Lag0032406 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0032406
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Tetratricopeptide repeat (TPR)-like superfamily protein
Location	chr11: 32031103 .. 32031922 (-)
RNA-Seq Expression	Lag0032406
Synteny	Lag0032406

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAATAAGAAATGCGGTGACTTGGACGGCAGTTATAACCGGACTTGTTCGTACAGGGTATAACGAGGAGGGGCTGGCTTACTTTTCTGAAATGGGGAGGTCAAAGGTGGAATATGACTCTTATGCATATGCTATAGCGTTAAAGGCTAGTGCTGATTCGGGTGCACTGAATCATGGAAGAGCAATTCATACACAAACATTGAAGAAAGGTTTCGATGAGAACTCCTTTGTGGCCAATTCGCTAGCTACCATGTATAACAAATGTGGTAAGCTAGATTATGGTTTGTATATGTTTGGCAAGATGAGGACTCCGGATGTTGTTTCGTGGACGACAATTGTAACGACATACGTTCAAATGGGTAAGGAGGAATGTGGGCTTCAAGCATTTAGAAAATGCAGGTAAGCAATGTGATTCCAAAGAATATACATTTGCTGCTGTCATCTCTGGTTGTGCTAATCTTGCAAGGTTGAAGTGGGGGGAACAACTACATGCTCGTGTTTTATGTGTGGGGTTTCTGAATTCTTTATCAGTTGCAAACTCAGTCATGACCATGTACTCAAAATGTGGGGAGTTAGCTTCTGTTTCAAAGGTATTTTGTACAATGAGTTTTAGAGATATCATTTCATGGAGCACTATAATTGCAGCATATTCTCAAGCAGGTTACGACAAAGAAGCCTTCGAGTACCTATCCCGAATGAGAAGTGAAGGACCAAAACCAAATGAGTTTGCTCTGGCTAGCGTGTTAAGTGTATGTGGAAGTATGGCGATTCTCGAGCAAGGGAAGCAACTGCATGCTCATGTTCTGTCTGTTGGTTAG

mRNA sequence

ATGCCAATAAGAAATGCGGTGACTTGGACGGCAGTTATAACCGGACTTGTTCGTACAGGGTATAACGAGGAGGGGCTGGCTTACTTTTCTGAAATGGGGAGGTCAAAGGTGGAATATGACTCTTATGCATATGCTATAGCGTTAAAGGCTAGTGCTGATTCGGGTGCACTGAATCATGGAAGAGCAATTCATACACAAACATTGAAGAAAGGTTTCGATGAGAACTCCTTTGTGGCCAATTCGCTAGCTACCATGTATAACAAATGTGGTAAGCTAGATTATGGTTTGTATATGTTTGGCAAGATGAGGACTCCGGATGTTGTTTCGTGGACGACAATTGTAACGACATACGTTCAAATGGGTAAGGAGGAATGTGGGCTTCAAGCATTTAGAAAATGCAGGTTGAAGTGGGGGGAACAACTACATGCTCGTGTTTTATGTGTGGGGTTTCTGAATTCTTTATCAGTTGCAAACTCAGTCATGACCATGTACTCAAAATGTGGGGAGTTAGCTTCTGTTTCAAAGGTATTTTGTACAATGAGTTTTAGAGATATCATTTCATGGAGCACTATAATTGCAGCATATTCTCAAGCAGGTTACGACAAAGAAGCCTTCGAGTACCTATCCCGAATGAGAAGTGAAGGACCAAAACCAAATGAGTTTGCTCTGGCTAGCGTGTTAAGTGTATGTGGAAGTATGGCGATTCTCGAGCAAGGGAAGCAACTGCATGCTCATGTTCTGTCTGTTGGTTAG

Coding sequence (CDS)

ATGCCAATAAGAAATGCGGTGACTTGGACGGCAGTTATAACCGGACTTGTTCGTACAGGGTATAACGAGGAGGGGCTGGCTTACTTTTCTGAAATGGGGAGGTCAAAGGTGGAATATGACTCTTATGCATATGCTATAGCGTTAAAGGCTAGTGCTGATTCGGGTGCACTGAATCATGGAAGAGCAATTCATACACAAACATTGAAGAAAGGTTTCGATGAGAACTCCTTTGTGGCCAATTCGCTAGCTACCATGTATAACAAATGTGGTAAGCTAGATTATGGTTTGTATATGTTTGGCAAGATGAGGACTCCGGATGTTGTTTCGTGGACGACAATTGTAACGACATACGTTCAAATGGGTAAGGAGGAATGTGGGCTTCAAGCATTTAGAAAATGCAGGTTGAAGTGGGGGGAACAACTACATGCTCGTGTTTTATGTGTGGGGTTTCTGAATTCTTTATCAGTTGCAAACTCAGTCATGACCATGTACTCAAAATGTGGGGAGTTAGCTTCTGTTTCAAAGGTATTTTGTACAATGAGTTTTAGAGATATCATTTCATGGAGCACTATAATTGCAGCATATTCTCAAGCAGGTTACGACAAAGAAGCCTTCGAGTACCTATCCCGAATGAGAAGTGAAGGACCAAAACCAAATGAGTTTGCTCTGGCTAGCGTGTTAAGTGTATGTGGAAGTATGGCGATTCTCGAGCAAGGGAAGCAACTGCATGCTCATGTTCTGTCTGTTGGTTAG

