Lag0032407 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0032407
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr11: 32054859 .. 32059575 (+)
RNA-Seq Expression	Lag0032407
Synteny	Lag0032407

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGCTATCAAGAGCAACTGGTCATACGCCCGCAGAGCAACCCCCAAAGGGCAAAGTACCTCAACACACGACCCAAAGCCTATGTGTGTGTCGAAGTGGGTCCCAATGACCTCATATATCATAACTACACTACGGAAACACATTCACGTAAGTGTATCGGAAAATCATTGTGGGTACATCATCTAGTGGTTTCAAAAACAATTGTATCTCGTAAACTAAGTTCACAAACCACGCAAAAAGCCATAACATTTCAAATCAAGTTCACATAACTGAAAGTCATAACCCAATGATCATTTTCGTAATTGATTTTGCCATATACAAGGTTTGGCTTATATAGATAAAAAAATCCATGAATTCAGCTGAAATCGTGATTCAAACATCGTGAAGTCACTTTAAAAACTCCAAATATTTGGATTTACCTCATATAACTTGAACCTTTGCCATTAGGCTAAAATCAAAAGATTTGCATAAACTCGTCTTTCATAAACTCATAATAACGGAGTAATTTGAGACAGTTAAGGTCATACATAAATAATAAAAAAAAAAATCCTTTATGATCCCATGGTACTAATTTACAATTTCATTTGAACAACATAACCCATTTTTTACAATTTCAAATTCGTTTAACAAATAGTAAATCAATTCGTTGAATAAGCATACATTTCTTGAACCTCCATAATTCTCAATTATCCAAATGTTTCATAGAATAATGGGAAAAATACACTTTTGGTCCCTGAGGTTTGGGTTAAGTGACAGTTTAGTCCCTGAGTTTTCAAACTCAACAAAAATACCCCTGAGGTTTAAGATAAGTAGCACTTTGGTCCCTGCCGCCTATTTTTCTGTTAAATACTAACGATTGCTGACGTGGAACTATTATTTTAATTAAATAAATTTATTTTTAATTTTTTTAAATAAAAACATATAAAAATAATAAAATATTATTATTTTATTTAAATTATTTCCCTCTCTCTTCCTTTCTTTTACTTCTTCTTTCTCCCTCCTTATCTATTTCTTCTTCAGCTCCAATGGCCGGCCGCCACCGACCGTCGCCGGCTGCCGGCGAGCTGTGGTGGCCGGCCGGAAATTTCTTTTTTTTTTTTCTTTCTTTCTTGCTCCCCTTTTCTTCTCTCCTTTCTTCACTTTCCCTCAACTTTTTTTTTAATAAAAAGAAGCGCCGGCGACAGGAGGAGGGAGGGCCCCTCCTTCCTCTCGGTTTCAGATCTGAAACCGAGAGGGCCCTCCTCCCGTTTCGGGTTTGTTTTGTTTTGACAGGAAGTGTCGCCGTTGACGTCCGGGAGGCTTTCACACAGTAGTGGACCGTTGAACGGTGGGTCTTTGACTGAAACAGACAGCCCGCCGGTGTCGTCGTCCGAAGAATTCGACGACCTCATTAAGGTACCAAACAAATCTCTCTTGAATTTCAAATTTAGGAGAAAATTACTATGTTTTCTCTGTCTTCCTCTGTTTCTAGCAGCCTTCTGTTTCACACTCTGCTCTACAGTGTGTTCTTAGGCAAGTCGTCTGCATCCATGCTTTGCTGCAGTTTTTTTTCTTTTTGTAATTTGTATTTTAAATTTTCAAGAAAACACTTTAAAATAATGGGTCCTTTTCGAAATTTGTAATTTTTTAAAAATAAAATTATGGTGTGAACTTCCATAAACATGGTTATTTGAAAATTTGGTGTTTAAAAATATTTCTAACATATATATATATATATAAAAGAGATCTTTGGTAGTATTTGTAAACGAAGTATAATTTGTTTATAATTATTCCTCAACTAGAAAGGTAAAGTTACCTGCGACATGGTTAATAAAAGTAGTTTGGCTGAGGCTCTTGAGCAGCGGTAAACAAAAGAGTAACTTCATAGTTTTACATTTACTGCATCTGTATTTCCCCTGTTTCTTTCCTTCTTGGAAGCCGGCAATTCCTGGCTCCCTTGCTTCGCTTGCTGTGACTTCCTTTTATTAATTATTACGTAAATAATGGCTTCAGTTTCACAGTGAACAGTACATCACTTGTCATTTCACGCCGGCAACGTCCTCCCTCTTTCCGTCGCCGGCGTCGGAGAGGGAGGCCCTTCTTTTTATTAAAAAAAAAAAGTTAACGGAAAGAGAAGAAAGGAGAGAAGAAAATGGGAGAAAGAAAGAAAAAAAAATTCCGGCTGGCCGCCGCCGCCGTTCGCCGGCAGCCGGCGGGGGTCGGCGACCGGAGCTGAAGAAGAAGGAGATAAGGAGGGAGAAAGAAGTTGGGGAGAAAGAAGTTGGGAGTAAAAGAAAGGGAGAGAGAGAAAGAATTTAAATAAAATAATAAAATAATAATATTTTTATATTTTTATATGTTTTTATTTAAAAAAATTAAAAACTAATTTTTTTAATTAAAATAATAGTGCCACGTCAGCAACCGTTAGTATTTAACAGAAAAATAGACGGCAGGGACCAAAGTGCTACTTATCTCAAACCTCAGGGGTATTTTTGTTGAGTTTGAAAACTCAGGGACCAAACTGTCACTTAACCCAAACTTCAGGGACCAAAAGTGTGTTTTTCCCTAGAATAATTCATTTCGAAATTCACCAATTAGTAAAATAATAGAAAACTTGGTAAAAATAACCACTCACTATACTCTTGGTGCGAAAATTTCAATTTGGAACCACTCCAATTCGTTTGACCTAGAACATTAATAAAATTAATCATATACTTAATTATTTTCACAAAGAGGGAGTAAACATAGGGATTCTTTTTTTTTTTAATATAGCAGCCCAATTTTTCATTCTTGCATAATGTCTATGATTGCACTAAAATTCCAATTTACTCCTCTTCCCTCATATTAAAACCCAATGTCACTTTGTACCTTCACTCAATTAAATCTTCTTGATGACTCACCTACAAAATTGTACTTTGTCCCACAACTTACCATCTTTTCTTATTATGGCTTATTTTATTTTTCCACTATTCATCTTCTTCTTCCTCTAGCCCACAAACATTTCTTTTCTTCATCTTTTCCATTCTCCCACTCTAGCTTGGTTCTTTTCTTCCTTTATTTCATACTTATTACAATGCTAAAAAGAAGCTTAAAACAATAATAAGCTTATCGATTTATATCTTTGCCCTCGAATTCTTAGTCTCCTCTTCCTCCTTGTTCCTTCATCCTATTCCAAGCCATCTTTATGCAAAATACAATAAACAAAAACCCATATAACTCTTGAGCTTAAGGAAACAAAACACTCACATTAAAAGTGTCCAACCTTATGCATTTTCCTAAATCTCTCAAACTTTAAAGAGAAAGAGCTTACCGGCTTGAAATCGAGTTTATGGACATCTCCAATTTACTTTGGACCTTACCCACGACATTTTTGGTGGTTTTTCAACATTACCGCCACTTTCCGACGACTTTCCGACGAGATTCCGATGACTTCTGGCGAGCCAATGACTTCCAACAACTACTCCATCTTCAATGTGTCTTCTTCCCTCTCTCCCTCTTACTATTTCTCTTCCTTTTCCCTTTCTCTCTTTTCCACCATATTTTCCCTCTGTCTTTCCCCCCTTTCTCTTCTTGCTCGTTGGGCTTCCCCTTTTCTCTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTTTTCTTTTTGTGTGGCTACCATGAAGCCACACTTCATTTTATTTCTTTTTTTTCTTTCTTTTTTTTCCCTCCAAGCTTCCATGGTAAGCTTCTTCTTTTTTTTTTTTTCTTTTTCTTTCTTTATTTTATTTTCTTGTCTCCAAAAATTCATTTTCAACATGTACAAATCTAATTTCTTCTCCTTTTTTTTAATTACTTTTTTTTTACCAAGTTGTATTCCACAATTTAAAAATCCGTTTTAGTTCTATTTCACTTCAAGCCTTCTCCATCATTAAAATATTTCAAAATCAAATGACTAATATATCATATGCATATCCAAATGCTAGGTGACCAAAAGTGGGTCTTACAAATCATTACCTCCTTTTAGGAATTTCGTCCTCGAAATTCAGTCCAAGAGTGCATTCGAACTTCCTTTTTCCTTGTTCTGTTTCATAGAATTTTTTTTTGTCATTAGGAACAGAAGATGGTGTTACAGAAGAGAAGGAGGAAATGAGAAAAGTCTCATATGCTTCGGCAATTGGGAGCTTGATGTATGTCATGCTATGTACTAGACCAGATATTGGTCATGTTGTTGGTGTTGTTAGTCATTTTATGTTTAATCTAGGAATACAACATTGGGAGGCAATCAAGTGCATCGTGAGATATTTGCGAGGCACCTCCAGTTTGAAGCTCACTTTTGGAAGTGGAAAGCTAGTGCTTGTCGGTTACACTGATTCAAATATGGCAGGTGATCTAGATAACCAAAAGTTCACTTCTTGCTATGATAGGACCAAAATAGTCCTATTTTATTGCCTCTAATCTAAGCTTGTTAGAGTCATTTTATGCTTTACTTGTCCTATTTACAGGTTAATTGAGCTTAGGCCATGTCGGGAGTCGATCACGTTAATTGGTGTTAATTCGAGCCAATTACGGAGTTTTTGGAGCCATCTCGATGTCTTGAACGGAGAGGAGGTGTAGAGACCCAACTGTGCTGAAGCAGGCCTGAATTATGACACCGAAAGCCAAAGATTGAAGCCCGAACCGAGCAGAAGCGAGACAAGATTGAGAAAAGAAGCAGGAAGTCGAGATTAGAGGCTAGCGTCGAGACGCTGGTCTTGGCGTCTTGA

