Lag0032357 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032357
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr11: 31234962 .. 31235753 (-)
RNA-Seq ExpressionLag0032357
SyntenyLag0032357
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTTAGTAAATCTCCTTGGCATTAAGCTTCTTGATTCTTTGGGATACTATCTGGGTATGCCCTCTCAAAGGAGAAAGCACCAAGTGTTCTGGAAGTTGAAAGAAAAAATCTGGAATACCCTTCAGGACTGGAAAGATCACCTATTTTCGATGGGAGGGAAGGAGACATTGATCGAACCCATTGCCCAAGCCATCTCATCCTATACCATGAGCTATTTCAAGCTCCCCAAGGCCATTTGCGAGAAGATCAATAAGCATTATGCTAAATTCTGGTGGGGTTCGATTGGGGACAAAAAAAAAAAGTTCATTGGATGAGTTGGAAGAGGTTGTGTGCTAGTAAGGATAGTGGTGGGATTGGCTTTAGAGAGATTTACCTCTTTAAGTTATGCTCACAATTTTCTTGAAGCCTCTTTAGGAAACAATCCCTACCTTACGGGAAAGCATCCTTTGGCTAAGGGTATGAGTATGAAGTCGAGAGTTGGTAACGGTAATCACATCAGTATCAAAGATGATCCTTGACTCCATCCCCACCCAAGCTAAAATTTTAGCTAAAGACATTGATACTAATCCATGTTTAGTGTGCAAGAAAAATTTGGAAACAGGGGAGCACTTGTTCTGGCTTTAAAAGGTCTCTAAGGCTGTTTGGATTTCGTTATTCCCTAATTTATCTTTGGTTGCTAATTTTTTGGATCCGTTAGGGAGGTGGGAGAAGCTTGCGGGATCAATCAGGGAAAAGGATTTGCCTACTGCAATCAGGCTAATTTGGAGCACATGGAACCACAGGAATGA

mRNA sequence

ATGAGCTTAGTAAATCTCCTTGGCATTAAGCTTCTTGATTCTTTGGGATACTATCTGGGTATGCCCTCTCAAAGGAGAAAGCACCAAGTGTTCTGGAAGTTGAAAGAAAAAATCTGGAATACCCTTCAGGACTGGAAAGATCACCTATTTTCGATGGGAGGGAAGGAGACATTGATCGAACCCATTGCCCAAGCCATCTCATCCTATACCATGAGCTATTTCAAGCTCCCCAAGGCCATTTGCGAGAAGATCAATAAGCATTATGCTAAATTCTGGGAGGTGGGAGAAGCTTGCGGGATCAATCAGGGAAAAGGATTTGCCTACTGCAATCAGGCTAATTTGGAGCACATGGAACCACAGGAATGA

Coding sequence (CDS)

ATGAGCTTAGTAAATCTCCTTGGCATTAAGCTTCTTGATTCTTTGGGATACTATCTGGGTATGCCCTCTCAAAGGAGAAAGCACCAAGTGTTCTGGAAGTTGAAAGAAAAAATCTGGAATACCCTTCAGGACTGGAAAGATCACCTATTTTCGATGGGAGGGAAGGAGACATTGATCGAACCCATTGCCCAAGCCATCTCATCCTATACCATGAGCTATTTCAAGCTCCCCAAGGCCATTTGCGAGAAGATCAATAAGCATTATGCTAAATTCTGGGAGGTGGGAGAAGCTTGCGGGATCAATCAGGGAAAAGGATTTGCCTACTGCAATCAGGCTAATTTGGAGCACATGGAACCACAGGAATGA

Protein sequence

MSLVNLLGIKLLDSLGYYLGMPSQRRKHQVFWKLKEKIWNTLQDWKDHLFSMGGKETLIEPIAQAISSYTMSYFKLPKAICEKINKHYAKFWEVGEACGINQGKGFAYCNQANLEHMEPQE
Homology
BLAST of Lag0032357 vs. NCBI nr
Match: XP_022145148.1 (uncharacterized protein LOC111014662 [Momordica charantia])

HSP 1 Score: 92.4 bits (228), Expect = 2.8e-15
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = 0

Query: 7   LGIKLLDSLGYYLGMPSQ--RRKHQVFWKLKEKIWNTLQDWKDHLFSMGGKETLIEPIAQ 66
           L +   + +G YLG+PSQ  R K QVF  +  ++W  LQ WK+ LFS GGKE LI+ +AQ
Sbjct: 27  LHVTRTNCMGQYLGLPSQTSRNKCQVFNNILNRVWQFLQGWKEKLFSSGGKEVLIKAVAQ 86

Query: 67  AISSYTMSYFKLPKAICEKINKHYAKFW 93
           AI +Y+MS F+ P  +C++IN  YA+FW
Sbjct: 87  AIPNYSMSCFRFPMNLCKEINSLYARFW 114

BLAST of Lag0032357 vs. NCBI nr
Match: XP_012087680.1 (uncharacterized protein LOC105646435 [Jatropha curcas])

HSP 1 Score: 90.9 bits (224), Expect = 8.2e-15
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 0

Query: 3   LVNLLGIKLLDSLGYYLGMPSQ--RRKHQVFWKLKEKIWNTLQDWKDHLFSMGGKETLIE 62
           + N LG++  DSLG YLG+PS   R+K +VF  LK++IW  +  WKD + S  GKE L++
Sbjct: 163 ICNTLGVEEKDSLGCYLGLPSHVGRKKREVFGYLKDRIWRKVSSWKDGMLSRAGKEILLK 222

Query: 63  PIAQAISSYTMSYFKLPKAICEKINKHYAKFW 93
            + QA+ SY MS F LPK +C +I     KFW
Sbjct: 223 TVLQAMPSYVMSLFLLPKTLCSEIEGIMNKFW 254

BLAST of Lag0032357 vs. NCBI nr
Match: VVA37427.1 (PREDICTED: reverse mRNAase, partial [Prunus dulcis])

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-14
Identity = 45/94 (47.87%), Postives = 58/94 (61.70%), Query Frame = 0

Query: 1   MSLVNLLGIKLLDSLGYYLGMPS--QRRKHQVFWKLKEKIWNTLQDWKDHLFSMGGKETL 60
           + L   +GI  +D    YLG+P    ++K   F  LKE++W  LQ WK  L S  GKE L
Sbjct: 26  LMLAQFMGIPCVDHHSQYLGLPMVLDKKKGASFNHLKERLWKKLQTWKGKLLSGAGKEIL 85

Query: 61  IEPIAQAISSYTMSYFKLPKAICEKINKHYAKFW 93
           I+ +AQAI  YTMSYF LPK +CE +NK  A+FW
Sbjct: 86  IKVVAQAIPIYTMSYFLLPKYVCEDLNKLVAQFW 119

BLAST of Lag0032357 vs. NCBI nr
Match: XP_034218997.1 (uncharacterized protein LOC117630370 [Prunus dulcis])

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-14
Identity = 45/94 (47.87%), Postives = 58/94 (61.70%), Query Frame = 0

Query: 1   MSLVNLLGIKLLDSLGYYLGMPS--QRRKHQVFWKLKEKIWNTLQDWKDHLFSMGGKETL 60
           + L   +GI  +D    YLG+P    ++K   F  LKE++W  LQ WK  L S  GKE L
Sbjct: 562 LMLAQFMGIPCVDHHSQYLGLPMVLDKKKGASFNHLKERLWKKLQTWKGKLLSGAGKEIL 621

Query: 61  IEPIAQAISSYTMSYFKLPKAICEKINKHYAKFW 93
           I+ +AQAI  YTMSYF LPK +CE +NK  A+FW
Sbjct: 622 IKVVAQAIPIYTMSYFLLPKYVCEDLNKLVAQFW 655

BLAST of Lag0032357 vs. NCBI nr
Match: XP_030505362.1 (uncharacterized protein LOC115720349 [Cannabis sativa])

HSP 1 Score: 88.6 bits (218), Expect = 4.1e-14
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 0

Query: 3   LVNLLGIKLLDSLGYYLGMPS--QRRKHQVFWKLKEKIWNTLQDWKDHLFSMGGKETLIE 62
           L N LG+ L+     YLG+PS   RRK +VF  +K+K+WN L+ WK  +FS  GKE LI+
Sbjct: 316 LANRLGVSLVGQHTKYLGLPSFIGRRKKEVFEMIKDKVWNKLKSWKSTMFSQAGKEILIK 375

Query: 63  PIAQAISSYTMSYFKLPKAICEKINKHYAKFW 93
            + QAI SY+MS F+LPK +   ++   A FW
Sbjct: 376 AVIQAIPSYSMSCFRLPKKLIHSLHSLAANFW 407

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022145148.12.8e-1548.86uncharacterized protein LOC111014662 [Momordica charantia][more]
XP_012087680.18.2e-1546.74uncharacterized protein LOC105646435 [Jatropha curcas][more]
VVA37427.11.8e-1447.87PREDICTED: reverse mRNAase, partial [Prunus dulcis][more]
XP_034218997.11.8e-1447.87uncharacterized protein LOC117630370 [Prunus dulcis][more]
XP_030505362.14.1e-1446.74uncharacterized protein LOC115720349 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33116:SF45SUBFAMILY NOT NAMEDcoord: 4..98
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 4..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032357.1Lag0032357.1mRNA