Lag0032329 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032329
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr11: 30578051 .. 30578497 (+)
RNA-Seq ExpressionLag0032329
SyntenyLag0032329
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACCAAAATTCAGAATAGGAAAAGTGATTGGGTGCGAATTCAACTTCAGTTTGATTGTGGTTTGATAGTTCCTCGTTCGGGTTTAAGTGGTGGTCTAATGCTACTATGGAACAGGGAGACTGATGTTACTATTAGATCTTTTTCTAAGGGACATATTGATGCAATTGTCAAGGATAAACAGGGCTCTTGGAGGTTCTCTGGAATTTATGGAAACCCACATCGAGATGCACACTATGAGACGTGGGCTTTGATGAATCGATTAAAAGACAACTCTGGATTACCATGGGTTCTGGGGGAGATTTCAACGAAATCACTAGCAACAATGAGAAAATGGGAGGTGTGCAGCGGAATGAAAGGGCGATGCAAGACTTTAGAGAAAGCATTGATATTTGTAACCTTAGCGATCCGGGTTTATTGGACCAGAGTATACTTGGTGCAATAA

mRNA sequence

ATGGAAACCAAAATTCAGAATAGGAAAAGTGATTGGGTGCGAATTCAACTTCAGTTTGATTGTGGTTTGATAGTTCCTCGTTCGGGTTTAAGTGGTGGTCTAATGCTACTATGGAACAGGGAGACTGATGTTACTATTAGATCTTTTTCTAAGGGACATATTGATGCAATTGTCAAGGATAAACAGGGCTCTTGGAGGTTCTCTGGAATTTATGGAAACCCACATCGAGATGCACACTATGAGACGTGGGCTTTGATGAATCGATTAAAAGACAACTCTGGATTACCATGGGTTCTGGGGGAGATTTCAACGAAATCACTAGCAACAATGAGAAAATGGGAGGTGTGCAGCGGAATGAAAGGGCGATGCAAGACTTTAGAGAAAGCATTGATATTTGTAACCTTAGCGATCCGGGTTTATTGGACCAGAGTATACTTGGTGCAATAA

Coding sequence (CDS)

ATGGAAACCAAAATTCAGAATAGGAAAAGTGATTGGGTGCGAATTCAACTTCAGTTTGATTGTGGTTTGATAGTTCCTCGTTCGGGTTTAAGTGGTGGTCTAATGCTACTATGGAACAGGGAGACTGATGTTACTATTAGATCTTTTTCTAAGGGACATATTGATGCAATTGTCAAGGATAAACAGGGCTCTTGGAGGTTCTCTGGAATTTATGGAAACCCACATCGAGATGCACACTATGAGACGTGGGCTTTGATGAATCGATTAAAAGACAACTCTGGATTACCATGGGTTCTGGGGGAGATTTCAACGAAATCACTAGCAACAATGAGAAAATGGGAGGTGTGCAGCGGAATGAAAGGGCGATGCAAGACTTTAGAGAAAGCATTGATATTTGTAACCTTAGCGATCCGGGTTTATTGGACCAGAGTATACTTGGTGCAATAA

Protein sequence

METKIQNRKSDWVRIQLQFDCGLIVPRSGLSGGLMLLWNRETDVTIRSFSKGHIDAIVKDKQGSWRFSGIYGNPHRDAHYETWALMNRLKDNSGLPWVLGEISTKSLATMRKWEVCSGMKGRCKTLEKALIFVTLAIRVYWTRVYLVQ
Homology
BLAST of Lag0032329 vs. NCBI nr
Match: XP_022157437.1 (uncharacterized protein LOC111024135 [Momordica charantia])

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-18
Identity = 47/99 (47.47%), Postives = 62/99 (62.63%), Query Frame = 0

Query: 2   ETKIQNRKSDWVRIQLQFDCGLIVPRSGLSGGLMLLWNRETDVTIRSFSKGHIDAIVKDK 61
           ETK         + +L FDC + V  +G SGGLMLLWN +++V I+S S GHID+I+ DK
Sbjct: 36  ETKGNPTLEGRAKRELSFDCCVSVASTGKSGGLMLLWNSDSNVRIQSMSPGHIDSIITDK 95

Query: 62  QGSWRFSGIYGNPHRDAHYETWALMNRLKDNSGLPWVLG 101
            GSWRF+G YGNP       +W L+ RL     LPW++G
Sbjct: 96  YGSWRFTGFYGNPCTYKRSASWKLLERLARMMDLPWIIG 134

BLAST of Lag0032329 vs. NCBI nr
Match: XP_023903659.1 (uncharacterized protein LOC112015491 [Quercus suber])

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-18
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 0

Query: 1   METKIQNRKSDWVRIQLQFDCGLIVPRSGLSGGLMLLWNRETDVTIRSFSKGHIDAIVKD 60
           METK+   + D ++  L+   GL+VP    SGGL+LLW +E  V+++S+S+ HIDAIV  
Sbjct: 35  METKLVVAEFDSIKEGLKRSQGLVVPSIRRSGGLVLLWKKELSVSVQSYSESHIDAIVNQ 94

Query: 61  KQGS--WRFSGIYGNPHRDAHYETWALMNRLKDNSGLPWV 99
             GS  WRF+G YGNP      E+W L+ RL  N+ LPWV
Sbjct: 95  NDGSQKWRFTGFYGNPDTSRREESWVLLKRLSSNNSLPWV 134

BLAST of Lag0032329 vs. NCBI nr
Match: XP_023871998.1 (uncharacterized protein LOC111984613 [Quercus suber])

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-18
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 0

Query: 1   METKIQNRKSDWVRIQLQFDCGLIVPRSGLSGGLMLLWNRETDVTIRSFSKGHIDAIVKD 60
           METK+   + D ++  L+   GL+VP    SGGL+LLW +E  V+++S+S+ HIDAIV  
Sbjct: 35  METKLVVTEFDSIKEGLKRSQGLVVPSIRRSGGLVLLWKKELSVSVQSYSESHIDAIVNQ 94

Query: 61  KQGS--WRFSGIYGNPHRDAHYETWALMNRLKDNSGLPWV 99
             GS  WRF+G YGNP      E+W L+ RL  N+ LPWV
Sbjct: 95  NDGSQKWRFTGFYGNPDTSRREESWVLLKRLSSNNSLPWV 134

BLAST of Lag0032329 vs. NCBI nr
Match: XP_028068804.1 (uncharacterized protein LOC114271378 [Camellia sinensis])

HSP 1 Score: 102.1 bits (253), Expect = 4.3e-18
Identity = 52/138 (37.68%), Postives = 76/138 (55.07%), Query Frame = 0

Query: 1   METKIQNRKSDWVRIQLQFDCGLIVPRSGLSGGLMLLWNRETDVTIRSFSKGHIDAIVKD 60
           METK  +RK +W R +L    GL V R GLSGGL L W     V+IR++S GH+DA+V+ 
Sbjct: 35  METKCVSRKIEWFRCKLGLARGLFVDRMGLSGGLALFWRMGVSVSIRNYSSGHVDAVVES 94

Query: 61  KQ--GSWRFSGIYGNPHRDAHYETWALMNRLKDNSGLPWVLGEISTKSLATMRKWEVCSG 120
               G+WRF+G YG+P     +++W L+ RL     LPW++ E   + L    K  +   
Sbjct: 95  DGGIGNWRFTGFYGHPEVVKKWDSWELLRRLGGLDDLPWLVVEDFNEILLPSEKLGLGDR 154

Query: 121 MKGRCKTLEKALIFVTLA 137
            + +    + AL   +LA
Sbjct: 155 SRAQIDAFQHALSDCSLA 172

BLAST of Lag0032329 vs. NCBI nr
Match: TXG59697.1 (hypothetical protein EZV62_014270 [Acer yangbiense])

HSP 1 Score: 100.1 bits (248), Expect = 1.6e-17
Identity = 48/98 (48.98%), Postives = 65/98 (66.33%), Query Frame = 0

Query: 2   ETKIQNRKSDWVRIQLQFDCGLIVPRSGLSGGLMLLWNRETDVTIRSFSKGHIDAIVKDK 61
           ETK+   K+  ++  LQF  G IV   G+SG LMLLW +E  V+I+SFS GHIDA ++ +
Sbjct: 36  ETKVSGHKASSIKDSLQFGDGFIVDCVGMSGDLMLLWKKELLVSIQSFSVGHIDACIQME 95

Query: 62  QG-SWRFSGIYGNPHRDAHYETWALMNRLKDNSGLPWV 99
            G +WRFSG YG+P       +WAL+ RL+D + LPWV
Sbjct: 96  DGFTWRFSGFYGDPIPSKRVCSWALLRRLRDVNLLPWV 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022157437.11.1e-1847.47uncharacterized protein LOC111024135 [Momordica charantia][more]
XP_023903659.12.5e-1847.00uncharacterized protein LOC112015491 [Quercus suber][more]
XP_023871998.12.5e-1847.00uncharacterized protein LOC111984613 [Quercus suber][more]
XP_028068804.14.3e-1837.68uncharacterized protein LOC114271378 [Camellia sinensis][more]
TXG59697.11.6e-1748.98hypothetical protein EZV62_014270 [Acer yangbiense][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 16..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032329.1Lag0032329.1mRNA