mRNA sequence

ATGCTCGCTATCAAGAGCAACTGGTCATACGCCCGCAGAGCAACCCCCAAAGGGCAAAGTACCTCAACACACGACCCAAAGCCTATGTGTGTGTCGAAGTGGGTCCCAATGACCTCATATATCATAACTACACTACGGAAACACATTCACGAAGTGTCGCCGTTGACGTCCGGGAGGCTTTCACACAGTAGTGGACCGTTGAACGGTGGGTCTTTGACTGAAACAGACAGCCCGCCGGTGTCGTCGTCCGAAGAATTCGACGACCTCATTAAGTTTCACAGTGAACAGTACATCACTTGTCATTTCACGCCGGCAACGTCCTCCCTCTTTCCGTCGCCGGCGTCGGAGAGGGAGGCCCTTCTTTTTATTAAAAAAAAAAAGTTAACGGAAAGAGAAGAAAGGAGAGAAGAAAATGGGAGAAAGAAAGAAAAAAAAATTCCGGCTGGCCGCCGCCGCCGTTCGCCGGCAGCCGGCGGGGGTCGGCGACCGGAGCTGAAGAAGAAGGAGATAAGGAGGGAGAAAGAAGTTGGGGAGAAAGAAGTTGGGAGAACAGAAGATGGTGTTACAGAAGAGAAGGAGGAAATGAGAAAAGTCTCATATGCTTCGGCAATTGGGAGCTTGATGTATGTCATGCTATGTACTAGACCAGATATTGGTCATGTTGTTGGTGTTGTTAGTCATTTTATGTTTAATCTAGGAATACAACATTGGGAGGCAATCAAGTGCATCGTGAGATATTTGCGAGGCACCTCCAGTTTGAAGCTCACTTTTGGAAGTGGAAAGCTAGTGCTTGTCGGTTACACTGATTCAAATATGGCAGCCCGAACCGAGCAGAAGCGAGACAAGATTGAGAAAAGAAGCAGGAAGTCGAGATTAGAGGCTAGCGTCGAGACGCTGGTCTTGGCGTCTTGA

Coding sequence (CDS)

ATGCTCGCTATCAAGAGCAACTGGTCATACGCCCGCAGAGCAACCCCCAAAGGGCAAAGTACCTCAACACACGACCCAAAGCCTATGTGTGTGTCGAAGTGGGTCCCAATGACCTCATATATCATAACTACACTACGGAAACACATTCACGAAGTGTCGCCGTTGACGTCCGGGAGGCTTTCACACAGTAGTGGACCGTTGAACGGTGGGTCTTTGACTGAAACAGACAGCCCGCCGGTGTCGTCGTCCGAAGAATTCGACGACCTCATTAAGTTTCACAGTGAACAGTACATCACTTGTCATTTCACGCCGGCAACGTCCTCCCTCTTTCCGTCGCCGGCGTCGGAGAGGGAGGCCCTTCTTTTTATTAAAAAAAAAAAGTTAACGGAAAGAGAAGAAAGGAGAGAAGAAAATGGGAGAAAGAAAGAAAAAAAAATTCCGGCTGGCCGCCGCCGCCGTTCGCCGGCAGCCGGCGGGGGTCGGCGACCGGAGCTGAAGAAGAAGGAGATAAGGAGGGAGAAAGAAGTTGGGGAGAAAGAAGTTGGGAGAACAGAAGATGGTGTTACAGAAGAGAAGGAGGAAATGAGAAAAGTCTCATATGCTTCGGCAATTGGGAGCTTGATGTATGTCATGCTATGTACTAGACCAGATATTGGTCATGTTGTTGGTGTTGTTAGTCATTTTATGTTTAATCTAGGAATACAACATTGGGAGGCAATCAAGTGCATCGTGAGATATTTGCGAGGCACCTCCAGTTTGAAGCTCACTTTTGGAAGTGGAAAGCTAGTGCTTGTCGGTTACACTGATTCAAATATGGCAGCCCGAACCGAGCAGAAGCGAGACAAGATTGAGAAAAGAAGCAGGAAGTCGAGATTAGAGGCTAGCGTCGAGACGCTGGTCTTGGCGTCTTGA

Protein sequence

MLAIKSNWSYARRATPKGQSTSTHDPKPMCVSKWVPMTSYIITTLRKHIHEVSPLTSGRLSHSSGPLNGGSLTETDSPPVSSSEEFDDLIKFHSEQYITCHFTPATSSLFPSPASEREALLFIKKKKLTEREERREENGRKKEKKIPAGRRRRSPAAGGGRRPELKKKEIRREKEVGEKEVGRTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKRDKIEKRSRKSRLEASVETLVLAS

Homology

[Close]

BLAST of Lag0032407 vs. NCBI nr
Match: RVW68760.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 132.5 bits (332), Expect = 6.1e-27
Identity = 64/98 (65.31%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 183 RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKC 242
           R      +EKE+MR+V YASA+GSLMYVM+CTRPDI + VGVVS F+ N G  HWEA+K 
Sbjct: 735 RHSPSTDKEKEDMRRVPYASAVGSLMYVMVCTRPDIAYAVGVVSRFLSNPGRHHWEAVKW 794

Query: 243 IVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR 281
           I+RYLRGTS LKLTFGSGK +LVGYTDS+MA   + +R
Sbjct: 795 IMRYLRGTSKLKLTFGSGKPILVGYTDSDMAGDVDNRR 832

[Close]

BLAST of Lag0032407 vs. NCBI nr
Match: RVW26208.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 132.5 bits (332), Expect = 6.1e-27
Identity = 65/98 (66.33%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 183 RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKC 242
           R    + +EKE+MRKV YAS +GSLMYVM+CTRPDI + VGVVS F+ N G  HWEA+K 
Sbjct: 730 RHNPSIDKEKEDMRKVLYASIVGSLMYVMVCTRPDIAYAVGVVSRFLSNPGRLHWEAVKW 789

Query: 243 IVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR 281
           I+RYLRGTS LKLTFGSGK VLVGYTDSNM    + +R
Sbjct: 790 IMRYLRGTSKLKLTFGSGKPVLVGYTDSNMVGDVDNRR 827

[Close]

BLAST of Lag0032407 vs. NCBI nr
Match: RVW85908.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 131.7 bits (330), Expect = 1.0e-26
Identity = 64/98 (65.31%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 183  RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKC 242
            R      +EKE+MR+V YASA+GSLMYVM+CTRPDI + VGVVS F+ N G  HWEA+K 
Sbjct: 1090 RHSPSTDKEKEDMRRVPYASAVGSLMYVMVCTRPDIAYSVGVVSRFLSNPGRHHWEAVKW 1149

Query: 243  IVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR 281
            I+RYLRGTS LKLTFGSGK +LVGYTDS+MA   + +R
Sbjct: 1150 IMRYLRGTSKLKLTFGSGKPILVGYTDSDMAGDVDNRR 1187

[Close]

BLAST of Lag0032407 vs. NCBI nr
Match: RVW71160.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 131.7 bits (330), Expect = 1.0e-26
Identity = 62/98 (63.27%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 183 RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKC 242
           R    + +EKE+MR+V YA A+GSLMY M+CTRPDI + V VVSHF+ N G  HWEA+K 
Sbjct: 317 RHSPSIDKEKEDMRRVLYALAVGSLMYAMVCTRPDIAYAVSVVSHFLSNPGRHHWEAVKW 376

Query: 243 IVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR 281
           I+RYL+GTS LKLTFG GKL+LVGYTDSNMA   + +R
Sbjct: 377 IMRYLQGTSKLKLTFGGGKLILVGYTDSNMAGDVDNRR 414

[Close]

BLAST of Lag0032407 vs. NCBI nr
Match: RVW64552.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 131.7 bits (330), Expect = 1.0e-26
Identity = 64/98 (65.31%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 183 RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKC 242
           R    + +EKE+MR+V YASA+GSLMY M+CTRPDI + VGVV+ F+ N G  HWEA+K 
Sbjct: 800 RHSPSIDKEKEDMRRVLYASAVGSLMYDMVCTRPDIAYAVGVVNRFLSNPGRLHWEAVKW 859

Query: 243 IVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR 281
           I+RY RGTS LKLTFGSGKLVLVGYTDSNMA   + +R
Sbjct: 860 IMRYFRGTSKLKLTFGSGKLVLVGYTDSNMARDVDNRR 897

[Close]

BLAST of Lag0032407 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.2e-22
Identity = 52/91 (57.14%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 190  EEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRG 249
            EEK  M KV Y+SA+GSLMY M+CTRPDI H VGVVS F+ N G +HWEA+K I+RYLRG
Sbjct: 1101 EEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRG 1160

Query: 250  TSSLKLTFGSGKLVLVGYTDSNMAARTEQKR 281
            T+   L FG    +L GYTD++MA   + ++
Sbjct: 1161 TTGDCLCFGGSDPILKGYTDADMAGDIDNRK 1191

[Close]

BLAST of Lag0032407 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-12
Identity = 37/87 (42.53%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 195 MRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLK 254
           M+ V Y SA+G++MY+M+ TRPD+   VGV+S F  +    HW+A+K ++RYL+ T +  
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 255 LTF-GSGKLVLVGYTDSNMAARTEQKR 281
           L F  +G   LVGY+D++ A   E +R
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRR 87

[Close]

BLAST of Lag0032407 vs. ExPASy Swiss-Prot
Match: Q8W4K5 (VAN3-binding protein OS=Arabidopsis thaliana OX=3702 GN=VAB PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.2e-10
Identity = 47/102 (46.08%), Postives = 62/102 (60.78%), Query Frame = 0


Query: 51  EVSPLTSGRLSHSSGPLN-GGSLTETDSPPVSSSEEFDDLIKFHSEQYITCH-------- 110
           EVSPLTSGRLSHSSGPLN GGS TETDSPP+S S+EFDD+IK+    + T H        
Sbjct: 119 EVSPLTSGRLSHSSGPLNGGGSFTETDSPPISPSDEFDDVIKYF-RTHNTIHPLFSGTGG 178

Query: 111 --FTPATSSLFPSPASEREAL-LFIKKKKLTEREERREENGR 141
              T    S  P   +  + +  ++K +K  ++EE R +N +
Sbjct: 179 SRGTTGNGSNTPMAGTGPKTVGRWLKDRKEKKKEETRTQNAQ 219

[Close]

BLAST of Lag0032407 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 63.2 bits (152), Expect = 6.0e-09
Identity = 30/75 (40.00%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 202  SAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKCIVRYLRGTSSLKLTFGSG- 261
            S IG LMY+MLCTRPD+   V ++S +      + W+ +K ++RYL+GT  +KL F    
Sbjct: 1183 SLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNL 1242

Query: 262  --KLVLVGYTDSNMA 274
              +  ++GY DS+ A
Sbjct: 1243 AFENKIIGYVDSDWA 1257

[Close]

BLAST of Lag0032407 vs. ExPASy TrEMBL
Match: A0A438G971 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_20 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.0e-27
Identity = 64/98 (65.31%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 183 RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKC 242
           R      +EKE+MR+V YASA+GSLMYVM+CTRPDI + VGVVS F+ N G  HWEA+K 
Sbjct: 735 RHSPSTDKEKEDMRRVPYASAVGSLMYVMVCTRPDIAYAVGVVSRFLSNPGRHHWEAVKW 794

Query: 243 IVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR 281
           I+RYLRGTS LKLTFGSGK +LVGYTDS+MA   + +R
Sbjct: 795 IMRYLRGTSKLKLTFGSGKPILVGYTDSDMAGDVDNRR 832

[Close]

BLAST of Lag0032407 vs. ExPASy TrEMBL
Match: A0A438CSN7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_271 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.0e-27
Identity = 65/98 (66.33%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 183 RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKC 242
           R    + +EKE+MRKV YAS +GSLMYVM+CTRPDI + VGVVS F+ N G  HWEA+K 
Sbjct: 730 RHNPSIDKEKEDMRKVLYASIVGSLMYVMVCTRPDIAYAVGVVSRFLSNPGRLHWEAVKW 789

Query: 243 IVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR 281
           I+RYLRGTS LKLTFGSGK VLVGYTDSNM    + +R
Sbjct: 790 IMRYLRGTSKLKLTFGSGKPVLVGYTDSNMVGDVDNRR 827

[Close]

BLAST of Lag0032407 vs. ExPASy TrEMBL
Match: A0A438GG43 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3210 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 5.1e-27
Identity = 62/98 (63.27%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 183 RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKC 242
           R    + +EKE+MR+V YA A+GSLMY M+CTRPDI + V VVSHF+ N G  HWEA+K 
Sbjct: 317 RHSPSIDKEKEDMRRVLYALAVGSLMYAMVCTRPDIAYAVSVVSHFLSNPGRHHWEAVKW 376

Query: 243 IVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR 281
           I+RYL+GTS LKLTFG GKL+LVGYTDSNMA   + +R
Sbjct: 377 IMRYLQGTSKLKLTFGGGKLILVGYTDSNMAGDVDNRR 414

[Close]

BLAST of Lag0032407 vs. ExPASy TrEMBL
Match: A0A438HN89 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3233 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 5.1e-27
Identity = 64/98 (65.31%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 183  RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKC 242
            R      +EKE+MR+V YASA+GSLMYVM+CTRPDI + VGVVS F+ N G  HWEA+K 
Sbjct: 1090 RHSPSTDKEKEDMRRVPYASAVGSLMYVMVCTRPDIAYSVGVVSRFLSNPGRHHWEAVKW 1149

Query: 243  IVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR 281
            I+RYLRGTS LKLTFGSGK +LVGYTDS+MA   + +R
Sbjct: 1150 IMRYLRGTSKLKLTFGSGKPILVGYTDSDMAGDVDNRR 1187

[Close]

BLAST of Lag0032407 vs. ExPASy TrEMBL
Match: A0A438FX55 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1644 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 5.1e-27
Identity = 64/98 (65.31%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 183 RTEDGVTEEKEEMRKVSYASAIGSLMYVMLCTRPDIGHVVGVVSHFMFNLGIQHWEAIKC 242
           R    + +EKE+MR+V YASA+GSLMY M+CTRPDI + VGVV+ F+ N G  HWEA+K 
Sbjct: 800 RHSPSIDKEKEDMRRVLYASAVGSLMYDMVCTRPDIAYAVGVVNRFLSNPGRLHWEAVKW 859

Query: 243 IVRYLRGTSSLKLTFGSGKLVLVGYTDSNMAARTEQKR 281
           I+RY RGTS LKLTFGSGKLVLVGYTDSNMA   + +R
Sbjct: 860 IMRYFRGTSKLKLTFGSGKLVLVGYTDSNMARDVDNRR 897

[Close]

BLAST of Lag0032407 vs. TAIR 10
Match: AT3G63300.1 (FORKED 1 )

HSP 1 Score: 67.4 bits (163), Expect = 2.3e-11
Identity = 47/102 (46.08%), Postives = 62/102 (60.78%), Query Frame = 0


Query: 51  EVSPLTSGRLSHSSGPLN-GGSLTETDSPPVSSSEEFDDLIKFHSEQYITCH-------- 110
           EVSPLTSGRLSHSSGPLN GGS TETDSPP+S S+EFDD+IK+    + T H        
Sbjct: 119 EVSPLTSGRLSHSSGPLNGGGSFTETDSPPISPSDEFDDVIKYF-RTHNTIHPLFSGTGG 178

Query: 111 --FTPATSSLFPSPASEREAL-LFIKKKKLTEREERREENGR 141
              T    S  P   +  + +  ++K +K  ++EE R +N +
Sbjct: 179 SRGTTGNGSNTPMAGTGPKTVGRWLKDRKEKKKEETRTQNAQ 219

[Close]

BLAST of Lag0032407 vs. TAIR 10
Match: AT3G63300.2 (FORKED 1 )

HSP 1 Score: 67.4 bits (163), Expect = 2.3e-11
Identity = 47/102 (46.08%), Postives = 62/102 (60.78%), Query Frame = 0


Query: 51  EVSPLTSGRLSHSSGPLN-GGSLTETDSPPVSSSEEFDDLIKFHSEQYITCH-------- 110
           EVSPLTSGRLSHSSGPLN GGS TETDSPP+S S+EFDD+IK+    + T H        
Sbjct: 3   EVSPLTSGRLSHSSGPLNGGGSFTETDSPPISPSDEFDDVIKYF-RTHNTIHPLFSGTGG 62

Query: 111 --FTPATSSLFPSPASEREAL-LFIKKKKLTEREERREENGR 141
              T    S  P   +  + +  ++K +K  ++EE R +N +
Sbjct: 63  SRGTTGNGSNTPMAGTGPKTVGRWLKDRKEKKKEETRTQNAQ 103

[Close]

BLAST of Lag0032407 vs. TAIR 10
Match: AT4G14740.1 (Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region )

HSP 1 Score: 50.4 bits (119), Expect = 2.9e-06
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 0


Query: 41  IITTLRKHIHEVSPLTSGRLSHSSGPLNGGSLTETDSPPVSSSEEFDDLIKF-----HSE 100
           ++  +  H  EVSP TSGRLSHSSGPLNG   + TDSPPVS  E  DD+ +F     +S 
Sbjct: 96  VMDRILSHSQEVSPRTSGRLSHSSGPLNG---SLTDSPPVSPPES-DDIKQFCRANKNSL 155

Query: 101 QYITCHF--TPATSSLFPSPASEREAL-LFIKKKKLTEREERREENGR 141
             +   F  T AT     + A++ + +  ++K ++  ++EE R  N +
Sbjct: 156 NSVNSQFRSTAATPGPITATATQSKTVGRWLKDRREKKKEETRAHNAQ 199

[Close]

BLAST of Lag0032407 vs. TAIR 10
Match: AT4G14740.2 (Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region )

HSP 1 Score: 50.4 bits (119), Expect = 2.9e-06
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 0


Query: 41  IITTLRKHIHEVSPLTSGRLSHSSGPLNGGSLTETDSPPVSSSEEFDDLIKF-----HSE 100
           ++  +  H  EVSP TSGRLSHSSGPLNG   + TDSPPVS  E  DD+ +F     +S 
Sbjct: 96  VMDRILSHSQEVSPRTSGRLSHSSGPLNG---SLTDSPPVSPPES-DDIKQFCRANKNSL 155

Query: 101 QYITCHF--TPATSSLFPSPASEREAL-LFIKKKKLTEREERREENGR 141
             +   F  T AT     + A++ + +  ++K ++  ++EE R  N +
Sbjct: 156 NSVNSQFRSTAATPGPITATATQSKTVGRWLKDRREKKKEETRAHNAQ 199

[Close]

BLAST of Lag0032407 vs. TAIR 10
Match: AT3G22810.1 (Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region )

HSP 1 Score: 45.8 bits (107), Expect = 7.0e-05
Identity = 36/96 (37.50%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 51  EVSPLTSGRLSHSSGPLNGGSLTETDSPPVSSSEEFDDLIKF------HSEQYITCHFTP 110
           EVSP TSGRLSHSSGPLNG   + TDSPP+ S  + DD+ +F       + QY +   TP
Sbjct: 105 EVSPRTSGRLSHSSGPLNG---SLTDSPPI-SPHQVDDIKQFCRSNNNFNSQYRSTGTTP 164

Query: 111 ATSSLFPSPASEREALLFIKKKKLTEREERREENGR 141
               +  +    +    ++K ++  ++EE R  N +
Sbjct: 165 --GPITATTTQSKTVGRWLKDRREKKKEEMRAHNAQ 194

The following BLAST results are available for this feature:

BLAST of Lag0032407 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW68760.1	6.1e-27	65.31	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW26208.1	6.1e-27	66.33	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW85908.1	1.0e-26	65.31	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW71160.1	1.0e-26	63.27	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW64552.1	1.0e-26	65.31	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Lag0032407 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.2e-22	57.14	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	1.2e-12	42.53	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
Q8W4K5	3.2e-10	46.08	VAN3-binding protein OS=Arabidopsis thaliana OX=3702 GN=VAB PE=1 SV=1	[more]
P04146	6.0e-09	40.00	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Lag0032407 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438G971	3.0e-27	65.31	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438CSN7	3.0e-27	66.33	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438GG43	5.1e-27	63.27	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438HN89	5.1e-27	65.31	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438FX55	5.1e-27	65.31	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of Lag0032407 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63300.1	2.3e-11	46.08	FORKED 1	[more]
AT3G63300.2	2.3e-11	46.08	FORKED 1	[more]
AT4G14740.1	2.9e-06	37.96	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like r...	[more]
AT4G14740.2	2.9e-06	37.96	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like r...	[more]
AT3G22810.1	7.0e-05	37.50	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like r...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 273..293
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..195
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..195
None	No IPR available	PANTHER	PTHR31351:SF31	AUXIN CANALIZATION PROTEIN	coord: 50..142
IPR040269	VAN3-binding protein	PANTHER	PTHR31351	EXPRESSED PROTEIN	coord: 50..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0032407.1	Lag0032407.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding