Lag0032399 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0032399
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	lipid phosphate phosphatase epsilon 1, chloroplastic-like
Location	chr11: 31953373 .. 31953959 (+)
RNA-Seq Expression	Lag0032399
Synteny	Lag0032399

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGAACACAAATTTCCACTTTCTTGCAGTGATTTAAACTTCATCAACTTGTAAGTGGATTATGTAGGATCAAATTTGTAAGTGTAGGACTAGCTATATTGTTTAATAACGTTTTGATTCTTTCCAGAGAGCAAGTGGCTTGTAGCTGCCCTCTTTGCTGCTACAATTCTTTTGAGGCATGATGCAGAAGCCTTGTGGACTGCCATGGGATCGGTTATTAATGTTGTACTGTCTATAGTACTGAAAAAGATACTAAACCAAGAGTGGCCTATTGCTACATTGAGATCTAATCCTGGAATGCCCTCTTCTCATGCACAATCCATATTCTTCACTGTCGTATTCGTTGCCCTGTCAGGTAATTTTTTACTATCATTAGGCAACAAGTGATTTTCGAATGGTAGCTCTATTAAGTTGATAGAATGCTTGTCTTGACTCCTATTTGTTGCCCTATCAAGTAATTTCCTACTACATAGGCTTCGTTATCTATGTCTTAAATAATTGGTTCAGGGATGAAAAGTAATTGTAGTGACATGTACAATATTCTGCTACATGCTTGTATTGGATCCTCAGAGTCCCTTCTTTAG

mRNA sequence

ATGTCTGAACACAAATTTCCACTTTCTTGCAGTGATTTAAACTTCATCAACTTCAAGTGGCTTGTAGCTGCCCTCTTTGCTGCTACAATTCTTTTGAGGCATGATGCAGAAGCCTTGTGGACTGCCATGGGATCGGTTATTAATGTTGTACTGTCTATAGTACTGAAAAAGATACTAAACCAAGAGTGGCCTATTGCTACATTGAGATCTAATCCTGGAATGCCCTCTTCTCATGCACAATCCATATTCTTCACTGTCGTATTCGTTGCCCTGTCAGGGATGAAAAGTAATTGTAGTGACATGTACAATATTCTGCTACATGCTTGTATTGGATCCTCAGAGTCCCTTCTTTAG

Coding sequence (CDS)

ATGTCTGAACACAAATTTCCACTTTCTTGCAGTGATTTAAACTTCATCAACTTCAAGTGGCTTGTAGCTGCCCTCTTTGCTGCTACAATTCTTTTGAGGCATGATGCAGAAGCCTTGTGGACTGCCATGGGATCGGTTATTAATGTTGTACTGTCTATAGTACTGAAAAAGATACTAAACCAAGAGTGGCCTATTGCTACATTGAGATCTAATCCTGGAATGCCCTCTTCTCATGCACAATCCATATTCTTCACTGTCGTATTCGTTGCCCTGTCAGGGATGAAAAGTAATTGTAGTGACATGTACAATATTCTGCTACATGCTTGTATTGGATCCTCAGAGTCCCTTCTTTAG

Protein sequence

MSEHKFPLSCSDLNFINFKWLVAALFAATILLRHDAEALWTAMGSVINVVLSIVLKKILNQEWPIATLRSNPGMPSSHAQSIFFTVVFVALSGMKSNCSDMYNILLHACIGSSESLL

Homology

[Close]

BLAST of Lag0032399 vs. NCBI nr
Match: KAA0036211.1 (lipid phosphate phosphatase epsilon 1 [Cucumis melo var. makuwa] >TYK12606.1 lipid phosphate phosphatase epsilon 1 [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 3.1e-27
Identity = 68/77 (88.31%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 19  KWLVAALFAATILLRHDAEALWTAMGSVINVVLSIVLKKILNQEWPIATLRSNPGMPSSH 78
           KWLVAALFAA ILLRHDAEALWTAMGSVIN VLSIVLK+ILNQE PIATLR +PGMPSSH
Sbjct: 111 KWLVAALFAAVILLRHDAEALWTAMGSVINAVLSIVLKRILNQERPIATLRPDPGMPSSH 170

Query: 79  AQSIFFTVVFVALSGMK 96
           AQSIFFTVVFVALS ++
Sbjct: 171 AQSIFFTVVFVALSAVE 187

[Close]

BLAST of Lag0032399 vs. NCBI nr
Match: XP_008440747.1 (PREDICTED: lipid phosphate phosphatase epsilon 1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 3.1e-27
Identity = 68/77 (88.31%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 19  KWLVAALFAATILLRHDAEALWTAMGSVINVVLSIVLKKILNQEWPIATLRSNPGMPSSH 78
           KWLVAALFAA ILLRHDAEALWTAMGSVIN VLSIVLK+ILNQE PIATLR +PGMPSSH
Sbjct: 122 KWLVAALFAAVILLRHDAEALWTAMGSVINAVLSIVLKRILNQERPIATLRPDPGMPSSH 181

Query: 79  AQSIFFTVVFVALSGMK 96
           AQSIFFTVVFVALS ++
Sbjct: 182 AQSIFFTVVFVALSAVE 198

[Close]

BLAST of Lag0032399 vs. NCBI nr
Match: XP_004143525.1 (lipid phosphate phosphatase epsilon 1, chloroplastic [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 6.9e-27
Identity = 67/77 (87.01%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 19  KWLVAALFAATILLRHDAEALWTAMGSVINVVLSIVLKKILNQEWPIATLRSNPGMPSSH 78
           KWLVAALFA  ILLRHDAEALWTAMGSVIN VLSIVLK+ILNQE PIATLRS+PGMPSSH
Sbjct: 122 KWLVAALFAGIILLRHDAEALWTAMGSVINAVLSIVLKRILNQERPIATLRSDPGMPSSH 181

Query: 79  AQSIFFTVVFVALSGMK 96
           AQSIFFTV+FVALS ++
Sbjct: 182 AQSIFFTVLFVALSAVE 198

[Close]

BLAST of Lag0032399 vs. NCBI nr
Match: KGN49269.2 (hypothetical protein Csa_003531 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 6.9e-27
Identity = 67/77 (87.01%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 19  KWLVAALFAATILLRHDAEALWTAMGSVINVVLSIVLKKILNQEWPIATLRSNPGMPSSH 78
           KWLVAALFA  ILLRHDAEALWTAMGSVIN VLSIVLK+ILNQE PIATLRS+PGMPSSH
Sbjct: 48  KWLVAALFAGIILLRHDAEALWTAMGSVINAVLSIVLKRILNQERPIATLRSDPGMPSSH 107

Query: 79  AQSIFFTVVFVALSGMK 96
           AQSIFFTV+FVALS ++
Sbjct: 108 AQSIFFTVLFVALSAVE 124

[Close]

BLAST of Lag0032399 vs. NCBI nr
Match: XP_038881096.1 (lipid phosphate phosphatase epsilon 1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 130.6 bits (327), Expect = 9.0e-27
Identity = 67/77 (87.01%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 19  KWLVAALFAATILLRHDAEALWTAMGSVINVVLSIVLKKILNQEWPIATLRSNPGMPSSH 78
           KWLVAALFAA ILLRHDAEALWTAMGSVIN VLS+VLK+ILNQE PIATLRS+PGMPSSH
Sbjct: 121 KWLVAALFAAIILLRHDAEALWTAMGSVINAVLSMVLKRILNQERPIATLRSDPGMPSSH 180

Query: 79  AQSIFFTVVFVALSGMK 96
           AQSIFF VVFVALS ++
Sbjct: 181 AQSIFFAVVFVALSAVE 197

[Close]

BLAST of Lag0032399 vs. ExPASy Swiss-Prot
Match: Q6NQL6 (Lipid phosphate phosphatase epsilon 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LPPE2 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.4e-21
Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 19  KWLVAALFAATILLRHDAEALWTAMGSVINVVLSIVLKKILNQEWPIATLRSNPGMPSSH 78
           KW+VAALF + +LLRHD  ALW  +GSV N VLS+ LK+ILNQE P+ATLRS+PGMPSSH
Sbjct: 113 KWIVAALFGSVLLLRHDGAALWAVIGSVSNSVLSVALKRILNQERPVATLRSDPGMPSSH 172

Query: 79  AQSIFFTVVFVALSGMKSNCSDMYNILLHACI 111
           AQSI F  VF   S M+   +++ ++ L   I
Sbjct: 173 AQSISFISVFSVFSVMEWLGTNVLSLFLSGFI 204

[Close]

BLAST of Lag0032399 vs. ExPASy Swiss-Prot
Match: F4J220 (Lipid phosphate phosphatase epsilon 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LPPE1 PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.8e-20
Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 19  KWLVAALFAATILLRHDAEALWTAMGSVINVVLSIVLKKILNQEWPIATLRSNPGMPSSH 78
           KW+V+ LF + ILLRHD  ALW  +GS+ N  LS+VLK+ILNQE P  TLRS+PGMPSSH
Sbjct: 106 KWVVSVLFGSIILLRHDGAALWAVIGSISNSALSVVLKRILNQERPTTTLRSDPGMPSSH 165

Query: 79  AQSIFFTVVFVALSGMK 96
           AQSI F  VF  LS M+
Sbjct: 166 AQSISFISVFAVLSVME 182

The following BLAST results are available for this feature:

BLAST of Lag0032399 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036211.1	3.1e-27	88.31	lipid phosphate phosphatase epsilon 1 [Cucumis melo var. makuwa] >TYK12606.1 lip...	[more]
XP_008440747.1	3.1e-27	88.31	PREDICTED: lipid phosphate phosphatase epsilon 1, chloroplastic-like [Cucumis me...	[more]
XP_004143525.1	6.9e-27	87.01	lipid phosphate phosphatase epsilon 1, chloroplastic [Cucumis sativus]	[more]
KGN49269.2	6.9e-27	87.01	hypothetical protein Csa_003531 [Cucumis sativus]	[more]
XP_038881096.1	9.0e-27	87.01	lipid phosphate phosphatase epsilon 1, chloroplastic-like [Benincasa hispida]	[more]

BLAST of Lag0032399 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQL6	3.4e-21	57.61	Lipid phosphate phosphatase epsilon 2, chloroplastic OS=Arabidopsis thaliana OX=...	[more]
F4J220	3.8e-20	63.64	Lipid phosphate phosphatase epsilon 1, chloroplastic OS=Arabidopsis thaliana OX=...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11247	PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1	coord: 19..110
None	No IPR available	PANTHER	PTHR11247:SF40	LIPID PHOSPHATE PHOSPHATASE EPSILON 1, CHLOROPLASTIC	coord: 19..110
IPR036938	Phosphatidic acid phosphatase type 2/haloperoxidase superfamily	SUPERFAMILY	48317	Acid phosphatase/Vanadium-dependent haloperoxidase	coord: 18..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0032399.1	Lag0032399.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0008610	lipid biosynthetic process
biological_process	GO:0006487	protein N-linked glycosylation
cellular_component	GO:0030176	integral component of endoplasmic reticulum membrane
molecular_function	GO:0047874	dolichyldiphosphatase activity
molecular_function	GO:0004601	peroxidase activity