Protein sequence

MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKMRTPDVVSWTTIVTTYVQMGKEECGLQAFRKCRLKWGEQLHARVLCVGFLNSLSVANSVMTMYSKCGELASVSKVFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG

Homology

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BLAST of Lag0032406 vs. NCBI nr
Match: XP_023544313.1 (putative pentatricopeptide repeat-containing protein At3g47840 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 451.1 bits (1159), Expect = 6.4e-123
Identity = 227/273 (83.15%), Postives = 240/273 (87.91%), Query Frame = 0


Query: 1   MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG 60
           MP RN VTWTAVITGLVR GYNE+GLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG
Sbjct: 202 MPTRNTVTWTAVITGLVRAGYNEKGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG 261

Query: 61  RAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKMRTPDVVSWTTIVTTYVQM 120
           RAIHTQTLKKGFDE+SFVANS+ATMYNKCGKLDYGLYM GKMR PDVVSWTTIVTTYVQM
Sbjct: 262 RAIHTQTLKKGFDESSFVANSMATMYNKCGKLDYGLYMLGKMRAPDVVSWTTIVTTYVQM 321

Query: 121 GKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVA 180
           GKEECG+QAFR+                        RLKWGEQLHA VL VGFLN+LSVA
Sbjct: 322 GKEECGIQAFRRMKDSNVIPNEYTFAAVISGCANLARLKWGEQLHAHVLRVGFLNALSVA 381

Query: 181 NSVMTMYSKCGELASVSKVFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPK 240
           NS+MTMYSKCGELASVSKVFC+M+F+D+I+WSTIIAAYSQ GY KEAFEYLS+MRSEGPK
Sbjct: 382 NSIMTMYSKCGELASVSKVFCSMNFKDVITWSTIIAAYSQVGYGKEAFEYLSQMRSEGPK 441

Query: 241 PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG 251
           PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
Sbjct: 442 PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG 474

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BLAST of Lag0032406 vs. NCBI nr
Match: XP_023544314.1 (putative pentatricopeptide repeat-containing protein At3g47840 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 451.1 bits (1159), Expect = 6.4e-123
Identity = 227/273 (83.15%), Postives = 240/273 (87.91%), Query Frame = 0


Query: 1   MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG 60
           MP RN VTWTAVITGLVR GYNE+GLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG
Sbjct: 177 MPTRNTVTWTAVITGLVRAGYNEKGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG 236

Query: 61  RAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKMRTPDVVSWTTIVTTYVQM 120
           RAIHTQTLKKGFDE+SFVANS+ATMYNKCGKLDYGLYM GKMR PDVVSWTTIVTTYVQM
Sbjct: 237 RAIHTQTLKKGFDESSFVANSMATMYNKCGKLDYGLYMLGKMRAPDVVSWTTIVTTYVQM 296

Query: 121 GKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVA 180
           GKEECG+QAFR+                        RLKWGEQLHA VL VGFLN+LSVA
Sbjct: 297 GKEECGIQAFRRMKDSNVIPNEYTFAAVISGCANLARLKWGEQLHAHVLRVGFLNALSVA 356

Query: 181 NSVMTMYSKCGELASVSKVFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPK 240
           NS+MTMYSKCGELASVSKVFC+M+F+D+I+WSTIIAAYSQ GY KEAFEYLS+MRSEGPK
Sbjct: 357 NSIMTMYSKCGELASVSKVFCSMNFKDVITWSTIIAAYSQVGYGKEAFEYLSQMRSEGPK 416

Query: 241 PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG 251
           PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
Sbjct: 417 PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG 449

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BLAST of Lag0032406 vs. NCBI nr
Match: KAG7034130.1 (putative pentatricopeptide repeat-containing protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 450.7 bits (1158), Expect = 8.4e-123
Identity = 227/273 (83.15%), Postives = 239/273 (87.55%), Query Frame = 0


Query: 1   MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG 60
           MP RN V WTAVITGLVR GYNE+GLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG
Sbjct: 202 MPTRNTVAWTAVITGLVRAGYNEKGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG 261

Query: 61  RAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKMRTPDVVSWTTIVTTYVQM 120
           RAIHTQTLKKGFDE+SFVANSLATMYNKCGKLDYGLYM GKMR PDVVSWTT+VTTYVQM
Sbjct: 262 RAIHTQTLKKGFDESSFVANSLATMYNKCGKLDYGLYMLGKMRAPDVVSWTTMVTTYVQM 321

Query: 121 GKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVA 180
           GKEECG+QAFRK                        RLKWGEQLHA VL VGFLN+LSVA
Sbjct: 322 GKEECGIQAFRKMQDSNVIPNEYTFAAVISGCANLARLKWGEQLHAHVLLVGFLNALSVA 381

Query: 181 NSVMTMYSKCGELASVSKVFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPK 240
           NS+MTMYSKCGELASVSKVFC+M+F+D+I+WSTIIAAYSQ GY KEAFEYLS+MRSEGPK
Sbjct: 382 NSIMTMYSKCGELASVSKVFCSMNFKDVITWSTIIAAYSQVGYGKEAFEYLSQMRSEGPK 441

Query: 241 PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG 251
           PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
Sbjct: 442 PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG 474

[Close]

BLAST of Lag0032406 vs. NCBI nr
Match: KAG6603961.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 450.7 bits (1158), Expect = 8.4e-123
Identity = 227/273 (83.15%), Postives = 239/273 (87.55%), Query Frame = 0


Query: 1   MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG 60
           MP RN V WTAVITGLVR GYNE+GLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG
Sbjct: 202 MPTRNTVAWTAVITGLVRAGYNEKGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG 261

Query: 61  RAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKMRTPDVVSWTTIVTTYVQM 120
           RAIHTQTLKKGFDE+SFVANSLATMYNKCGKLDYGLYM GKMR PDVVSWTT+VTTYVQM
Sbjct: 262 RAIHTQTLKKGFDESSFVANSLATMYNKCGKLDYGLYMLGKMRAPDVVSWTTMVTTYVQM 321

Query: 121 GKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVA 180
           GKEECG+QAFRK                        RLKWGEQLHA VL VGFLN+LSVA
Sbjct: 322 GKEECGIQAFRKMQDSNVIPNEYTFAAVISGCANLARLKWGEQLHAHVLLVGFLNALSVA 381

Query: 181 NSVMTMYSKCGELASVSKVFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPK 240
           NS+MTMYSKCGELASVSKVFC+M+F+D+I+WSTIIAAYSQ GY KEAFEYLS+MRSEGPK
Sbjct: 382 NSIMTMYSKCGELASVSKVFCSMNFKDVITWSTIIAAYSQVGYGKEAFEYLSQMRSEGPK 441

Query: 241 PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG 251
           PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
Sbjct: 442 PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG 474

[Close]

BLAST of Lag0032406 vs. NCBI nr
Match: XP_022949984.1 (putative pentatricopeptide repeat-containing protein At3g47840 isoform X1 [Cucurbita moschata])

HSP 1 Score: 449.5 bits (1155), Expect = 1.9e-122
Identity = 226/273 (82.78%), Postives = 240/273 (87.91%), Query Frame = 0


Query: 1   MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG 60
           MP RN VTWTAVITGLVR GYNE+GLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG
Sbjct: 202 MPTRNTVTWTAVITGLVRAGYNEKGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG 261

Query: 61  RAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKMRTPDVVSWTTIVTTYVQM 120
           RAIHTQTLKKGFDE+SFVANSLATMYNKCGKLDYGLYM GKMR PDVVSWTT+VTTYVQM
Sbjct: 262 RAIHTQTLKKGFDESSFVANSLATMYNKCGKLDYGLYMLGKMRAPDVVSWTTMVTTYVQM 321

Query: 121 GKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVA 180
           GKEECG+QAFR+                        RLKWGEQLHA VL VGF+N+LSVA
Sbjct: 322 GKEECGIQAFRRMKDSNVIPNEYTFAAVISGCANLARLKWGEQLHAHVLRVGFVNALSVA 381

Query: 181 NSVMTMYSKCGELASVSKVFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPK 240
           NS+MTMYSKCGELASVSKVFC+M+F+D+I+WSTIIAAYSQ GY KEAFEYLS+MRSEGPK
Sbjct: 382 NSIMTMYSKCGELASVSKVFCSMNFKDVITWSTIIAAYSQVGYGKEAFEYLSQMRSEGPK 441

Query: 241 PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG 251
           PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
Sbjct: 442 PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG 474

[Close]

BLAST of Lag0032406 vs. ExPASy Swiss-Prot
Match: Q9STS9 (Putative pentatricopeptide repeat-containing protein At3g47840 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E43 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 5.2e-67
Identity = 137/273 (50.18%), Postives = 174/273 (63.74%), Query Frame = 0


Query: 1   MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG 60
           MP RNAVTWTA+ITGLV  G  +EGL YFSEM RS+   D+Y +AIALKA A    + +G
Sbjct: 169 MPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYG 228

Query: 61  RAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKMRTPDVVSWTTIVTTYVQM 120
           +AIHT  + +GF     VANSLATMY +CG++  GL +F  M   DVVSWT+++  Y ++
Sbjct: 229 KAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIVAYKRI 288

Query: 121 GKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVA 180
           G+E   ++ F K                        RL WGEQLH  VL +G  +SLSV+
Sbjct: 289 GQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLGLNDSLSVS 348

Query: 181 NSVMTMYSKCGELASVSKVFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPK 240
           NS+M MYS CG L S S +F  M  RDIISWSTII  Y QAG+ +E F+Y S MR  G K
Sbjct: 349 NSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGTK 408

Query: 241 PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG 251
           P +FALAS+LSV G+MA++E G+Q+HA  L  G
Sbjct: 409 PTDFALASLLSVSGNMAVIEGGRQVHALALCFG 441

[Close]

BLAST of Lag0032406 vs. ExPASy Swiss-Prot
Match: Q9CAA8 (Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H22 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.4e-35
Identity = 79/261 (30.27%), Postives = 138/261 (52.87%), Query Frame = 0


Query: 4   RNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAI 63
           +++V+W A+I GL + G  +E +  F EM    ++ D Y +   L A    GA+N G+ I
Sbjct: 233 KDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQI 292

Query: 64  HTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKMRTPDVVSWTTIVTTYVQMGKE 123
           H   ++  F ++ +V ++L  MY KC  L Y   +F +M+  +VVSWT +V  Y Q G+ 
Sbjct: 293 HACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRA 352

Query: 124 ECGL-------------------QAFRKC----RLKWGEQLHARVLCVGFLNSLSVANSV 183
           E  +                   QA   C     L+ G Q H + +  G ++ ++V+NS+
Sbjct: 353 EEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSL 412

Query: 184 MTMYSKCGELASVSKVFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNE 242
           +T+Y KCG++   +++F  M+ RD +SW+ +++AY+Q G   E  +   +M   G KP+ 
Sbjct: 413 VTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDG 472

[Close]

BLAST of Lag0032406 vs. ExPASy Swiss-Prot
Match: Q9STF3 (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR2 PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.4e-33
Identity = 81/268 (30.22%), Postives = 131/268 (48.88%), Query Frame = 0


Query: 4   RNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKAS-ADSGALNH--- 63
           R    W A+   L   G+ EE L  + +M R  VE D + Y   LKA  A    +NH   
Sbjct: 141 RTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMK 200

Query: 64  GRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKMRTPDVVSWTTIVTTYVQ 123
           G+ IH    ++G+  + ++  +L  MY + G +DY  Y+FG M   +VVSW+ ++  Y +
Sbjct: 201 GKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAK 260

Query: 124 MGKEECGLQAFRK-------------------------CRLKWGEQLHARVLCVGFLNSL 183
            GK    L+ FR+                           L+ G+ +H  +L  G  + L
Sbjct: 261 NGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSIL 320

Query: 184 SVANSVMTMYSKCGELASVSKVFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSE 243
            V ++++TMY +CG+L    +VF  M  RD++SW+++I++Y   GY K+A +    M + 
Sbjct: 321 PVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLAN 380

[Close]

BLAST of Lag0032406 vs. ExPASy Swiss-Prot
Match: Q9FXA9 (Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E64 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.4e-32
Identity = 78/260 (30.00%), Postives = 128/260 (49.23%), Query Frame = 0


Query: 3   IRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRA 62
           ++N VTWT +ITG    G    GL  + +M     E   Y   IA++ASA   ++  G+ 
Sbjct: 175 VKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASIDSVTTGKQ 234

Query: 63  IHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKMRTPDVVSWTTIVTTYVQMGK 122
           IH   +K+GF  N  V NS+  +Y +CG L    + F +M   D+++W T+++   +   
Sbjct: 235 IHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISELERSDS 294

Query: 123 EECGL--QAFRK--------------------CRLKWGEQLHARVLCVGFLNSLSVANSV 182
            E  L  Q F                        L  G+QLH R+   GF  ++ +AN++
Sbjct: 295 SEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANAL 354

Query: 183 MTMYSKCGELASVSKVFC-TMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPN 240
           + MY+KCG +    +VF   +  R+++SW++++  Y   GY  EA E   +M S G +P+
Sbjct: 355 IDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPD 414

[Close]

BLAST of Lag0032406 vs. ExPASy Swiss-Prot
Match: Q9LTV8 (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.1e-31
Identity = 79/271 (29.15%), Postives = 134/271 (49.45%), Query Frame = 0


Query: 1   MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG 60
           +P      W A+I G  R  + ++ L  +S M  ++V  DS+ +   LKA +    L  G
Sbjct: 79  LPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMG 138

Query: 61  RAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKMRTPD--VVSWTTIVTTYV 120
           R +H Q  + GFD + FV N L  +Y KC +L     +F  +  P+  +VSWT IV+ Y 
Sbjct: 139 RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYA 198

Query: 121 QMGKEECGLQAFRKCR-----------------------LKWGEQLHARVLCVGFLNSLS 180
           Q G+    L+ F + R                       LK G  +HA V+ +G      
Sbjct: 199 QNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPD 258

Query: 181 VANSVMTMYSKCGELASVSKVFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEG 240
           +  S+ TMY+KCG++A+   +F  M   ++I W+ +I+ Y++ GY +EA +    M ++ 
Sbjct: 259 LLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKD 318

Query: 241 PKPNEFALASVLSVCGSMAILEQGKQLHAHV 247
            +P+  ++ S +S C  +  LEQ + ++ +V
Sbjct: 319 VRPDTISITSAISACAQVGSLEQARSMYEYV 349

[Close]

BLAST of Lag0032406 vs. ExPASy TrEMBL
Match: A0A6J1GEH8 (putative pentatricopeptide repeat-containing protein At3g47840 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453211 PE=4 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 9.1e-123
Identity = 226/273 (82.78%), Postives = 240/273 (87.91%), Query Frame = 0


Query: 1   MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG 60
           MP RN VTWTAVITGLVR GYNE+GLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG
Sbjct: 202 MPTRNTVTWTAVITGLVRAGYNEKGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG 261

Query: 61  RAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKMRTPDVVSWTTIVTTYVQM 120
           RAIHTQTLKKGFDE+SFVANSLATMYNKCGKLDYGLYM GKMR PDVVSWTT+VTTYVQM
Sbjct: 262 RAIHTQTLKKGFDESSFVANSLATMYNKCGKLDYGLYMLGKMRAPDVVSWTTMVTTYVQM 321

Query: 121 GKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVA 180
           GKEECG+QAFR+                        RLKWGEQLHA VL VGF+N+LSVA
Sbjct: 322 GKEECGIQAFRRMKDSNVIPNEYTFAAVISGCANLARLKWGEQLHAHVLRVGFVNALSVA 381

Query: 181 NSVMTMYSKCGELASVSKVFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPK 240
           NS+MTMYSKCGELASVSKVFC+M+F+D+I+WSTIIAAYSQ GY KEAFEYLS+MRSEGPK
Sbjct: 382 NSIMTMYSKCGELASVSKVFCSMNFKDVITWSTIIAAYSQVGYGKEAFEYLSQMRSEGPK 441

Query: 241 PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG 251
           PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
Sbjct: 442 PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG 474

[Close]

BLAST of Lag0032406 vs. ExPASy TrEMBL
Match: A0A6J1GEB4 (putative pentatricopeptide repeat-containing protein At3g47840 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453211 PE=4 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 9.1e-123
Identity = 226/273 (82.78%), Postives = 240/273 (87.91%), Query Frame = 0


Query: 1   MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG 60
           MP RN VTWTAVITGLVR GYNE+GLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG
Sbjct: 177 MPTRNTVTWTAVITGLVRAGYNEKGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG 236

Query: 61  RAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKMRTPDVVSWTTIVTTYVQM 120
           RAIHTQTLKKGFDE+SFVANSLATMYNKCGKLDYGLYM GKMR PDVVSWTT+VTTYVQM
Sbjct: 237 RAIHTQTLKKGFDESSFVANSLATMYNKCGKLDYGLYMLGKMRAPDVVSWTTMVTTYVQM 296

Query: 121 GKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVA 180
           GKEECG+QAFR+                        RLKWGEQLHA VL VGF+N+LSVA
Sbjct: 297 GKEECGIQAFRRMKDSNVIPNEYTFAAVISGCANLARLKWGEQLHAHVLRVGFVNALSVA 356

Query: 181 NSVMTMYSKCGELASVSKVFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPK 240
           NS+MTMYSKCGELASVSKVFC+M+F+D+I+WSTIIAAYSQ GY KEAFEYLS+MRSEGPK
Sbjct: 357 NSIMTMYSKCGELASVSKVFCSMNFKDVITWSTIIAAYSQVGYGKEAFEYLSQMRSEGPK 416

Query: 241 PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG 251
           PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
Sbjct: 417 PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG 449

[Close]

BLAST of Lag0032406 vs. ExPASy TrEMBL
Match: A0A6J1IMM7 (putative pentatricopeptide repeat-containing protein At3g47840 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478417 PE=4 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 7.7e-122
Identity = 225/273 (82.42%), Postives = 239/273 (87.55%), Query Frame = 0


Query: 1   MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG 60
           MP RN VTWTAVITGLVR GYNE+GLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG
Sbjct: 177 MPTRNTVTWTAVITGLVRAGYNEKGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG 236

Query: 61  RAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKMRTPDVVSWTTIVTTYVQM 120
           RAIHTQTLKKGFDE+SFVANSLATMYNKCGKLDYGLYM GKMR PDVVSWTT+VTTYVQM
Sbjct: 237 RAIHTQTLKKGFDESSFVANSLATMYNKCGKLDYGLYMLGKMRAPDVVSWTTMVTTYVQM 296

Query: 121 GKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVA 180
           GKEECG+QAFR+                        RLKWGEQLHA VL VGFLN+LSVA
Sbjct: 297 GKEECGIQAFRRMQDSNVIPNEYTFAAVISGCANLARLKWGEQLHAHVLRVGFLNALSVA 356

Query: 181 NSVMTMYSKCGELASVSKVFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPK 240
           NS+MTMYSKCGELASVSK+FC+M+F+D+I+WSTIIAAYSQ GY KEAFEYLS+MRSEG K
Sbjct: 357 NSIMTMYSKCGELASVSKLFCSMNFKDVITWSTIIAAYSQVGYGKEAFEYLSQMRSEGSK 416

Query: 241 PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG 251
           PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
Sbjct: 417 PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG 449

[Close]

BLAST of Lag0032406 vs. ExPASy TrEMBL
Match: A0A6J1IU19 (putative pentatricopeptide repeat-containing protein At3g47840 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478417 PE=4 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 7.7e-122
Identity = 225/273 (82.42%), Postives = 239/273 (87.55%), Query Frame = 0


Query: 1   MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG 60
           MP RN VTWTAVITGLVR GYNE+GLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG
Sbjct: 202 MPTRNTVTWTAVITGLVRAGYNEKGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG 261

Query: 61  RAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKMRTPDVVSWTTIVTTYVQM 120
           RAIHTQTLKKGFDE+SFVANSLATMYNKCGKLDYGLYM GKMR PDVVSWTT+VTTYVQM
Sbjct: 262 RAIHTQTLKKGFDESSFVANSLATMYNKCGKLDYGLYMLGKMRAPDVVSWTTMVTTYVQM 321

Query: 121 GKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVA 180
           GKEECG+QAFR+                        RLKWGEQLHA VL VGFLN+LSVA
Sbjct: 322 GKEECGIQAFRRMQDSNVIPNEYTFAAVISGCANLARLKWGEQLHAHVLRVGFLNALSVA 381

Query: 181 NSVMTMYSKCGELASVSKVFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPK 240
           NS+MTMYSKCGELASVSK+FC+M+F+D+I+WSTIIAAYSQ GY KEAFEYLS+MRSEG K
Sbjct: 382 NSIMTMYSKCGELASVSKLFCSMNFKDVITWSTIIAAYSQVGYGKEAFEYLSQMRSEGSK 441

Query: 241 PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG 251
           PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
Sbjct: 442 PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG 474

[Close]

BLAST of Lag0032406 vs. ExPASy TrEMBL
Match: A0A6J1DSK9 (putative pentatricopeptide repeat-containing protein At3g47840 OS=Momordica charantia OX=3673 GN=LOC111024006 PE=4 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 5.0e-121
Identity = 226/273 (82.78%), Postives = 239/273 (87.55%), Query Frame = 0


Query: 1   MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG 60
           MP RNAVTWTAVITGLVR GYNEEGL YFS+MGRSKVEYDS+AYAIALKA+ADSGALNHG
Sbjct: 176 MPTRNAVTWTAVITGLVRAGYNEEGLVYFSKMGRSKVEYDSFAYAIALKATADSGALNHG 235

Query: 61  RAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKMRTPDVVSWTTIVTTYVQM 120
           RAIHTQTLKKGF+ENSFVANSLA+MYNKCGKLDYGLYMFGKMRTPDVVSWTTI+T+YVQM
Sbjct: 236 RAIHTQTLKKGFEENSFVANSLASMYNKCGKLDYGLYMFGKMRTPDVVSWTTIITSYVQM 295

Query: 121 GKEECGLQAFRKCR-----------------------LKWGEQLHARVLCVGFLNSLSVA 180
           G+EE GLQAFR+                         LKWG+QLHARVLCVGFLNSLSVA
Sbjct: 296 GEEERGLQAFRRMHESNVIPNEYTFAAVISGCANLSMLKWGQQLHARVLCVGFLNSLSVA 355

Query: 181 NSVMTMYSKCGELASVSKVFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPK 240
           NS+MTMYSKCGELASVSK+FCTM FRDIISWSTIIAA SQA Y +EAF YLSRMRSEGPK
Sbjct: 356 NSIMTMYSKCGELASVSKLFCTMIFRDIISWSTIIAASSQACYGEEAFRYLSRMRSEGPK 415

Query: 241 PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG 251
           PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG
Sbjct: 416 PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG 448

[Close]

BLAST of Lag0032406 vs. TAIR 10
Match: AT3G47840.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 255.8 bits (652), Expect = 3.7e-68
Identity = 137/273 (50.18%), Postives = 174/273 (63.74%), Query Frame = 0


Query: 1   MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG 60
           MP RNAVTWTA+ITGLV  G  +EGL YFSEM RS+   D+Y +AIALKA A    + +G
Sbjct: 169 MPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYG 228

Query: 61  RAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKMRTPDVVSWTTIVTTYVQM 120
           +AIHT  + +GF     VANSLATMY +CG++  GL +F  M   DVVSWT+++  Y ++
Sbjct: 229 KAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIVAYKRI 288

Query: 121 GKEECGLQAFRK-----------------------CRLKWGEQLHARVLCVGFLNSLSVA 180
           G+E   ++ F K                        RL WGEQLH  VL +G  +SLSV+
Sbjct: 289 GQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLGLNDSLSVS 348

Query: 181 NSVMTMYSKCGELASVSKVFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPK 240
           NS+M MYS CG L S S +F  M  RDIISWSTII  Y QAG+ +E F+Y S MR  G K
Sbjct: 349 NSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGTK 408

Query: 241 PNEFALASVLSVCGSMAILEQGKQLHAHVLSVG 251
           P +FALAS+LSV G+MA++E G+Q+HA  L  G
Sbjct: 409 PTDFALASLLSVSGNMAVIEGGRQVHALALCFG 441

[Close]

BLAST of Lag0032406 vs. TAIR 10
Match: AT1G68930.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 150.6 bits (379), Expect = 1.7e-36
Identity = 79/261 (30.27%), Postives = 138/261 (52.87%), Query Frame = 0


Query: 4   RNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAI 63
           +++V+W A+I GL + G  +E +  F EM    ++ D Y +   L A    GA+N G+ I
Sbjct: 233 KDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQI 292

Query: 64  HTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKMRTPDVVSWTTIVTTYVQMGKE 123
           H   ++  F ++ +V ++L  MY KC  L Y   +F +M+  +VVSWT +V  Y Q G+ 
Sbjct: 293 HACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRA 352

Query: 124 ECGL-------------------QAFRKC----RLKWGEQLHARVLCVGFLNSLSVANSV 183
           E  +                   QA   C     L+ G Q H + +  G ++ ++V+NS+
Sbjct: 353 EEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSL 412

Query: 184 MTMYSKCGELASVSKVFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPNE 242
           +T+Y KCG++   +++F  M+ RD +SW+ +++AY+Q G   E  +   +M   G KP+ 
Sbjct: 413 VTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDG 472

[Close]

BLAST of Lag0032406 vs. TAIR 10
Match: AT3G46790.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 142.1 bits (357), Expect = 6.0e-34
Identity = 81/268 (30.22%), Postives = 131/268 (48.88%), Query Frame = 0


Query: 4   RNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKAS-ADSGALNH--- 63
           R    W A+   L   G+ EE L  + +M R  VE D + Y   LKA  A    +NH   
Sbjct: 141 RTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMK 200

Query: 64  GRAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKMRTPDVVSWTTIVTTYVQ 123
           G+ IH    ++G+  + ++  +L  MY + G +DY  Y+FG M   +VVSW+ ++  Y +
Sbjct: 201 GKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAK 260

Query: 124 MGKEECGLQAFRK-------------------------CRLKWGEQLHARVLCVGFLNSL 183
            GK    L+ FR+                           L+ G+ +H  +L  G  + L
Sbjct: 261 NGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSIL 320

Query: 184 SVANSVMTMYSKCGELASVSKVFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSE 243
            V ++++TMY +CG+L    +VF  M  RD++SW+++I++Y   GY K+A +    M + 
Sbjct: 321 PVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLAN 380

[Close]

BLAST of Lag0032406 vs. TAIR 10
Match: AT1G56570.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 139.4 bits (350), Expect = 3.9e-33
Identity = 78/260 (30.00%), Postives = 128/260 (49.23%), Query Frame = 0


Query: 3   IRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRA 62
           ++N VTWT +ITG    G    GL  + +M     E   Y   IA++ASA   ++  G+ 
Sbjct: 175 VKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASIDSVTTGKQ 234

Query: 63  IHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKMRTPDVVSWTTIVTTYVQMGK 122
           IH   +K+GF  N  V NS+  +Y +CG L    + F +M   D+++W T+++   +   
Sbjct: 235 IHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISELERSDS 294

Query: 123 EECGL--QAFRK--------------------CRLKWGEQLHARVLCVGFLNSLSVANSV 182
            E  L  Q F                        L  G+QLH R+   GF  ++ +AN++
Sbjct: 295 SEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANAL 354

Query: 183 MTMYSKCGELASVSKVFC-TMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEGPKPN 240
           + MY+KCG +    +VF   +  R+++SW++++  Y   GY  EA E   +M S G +P+
Sbjct: 355 IDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPD 414

[Close]

BLAST of Lag0032406 vs. TAIR 10
Match: AT3G12770.1 (mitochondrial editing factor 22 )

HSP 1 Score: 137.5 bits (345), Expect = 1.5e-32
Identity = 79/271 (29.15%), Postives = 134/271 (49.45%), Query Frame = 0


Query: 1   MPIRNAVTWTAVITGLVRTGYNEEGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHG 60
           +P      W A+I G  R  + ++ L  +S M  ++V  DS+ +   LKA +    L  G
Sbjct: 79  LPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMG 138

Query: 61  RAIHTQTLKKGFDENSFVANSLATMYNKCGKLDYGLYMFGKMRTPD--VVSWTTIVTTYV 120
           R +H Q  + GFD + FV N L  +Y KC +L     +F  +  P+  +VSWT IV+ Y 
Sbjct: 139 RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYA 198

Query: 121 QMGKEECGLQAFRKCR-----------------------LKWGEQLHARVLCVGFLNSLS 180
           Q G+    L+ F + R                       LK G  +HA V+ +G      
Sbjct: 199 QNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPD 258

Query: 181 VANSVMTMYSKCGELASVSKVFCTMSFRDIISWSTIIAAYSQAGYDKEAFEYLSRMRSEG 240
           +  S+ TMY+KCG++A+   +F  M   ++I W+ +I+ Y++ GY +EA +    M ++ 
Sbjct: 259 LLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKD 318

Query: 241 PKPNEFALASVLSVCGSMAILEQGKQLHAHV 247
            +P+  ++ S +S C  +  LEQ + ++ +V
Sbjct: 319 VRPDTISITSAISACAQVGSLEQARSMYEYV 349

The following BLAST results are available for this feature:

BLAST of Lag0032406 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023544313.1	6.4e-123	83.15	putative pentatricopeptide repeat-containing protein At3g47840 isoform X1 [Cucur...	[more]
XP_023544314.1	6.4e-123	83.15	putative pentatricopeptide repeat-containing protein At3g47840 isoform X2 [Cucur...	[more]
KAG7034130.1	8.4e-123	83.15	putative pentatricopeptide repeat-containing protein [Cucurbita argyrosperma sub...	[more]
KAG6603961.1	8.4e-123	83.15	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]
XP_022949984.1	1.9e-122	82.78	putative pentatricopeptide repeat-containing protein At3g47840 isoform X1 [Cucur...	[more]

BLAST of Lag0032406 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STS9	5.2e-67	50.18	Putative pentatricopeptide repeat-containing protein At3g47840 OS=Arabidopsis th...	[more]
Q9CAA8	2.4e-35	30.27	Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis th...	[more]
Q9STF3	8.4e-33	30.22	Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidop...	[more]
Q9FXA9	5.4e-32	30.00	Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis th...	[more]
Q9LTV8	2.1e-31	29.15	Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX...	[more]

BLAST of Lag0032406 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GEH8	9.1e-123	82.78	putative pentatricopeptide repeat-containing protein At3g47840 isoform X1 OS=Cuc...	[more]
A0A6J1GEB4	9.1e-123	82.78	putative pentatricopeptide repeat-containing protein At3g47840 isoform X2 OS=Cuc...	[more]
A0A6J1IMM7	7.7e-122	82.42	putative pentatricopeptide repeat-containing protein At3g47840 isoform X2 OS=Cuc...	[more]
A0A6J1IU19	7.7e-122	82.42	putative pentatricopeptide repeat-containing protein At3g47840 isoform X1 OS=Cuc...	[more]
A0A6J1DSK9	5.0e-121	82.78	putative pentatricopeptide repeat-containing protein At3g47840 OS=Momordica char...	[more]

BLAST of Lag0032406 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47840.1	3.7e-68	50.18	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G68930.1	1.7e-36	30.27	pentatricopeptide (PPR) repeat-containing protein	[more]
AT3G46790.1	6.0e-34	30.22	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G56570.1	3.9e-33	30.00	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G12770.1	1.5e-32	29.15	mitochondrial editing factor 22	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 105..249 e-value: 2.9E-21 score: 78.2 coord: 2..104 e-value: 2.2E-16 score: 62.1
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 5..50 e-value: 1.1E-7 score: 32.0
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 186..215 e-value: 9.5E-6 score: 25.5 coord: 80..103 e-value: 0.54 score: 10.6 coord: 158..181 e-value: 0.72 score: 10.2
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 7..40 e-value: 6.2E-4 score: 17.8 coord: 186..220 e-value: 1.0E-5 score: 23.4
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 5..39 score: 9.437737
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 184..218 score: 11.180584
None	No IPR available	PANTHER	PTHR24015	OS07G0578800 PROTEIN-RELATED	coord: 3..249
None	No IPR available	PANTHER	PTHR24015:SF1799	OS05G0581300 PROTEIN	coord: 3..249

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0032406.1	Lag0032406.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding