGATCAGCCAATTTCAGTACACCTCCGCTCAATCAGTTGCTGAATCAAATCACAACTATTAAGTTAGATCGTGGAAATTTTCTCCTATGGAAGAATTTGGCATTGCCCATTCTTCGGAGCTATAAATTAGAGAGCCATCTATCTCGGTCTGAGCCGTGCCCTCCTGAGTTCGTCGTTTCTACCACAGTTACCAATCCGATATCAGTAGAGCGCAACAAGCGCAGAGACTGTTGCAAGTGCAGCATCCGGTTCCACACCAGCTGCTATAGTTAA

Coding sequence (CDS)

ATGGCCAGCGCCGATTCTACTGGAGTATCTGCCTTCTCCACCGGATCAGCCAATTTCAGTACACCTCCGCTCAATCAGTTGCTGAATCAAATCACAACTATTAAGTTAGATCGTGGAAATTTTCTCCTATGGAAGAATTTGGCATTGCCCATTCTTCGGAGCTATAAATTAGAGAGCCATCTATCTCGGTCTGAGCCGTGCCCTCCTGAGTTCGTCGTTTCTACCACAGTTACCAATCCGATATCAGTAGAGCGCAACAAGCGCAGAGACTGTTGCAAGTGCAGCATCCGGTTCCACACCAGCTGCTATAGTTAA

Protein sequence

MASADSTGVSAFSTGSANFSTPPLNQLLNQITTIKLDRGNFLLWKNLALPILRSYKLESHLSRSEPCPPEFVVSTTVTNPISVERNKRRDCCKCSIRFHTSCYS

Homology

[Close]

BLAST of Lag0032432 vs. NCBI nr
Match: XP_031745012.1 (uncharacterized protein LOC116405217 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 1.7e-16
Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 6  STGVSAFSTGSANFSTPPLNQLLNQITTIKLDRGNFLLWKNLALPILRSYKLESHLSRSE 65
          + GVS   + + NFS PPLNQ+LNQ+ ++KLDRGN+LLW+ LALPIL+SYKL+ HL+   
Sbjct: 2  TNGVSLIGSSTTNFSNPPLNQILNQLASVKLDRGNYLLWQTLALPILKSYKLQGHLTEEN 61

Query: 66 PCPPEFVVSTT 77
           CPP+F+++ T
Sbjct: 62 QCPPKFIINPT 72

[Close]

BLAST of Lag0032432 vs. NCBI nr
Match: XP_016902203.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 3.7e-16
Identity = 48/84 (57.14%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 1  MASADSTGVSAFSTGSANFSTPPLNQLLNQITTIKLDRGNFLLWKNLALPILRSYKLESH 60
          MA+A  T     S  SA FS PPLNQ+LNQ+TT+KLDR N+LLWK LALPIL+ YKLE H
Sbjct: 1  MANAQPTAAPP-SLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGH 60

Query: 61 LSRSEPCPPEFVVSTTVTNPISVE 85
          L+   PCP  FV+S + +N    E
Sbjct: 61 LTAETPCPSHFVLSASSSNTTVTE 83

[Close]

BLAST of Lag0032432 vs. NCBI nr
Match: XP_016902205.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 3.7e-16
Identity = 48/84 (57.14%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 1  MASADSTGVSAFSTGSANFSTPPLNQLLNQITTIKLDRGNFLLWKNLALPILRSYKLESH 60
          MA+A  T     S  SA FS PPLNQ+LNQ+TT+KLDR N+LLWK LALPIL+ YKLE H
Sbjct: 1  MANAQPTAAPP-SLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGH 60

Query: 61 LSRSEPCPPEFVVSTTVTNPISVE 85
          L+   PCP  FV+S + +N    E
Sbjct: 61 LTAETPCPSHFVLSASSSNTTVTE 83

[Close]

BLAST of Lag0032432 vs. NCBI nr
Match: XP_016902197.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 3.7e-16
Identity = 48/84 (57.14%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 1  MASADSTGVSAFSTGSANFSTPPLNQLLNQITTIKLDRGNFLLWKNLALPILRSYKLESH 60
          MA+A  T     S  SA FS PPLNQ+LNQ+TT+KLDR N+LLWK LALPIL+ YKLE H
Sbjct: 1  MANAQPTAAPP-SLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGH 60

Query: 61 LSRSEPCPPEFVVSTTVTNPISVE 85
          L+   PCP  FV+S + +N    E
Sbjct: 61 LTAETPCPSHFVLSASSSNTTVTE 83

[Close]

BLAST of Lag0032432 vs. NCBI nr
Match: XP_016902204.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X4 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 3.7e-16
Identity = 48/84 (57.14%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 1  MASADSTGVSAFSTGSANFSTPPLNQLLNQITTIKLDRGNFLLWKNLALPILRSYKLESH 60
          MA+A  T     S  SA FS PPLNQ+LNQ+TT+KLDR N+LLWK LALPIL+ YKLE H
Sbjct: 1  MANAQPTAAPP-SLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGH 60

Query: 61 LSRSEPCPPEFVVSTTVTNPISVE 85
          L+   PCP  FV+S + +N    E
Sbjct: 61 LTAETPCPSHFVLSASSSNTTVTE 83

The following BLAST results are available for this feature:

BLAST of Lag0032432 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031745012.1	1.7e-16	56.34	uncharacterized protein LOC116405217 [Cucumis sativus]	[more]
XP_016902203.1	3.7e-16	57.14	PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo]	[more]
XP_016902205.1	3.7e-16	57.14	PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo]	[more]
XP_016902197.1	3.7e-16	57.14	PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo]	[more]
XP_016902204.1	3.7e-16	57.14	PREDICTED: uncharacterized protein LOC107991581 isoform X4 [Cucumis melo]	[more]

BLAST of Lag0032432 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0032432.1	Lag0032432.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity