Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATTCAAGACTTCTTCGATGGTCGCTGTCGAGATCAAGTCTTACATGGGTTCAACTGCCCATTGTTGCTTCAATGAACTGAGGTTGCAAGAAGATAAAGCTTCTATCATTGCAAGCGAAGAAACAACCTTGCAGGGGGCATATACCAATGACAAGTTTCTTGTTAAGTATAACCCTCTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGACTGAGATGCAAGAACACATCAACAACTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCGTAAAAAATCACGACAAAGGAAAGTCTATAGTGCAAGATGATCATCCACAATGTTCTGTTTTGGTCGCTTCACTATCCATCCAACAGCTCGAAGATATGATCACAAACTGTATCAGATCTCCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTCAATTCTAAAGCTGGCTATGGAAAGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAGCAAACATCAAAGAAAGAAGGATCCTAAGAAACTTCAACCCAAGAGAAAGAGAAGTAAAAAGTTCTCTCAACCTCAACAACAGGTGATGTTGAATAAATCATTCTCCAAAACTTTCCACAAAAAGAAAAAAGAGAACCTTGCGACTTCCTACTGCATCAACGTAGAAGAAGTTGACAATTCTAAGAAGAGTGAACAAAGGACTTCCGTCTTTGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCATAGAATGAGTATGGTCGCGACAGAGGAAGAAAATCAATGCTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAATCGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGAAGAAGTAAACAGTGACACGAAGCTTCATAGTAGCATCCCGTCGCGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCCTGCAAATGAAGGATTTGATCAAGACCATGACAAAGATAAGAGCTTTTAAATGTAAAAGCTCTTTATCGCAAGAGCCTAAACTGCATGATGCTTCTAGCCCACACGAGCTTAAAAGGTGAGTGCAAAAAAATTTTGAACTACGTTATGACTTGATCCCTTTTCTTTAAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTGCAAACAAAAAAAAGTGCAACAAACATTGAAACACGACAATACAAATTGAAGAAGTTAATCACTACTGGGGGCAACACAACAAATTGAAGTTGTGCACCGTTATGAATATGAAGCTACAAGTTGGATGAATAAAAGAAGATTTCATTCCTCCAAATTCAATGCCTCGCTAGCCTCAAGTTCGGTGTTTCACTCACCCTAAGTTCGTGCATTCCTTCTCTTCAAGTTCGAAGGTTCTCACGTGTTTCGTTGCAGTTCCTTTTCTCCAAGTACGAAGGTGCTCCTTCTCCAAGTTCGAAGGCTCTTACATTGCTGCGATGCAGTTCCTTCTCTCTAAGTTCAAAGGTTCTCACGCGTTCCGCTACAGTTCCTTCTCTCCAAGTACGAAGGTTCTCTCCTCCAAGTCGGAAGGTTCTCACGTTGCTTCGTCTTAGTTCCTTCTCTCCAAGTACGAAGGTTCTCTCCTCCAAGTCGAAGGTTCTCTCACGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTTTCATGCGCTTCGCTGCAGTTTCTTCTCCCTAAGTTTGAAGGTTCTCACGCGCTTTGCTGCAGTTCCCTCCTCCCTAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTACCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCACGCGCTGCGCTTCGTTGCAGTTCCTTCCTCTAAGTTCGAAGGTTCTCATGCGCTTCGCTGCGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGTGTTTCGCTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCTCTTCTCTCCGCTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCCTTCTCCAAGTTCAAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCCTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGGCCTCGTTCCACTCCATCTTCAAATGTTGGCAGTTGACGGCGTCCACTGCGCTTCATCTTCAAATGTTGGCAGTTGA
mRNA sequence
ATGTCATTCAAGACTTCTTCGATGGTCGCTGTCGAGATCAAGTCTTACATGGGTTCAACTGCCCATTGTTGCTTCAATGAACTGAGGTTGCAAGAAGATAAAGCTTCTATCATTGCAAGCGAAGAAACAACCTTGCAGGGGGCATATACCAATGACAAGTTTCTTGTTAAGTATAACCCTCTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGACTGAGATGCAAGAACACATCAACAACTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCGTAAAAAATCACGACAAAGGAAAGTCTATAGTGCAAGATGATCATCCACAATGTTCTGTTTTGGTCGCTTCACTATCCATCCAACAGCTCGAAGATATGATCACAAACTGTATCAGATCTCCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTCAATTCTAAAGCTGGCTATGGAAAGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAGCAAACATCAAAGAAAGAAGGATCCTAAGAAACTTCAACCCAAGAGAAAGAGAAGTAAAAAGTTCTCTCAACCTCAACAACAGGTGATGTTGAATAAATCATTCTCCAAAACTTTCCACAAAAAGAAAAAAGAGAACCTTGCGACTTCCTACTGCATCAACGTAGAAGAAGTTGACAATTCTAAGAAGAGTGAACAAAGGACTTCCGTCTTTGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCATAGAATGAGTATGGTCGCGACAGAGGAAGAAAATCAATGCTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAATCGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGAAGAAGTAAACAGTGACACGAAGCTTCATAGTAGCATCCCGTCGCGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCCTTTTCTCCAAGTACGAAGGTGCTCCTTCTCCAAGTTCGAAGGCTCTTACATTGCTGCGATGCAGTTCCTTCTCTCTAAGTTCAAAGGTTCTCACGCGTTCCGCTACAGTTCCTTCTCTCCAAGTACGAAGGTTCTCTCCTCCAAGTCGGAAGGTTCTCACGTTGCTTCGTCTTAGTTCCTTCTCTCCAAGTACGAAGGTTCTCTCCTCCAAGTCGAAGGTTCTCTCACGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTTTCATGCGCTTCGCTGCAGTTTCTTCTCCCTAAGTTTGAAGGTTCTCACGCGCTTTGCTGCAGTTCCCTCCTCCCTAAGTTCGAAGTTCCTTCCTCTAAGTTCGAAGGTTCTCATGCGCTTCGCTGCGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGTGTTTCGCTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCTCTTCTCTCCGCTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCCTTCTCCAAGTTCAAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCCTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGGCCTCGTTCCACTCCATCTTCAAATGTTGGCAGTTGACGGCGTCCACTGCGCTTCATCTTCAAATGTTGGCAGTTGA
Coding sequence (CDS)
ATGTCATTCAAGACTTCTTCGATGGTCGCTGTCGAGATCAAGTCTTACATGGGTTCAACTGCCCATTGTTGCTTCAATGAACTGAGGTTGCAAGAAGATAAAGCTTCTATCATTGCAAGCGAAGAAACAACCTTGCAGGGGGCATATACCAATGACAAGTTTCTTGTTAAGTATAACCCTCTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGACTGAGATGCAAGAACACATCAACAACTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCGTAAAAAATCACGACAAAGGAAAGTCTATAGTGCAAGATGATCATCCACAATGTTCTGTTTTGGTCGCTTCACTATCCATCCAACAGCTCGAAGATATGATCACAAACTGTATCAGATCTCCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTCAATTCTAAAGCTGGCTATGGAAAGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAGCAAACATCAAAGAAAGAAGGATCCTAAGAAACTTCAACCCAAGAGAAAGAGAAGTAAAAAGTTCTCTCAACCTCAACAACAGGTGATGTTGAATAAATCATTCTCCAAAACTTTCCACAAAAAGAAAAAAGAGAACCTTGCGACTTCCTACTGCATCAACGTAGAAGAAGTTGACAATTCTAAGAAGAGTGAACAAAGGACTTCCGTCTTTGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCATAGAATGAGTATGGTCGCGACAGAGGAAGAAAATCAATGCTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAATCGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGAAGAAGTAAACAGTGACACGAAGCTTCATAGTAGCATCCCGTCGCGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCCTTTTCTCCAAGTACGAAGGTGCTCCTTCTCCAAGTTCGAAGGCTCTTACATTGCTGCGATGCAGTTCCTTCTCTCTAAGTTCAAAGGTTCTCACGCGTTCCGCTACAGTTCCTTCTCTCCAAGTACGAAGGTTCTCTCCTCCAAGTCGGAAGGTTCTCACGTTGCTTCGTCTTAGTTCCTTCTCTCCAAGTACGAAGGTTCTCTCCTCCAAGTCGAAGGTTCTCTCACGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTTTCATGCGCTTCGCTGCAGTTTCTTCTCCCTAAGTTTGAAGGTTCTCACGCGCTTTGCTGCAGTTCCCTCCTCCCTAAGTTCGAAGTTCCTTCCTCTAAGTTCGAAGGTTCTCATGCGCTTCGCTGCGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGTGTTTCGCTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCTCTTCTCTCCGCTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCCTTCTCCAAGTTCAAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCCTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGGCCTCGTTCCACTCCATCTTCAAATGTTGGCAGTTGACGGCGTCCACTGCGCTTCATCTTCAAATGTTGGCAGTTGA
Protein sequence
MSFKTSSMVAVEIKSYMGSTAHCCFNELRLQEDKASIIASEETTLQGAYTNDKFLVKYNPLFEPDSDVVTVMMTETRTMEERMTEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHDKGKSIVQDDHPQCSVLVASLSIQQLEDMITNCIRSPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDSILKLAMERKIELDLDEVAQSNLATIKEKSKHQRKKDPKKLQPKRKRSKKFSQPQQQVMLNKSFSKTFHKKKKENLATSYCINVEEVDNSKKSEQRTSVFDRIKPPTTRPSVFHRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTIDQPKRKMNNLELKLFEEVNSDTKLHSSIPSRMKRKFSVLINTEGSLKFLFSKYEGAPSPSSKALTLLRCSSFSLSSKVLTRSATVPSLQVRRFSPPSRKVLTLLRLSSFSPSTKVLSSKSKVLSRCFAAVPSSKFKGFHALRCSFFSLSLKVLTRFAAVPSSLSSKFLPLSSKVLMRFAAQFLPPSSKVLMRFAAQFLPPSSKVLMCFAATFLQVRRFSHALLQFLPPSSKVPSRASLAPSPSSKALLSAAPSPSSKALLSTAPSPSSKALLSTTPSPSSKALLSTAPSPSSKVLLSTPPFEGSPLRFSFSKFEGSPLLLFKCLAAVDGLVPLHLQMLAVDGVHCASSSNVGS
Homology
BLAST of Lag0032320 vs. NCBI nr
Match:
TYK09793.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 239.2 bits (609), Expect = 1.1e-58
Identity = 191/546 (34.98%), Postives = 253/546 (46.34%), Query Frame = 0
Query: 34 KASIIASEETTLQGAYTNDKFLVKYNPLFE--PDSDVVTVMMTETRTMEERMTEMQEHIN 93
K I+ E + Y++ + P E P ++++VM+T T E RMTE+++ +N
Sbjct: 51 KGGIVIKENPAIDEHYSSSQ------PSSEEMPHPNIMSVMVTNVDTSENRMTELEKKVN 110
Query: 94 NLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHDKGKSIVQDDHPQCSVLVASLSI 153
LMK +EE+D +I LK+ IE+ AESS VKN DKGK+++Q+ Q S + SLS+
Sbjct: 111 MLMKVVEERDYEIAFLKNHIESHDAAESSHKHTVKNTDKGKAVMQESQSQNSTSIESLSV 170
Query: 154 QQLEDMITNCIRS----------------------------------------------- 213
QQL++MI N I++
Sbjct: 171 QQLQEMIANSIKTQYGGPAQTFSLYSKPYMKRIDNLRMPNGYQPPKFQQFDGKGNPKQHV 230
Query: 214 -----------------------------PEEMEKVDDPKYCKYHRVIGHPVERCFVLKD 273
PE+ EKVDDP YCKYHRVI HPVE+CFVLK+
Sbjct: 231 AHFIETCETADMLEQLLENQLIQLPECKRPEQAEKVDDPNYCKYHRVISHPVEKCFVLKE 290
Query: 274 SILKLAMERKIELDLDEVAQSN-------------------------------------- 333
ILKLA E+KIELD+DEVAQ+N
Sbjct: 291 LILKLAREKKIELDIDEVAQTNHVAIEMTSNVPPLTQLDDQRKSLIQFGTFAPILVLFQQ 350
Query: 334 -LATIKEKSKHQRKKD---------------PKKLQ-----------------PKRKRSK 393
TI ++K KD P +Q K R+K
Sbjct: 351 RTVTINSQNKEAHGKDDGEGWITVTRQKGRQPNSIQKESRFHQKYAKGSISYKKKGSRNK 410
Query: 394 K-------------FSQPQQQVMLNKSFSKTF---HKKKKENLATSYCINVEEVD----- 405
K F Q ++ + L + ++F H ++ + + ++ EVD
Sbjct: 411 KMWNPKPIKGKDEDFLQLRRSITLAEFLPRSFLEGHPEEILEVTACHAASIVEVDNNYGS 470
BLAST of Lag0032320 vs. NCBI nr
Match:
TYK15207.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 214.5 bits (545), Expect = 2.9e-51
Identity = 161/440 (36.59%), Postives = 227/440 (51.59%), Query Frame = 0
Query: 69 VTVMMTETRTMEERMTEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNH 128
+++M T+ T E+R+ E+++ IN LMK +EE+D +I LK+ IE++ AESS + N
Sbjct: 1 MSIMATDVDTSEDRIVEIEKKINMLMKVVEERDYEITSLKNYIESRDAAESSHKHTINND 60
Query: 129 DKGKSI------------------------VQDDHPQCSV-------LVASLSIQQ---- 188
DKGK + +Q D C ++ +I+Q
Sbjct: 61 DKGKFVRSLKENSFGWYTDLEPESIYSWEQLQRDFLNCFYSTRHIVSMMELTNIRQPKEK 120
Query: 189 -----------------LEDMITNCI------RSPEEMEKVDDPKYCKYHRVIGHPVERC 248
LE ++ N + + P++ KVDDP YCKYHRVI HPVE+C
Sbjct: 121 QVIDYINRWRALSLDYMLEQLLENQLIQLPKCKRPKQARKVDDPNYCKYHRVISHPVEKC 180
Query: 249 FVLKDSILKLAMERKIELDLDEVAQSNLATIKEKSKHQRKKDPKKLQPKRKRSKKFSQPQ 308
F+LK+ ILKLA E+KIELD+ EVAQ+N ++ S P
Sbjct: 181 FLLKEMILKLAREKKIELDIYEVAQTNHVAVE---------------------MTLSVPP 240
Query: 309 QQVMLNKSFSKTFHKKKKENLATSYCINV----------EEVDNSKKSEQRTSVFDRIKP 368
LN H ++ + + + + EEVDNS + +QRT VFDRIKP
Sbjct: 241 STHFLND------HLEEVSEVTACHAVGIVEVDNNYASSEEVDNSNEVKQRTYVFDRIKP 300
Query: 369 PTTRPSVFHRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTIDQ 428
TR S+F R SM EE+NQC MSTST+ SAF+RLS+STSK+ R TS FDRLK+T DQ
Sbjct: 301 SITRSSIFQRWSMATKEEKNQCPMSTSTQTSAFKRLSISTSKRDRPLTSDFDRLKMTNDQ 360
Query: 429 PKRKMNNLELKLFEEVNSDTKLHSSIPSRMKRKFSVLINTE-GSLKFLFSKYEGAPSPSS 440
+R+M L+ K F E N+D K+++ +PS MKRK V INTE GS+ + S+
Sbjct: 361 QQREMKTLKAKPFHEENNDNKINNRVPSHMKRKL-VDINTEVGSIDIFIFSHVLQLGGST 412
BLAST of Lag0032320 vs. NCBI nr
Match:
KAA0066166.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 213.4 bits (542), Expect = 6.4e-51
Identity = 161/440 (36.59%), Postives = 226/440 (51.36%), Query Frame = 0
Query: 69 VTVMMTETRTMEERMTEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNH 128
+++M T+ T E+R+ E+++ IN LMK +EE+D +I LK+ IE++ AESS + N
Sbjct: 1 MSIMATDVDTSEDRIVEIEKKINMLMKVVEERDYEITSLKNYIESRDAAESSHKHTINND 60
Query: 129 DKGKSI------------------------VQDDHPQCSV-------LVASLSIQQ---- 188
DKGK + +Q D C ++ +I+Q
Sbjct: 61 DKGKFVRSLKENSFGWYTDLEPESIYSWEQLQRDFLNCFYSTRHIVSMMELTNIRQPKEK 120
Query: 189 -----------------LEDMITNCI------RSPEEMEKVDDPKYCKYHRVIGHPVERC 248
LE ++ N + + P++ KVDDP YCKYHRVI HPVE+C
Sbjct: 121 QVIDYINRWRALSLDYMLEQLLENQLIQLPKCKRPKQARKVDDPNYCKYHRVISHPVEKC 180
Query: 249 FVLKDSILKLAMERKIELDLDEVAQSNLATIKEKSKHQRKKDPKKLQPKRKRSKKFSQPQ 308
F+LK ILKLA E+KIELD+ EVAQ+N ++ S P
Sbjct: 181 FLLKKMILKLAREKKIELDIYEVAQTNHVAVE---------------------MTLSVPP 240
Query: 309 QQVMLNKSFSKTFHKKKKENLATSYCINV----------EEVDNSKKSEQRTSVFDRIKP 368
LN H ++ + + + + EEVDNS + +QRT VFDRIKP
Sbjct: 241 STHFLND------HLEEVSEVTACHAVGIVEVDNNYASSEEVDNSNEVKQRTYVFDRIKP 300
Query: 369 PTTRPSVFHRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTIDQ 428
TR S+F R SM EE+NQC MSTST+ SAF+RLS+STSK+ R TS FDRLK+T DQ
Sbjct: 301 SITRSSIFQRWSMATKEEKNQCPMSTSTQTSAFKRLSISTSKRDRPLTSDFDRLKMTNDQ 360
Query: 429 PKRKMNNLELKLFEEVNSDTKLHSSIPSRMKRKFSVLINTE-GSLKFLFSKYEGAPSPSS 440
+R+M L+ K F E N+D K+++ +PS MKRK V INTE GS+ + S+
Sbjct: 361 QQREMKTLKAKPFHEENNDNKINNRVPSHMKRKL-VDINTEVGSIDIFIFSHVLQLGGST 412
BLAST of Lag0032320 vs. NCBI nr
Match:
KAA0062063.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 208.4 bits (529), Expect = 2.1e-49
Identity = 177/534 (33.15%), Postives = 242/534 (45.32%), Query Frame = 0
Query: 55 LVKYNPLFEPD-----------SDVVTVMMTETRTMEERMTEMQEHINNLMKAIEEKDSQ 114
++K NPL+E D +V++V+M + T E EM+ IN L+K +EE+D +
Sbjct: 60 VIKENPLYESDFASSKSKKEAHPNVMSVIMADI-TTEATKAEMERKINLLVKVVEERDHK 119
Query: 115 IEQLKSQIENQHIAESSQTQVVKNHDKGKSIVQDDHPQCSVLVASLSIQQLE-------- 174
I + Q+ ESS+T +VK DKGK+++Q++ Q S+ +ASLS+QQL+
Sbjct: 120 ITAFRDQMWTCESTESSKTPLVKADDKGKAVLQENQMQHSISIASLSVQQLKGNPKQHIA 179
Query: 175 --------------------------------------------------DMITNCIR-- 234
+ + N I
Sbjct: 180 HFVETCENAGSRGDQLVSWEQLEIEFLNRFYSTRRVVSMMELKNIKQRKGEPVINYINRW 239
Query: 235 --------------------SPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDSILKLAME 294
+ E++ KVDDP YCK+ R+I HPVE+CFVLK+ ILKLA E
Sbjct: 240 RALSMDYKDKLTELFVVEMCTQEQVGKVDDPNYCKHQRIISHPVEKCFVLKELILKLARE 299
Query: 295 RKIELDLDEVAQSNLATIK----------------------------------------- 354
KIELD+DEV Q+N IK
Sbjct: 300 NKIELDIDEVTQTNHVAIKMTSSVLSSVFFYDQRESLIQFETFKPILVRFQQKIMMTNSQ 359
Query: 355 -------------------------------------------EKSKHQRKKDPKKLQPK 400
K+K +R K K +P
Sbjct: 360 YKEEPIKDDGKEWIVVARQKEKQTNFIQTKSHFHQKHSKGSISHKNKGKRNKKMSKSKPI 419
BLAST of Lag0032320 vs. NCBI nr
Match:
KAA0050736.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ95700.1 retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 206.5 bits (524), Expect = 7.9e-49
Identity = 140/339 (41.30%), Postives = 180/339 (53.10%), Query Frame = 0
Query: 163 RSPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDSILKLAMERKIELDLDEVAQSNL---- 222
+ PE++EKVDDP YCKYHR+I HPVE+CFVLK+ ILKLA E KI+LD+DEVAQ+N
Sbjct: 157 KRPEQVEKVDDPNYCKYHRIISHPVEKCFVLKELILKLARENKIKLDIDEVAQTNYVAVN 216
Query: 223 ------------------------------------------------------------ 282
Sbjct: 217 MTSSVSSSILLYDQRESLIQFGTFEPILVRFQQKIMTSNFQNKEEPIEDEGEEWIVVAHK 276
Query: 283 --------------------ATIKEKSKHQRKKDPKKLQPKRKRSKKFSQPQQQVMLNKS 342
I K K +R K K +P +++ +KF QP++ + L +
Sbjct: 277 KERRTSSVQTKSHFHQKHSKGNISHKKKGRRNKKMWKPKPIKEKDEKFLQPRRSITLAEF 336
Query: 343 FSKTFHKKKKENLA------TSYCINV-------EEVDNSKKSEQRTSVFDRIKPPTTRP 402
F ++F + E + T+ + V EEVDNS + +QRTSVFDRIKP TTR
Sbjct: 337 FPRSFLEDHSEEILEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRS 396
Query: 403 SVFHRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTIDQPKRKM 405
SVF R+SM EEENQC MST TR SAF+RLS+S SKK R STS FDRLK+T DQ +R+M
Sbjct: 397 SVFQRLSMATKEEENQCPMSTYTRTSAFKRLSISRSKKHRPSTSAFDRLKMTNDQQQREM 456
BLAST of Lag0032320 vs. ExPASy TrEMBL
Match:
A0A5D3CD55 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00850 PE=4 SV=1)
HSP 1 Score: 239.2 bits (609), Expect = 5.3e-59
Identity = 191/546 (34.98%), Postives = 253/546 (46.34%), Query Frame = 0
Query: 34 KASIIASEETTLQGAYTNDKFLVKYNPLFE--PDSDVVTVMMTETRTMEERMTEMQEHIN 93
K I+ E + Y++ + P E P ++++VM+T T E RMTE+++ +N
Sbjct: 51 KGGIVIKENPAIDEHYSSSQ------PSSEEMPHPNIMSVMVTNVDTSENRMTELEKKVN 110
Query: 94 NLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHDKGKSIVQDDHPQCSVLVASLSI 153
LMK +EE+D +I LK+ IE+ AESS VKN DKGK+++Q+ Q S + SLS+
Sbjct: 111 MLMKVVEERDYEIAFLKNHIESHDAAESSHKHTVKNTDKGKAVMQESQSQNSTSIESLSV 170
Query: 154 QQLEDMITNCIRS----------------------------------------------- 213
QQL++MI N I++
Sbjct: 171 QQLQEMIANSIKTQYGGPAQTFSLYSKPYMKRIDNLRMPNGYQPPKFQQFDGKGNPKQHV 230
Query: 214 -----------------------------PEEMEKVDDPKYCKYHRVIGHPVERCFVLKD 273
PE+ EKVDDP YCKYHRVI HPVE+CFVLK+
Sbjct: 231 AHFIETCETADMLEQLLENQLIQLPECKRPEQAEKVDDPNYCKYHRVISHPVEKCFVLKE 290
Query: 274 SILKLAMERKIELDLDEVAQSN-------------------------------------- 333
ILKLA E+KIELD+DEVAQ+N
Sbjct: 291 LILKLAREKKIELDIDEVAQTNHVAIEMTSNVPPLTQLDDQRKSLIQFGTFAPILVLFQQ 350
Query: 334 -LATIKEKSKHQRKKD---------------PKKLQ-----------------PKRKRSK 393
TI ++K KD P +Q K R+K
Sbjct: 351 RTVTINSQNKEAHGKDDGEGWITVTRQKGRQPNSIQKESRFHQKYAKGSISYKKKGSRNK 410
Query: 394 K-------------FSQPQQQVMLNKSFSKTF---HKKKKENLATSYCINVEEVD----- 405
K F Q ++ + L + ++F H ++ + + ++ EVD
Sbjct: 411 KMWNPKPIKGKDEDFLQLRRSITLAEFLPRSFLEGHPEEILEVTACHAASIVEVDNNYGS 470
BLAST of Lag0032320 vs. ExPASy TrEMBL
Match:
A0A5D3CTF5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00840 PE=4 SV=1)
HSP 1 Score: 214.5 bits (545), Expect = 1.4e-51
Identity = 161/440 (36.59%), Postives = 227/440 (51.59%), Query Frame = 0
Query: 69 VTVMMTETRTMEERMTEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNH 128
+++M T+ T E+R+ E+++ IN LMK +EE+D +I LK+ IE++ AESS + N
Sbjct: 1 MSIMATDVDTSEDRIVEIEKKINMLMKVVEERDYEITSLKNYIESRDAAESSHKHTINND 60
Query: 129 DKGKSI------------------------VQDDHPQCSV-------LVASLSIQQ---- 188
DKGK + +Q D C ++ +I+Q
Sbjct: 61 DKGKFVRSLKENSFGWYTDLEPESIYSWEQLQRDFLNCFYSTRHIVSMMELTNIRQPKEK 120
Query: 189 -----------------LEDMITNCI------RSPEEMEKVDDPKYCKYHRVIGHPVERC 248
LE ++ N + + P++ KVDDP YCKYHRVI HPVE+C
Sbjct: 121 QVIDYINRWRALSLDYMLEQLLENQLIQLPKCKRPKQARKVDDPNYCKYHRVISHPVEKC 180
Query: 249 FVLKDSILKLAMERKIELDLDEVAQSNLATIKEKSKHQRKKDPKKLQPKRKRSKKFSQPQ 308
F+LK+ ILKLA E+KIELD+ EVAQ+N ++ S P
Sbjct: 181 FLLKEMILKLAREKKIELDIYEVAQTNHVAVE---------------------MTLSVPP 240
Query: 309 QQVMLNKSFSKTFHKKKKENLATSYCINV----------EEVDNSKKSEQRTSVFDRIKP 368
LN H ++ + + + + EEVDNS + +QRT VFDRIKP
Sbjct: 241 STHFLND------HLEEVSEVTACHAVGIVEVDNNYASSEEVDNSNEVKQRTYVFDRIKP 300
Query: 369 PTTRPSVFHRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTIDQ 428
TR S+F R SM EE+NQC MSTST+ SAF+RLS+STSK+ R TS FDRLK+T DQ
Sbjct: 301 SITRSSIFQRWSMATKEEKNQCPMSTSTQTSAFKRLSISTSKRDRPLTSDFDRLKMTNDQ 360
Query: 429 PKRKMNNLELKLFEEVNSDTKLHSSIPSRMKRKFSVLINTE-GSLKFLFSKYEGAPSPSS 440
+R+M L+ K F E N+D K+++ +PS MKRK V INTE GS+ + S+
Sbjct: 361 QQREMKTLKAKPFHEENNDNKINNRVPSHMKRKL-VDINTEVGSIDIFIFSHVLQLGGST 412
BLAST of Lag0032320 vs. ExPASy TrEMBL
Match:
A0A5A7VII4 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G001730 PE=4 SV=1)
HSP 1 Score: 213.4 bits (542), Expect = 3.1e-51
Identity = 161/440 (36.59%), Postives = 226/440 (51.36%), Query Frame = 0
Query: 69 VTVMMTETRTMEERMTEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNH 128
+++M T+ T E+R+ E+++ IN LMK +EE+D +I LK+ IE++ AESS + N
Sbjct: 1 MSIMATDVDTSEDRIVEIEKKINMLMKVVEERDYEITSLKNYIESRDAAESSHKHTINND 60
Query: 129 DKGKSI------------------------VQDDHPQCSV-------LVASLSIQQ---- 188
DKGK + +Q D C ++ +I+Q
Sbjct: 61 DKGKFVRSLKENSFGWYTDLEPESIYSWEQLQRDFLNCFYSTRHIVSMMELTNIRQPKEK 120
Query: 189 -----------------LEDMITNCI------RSPEEMEKVDDPKYCKYHRVIGHPVERC 248
LE ++ N + + P++ KVDDP YCKYHRVI HPVE+C
Sbjct: 121 QVIDYINRWRALSLDYMLEQLLENQLIQLPKCKRPKQARKVDDPNYCKYHRVISHPVEKC 180
Query: 249 FVLKDSILKLAMERKIELDLDEVAQSNLATIKEKSKHQRKKDPKKLQPKRKRSKKFSQPQ 308
F+LK ILKLA E+KIELD+ EVAQ+N ++ S P
Sbjct: 181 FLLKKMILKLAREKKIELDIYEVAQTNHVAVE---------------------MTLSVPP 240
Query: 309 QQVMLNKSFSKTFHKKKKENLATSYCINV----------EEVDNSKKSEQRTSVFDRIKP 368
LN H ++ + + + + EEVDNS + +QRT VFDRIKP
Sbjct: 241 STHFLND------HLEEVSEVTACHAVGIVEVDNNYASSEEVDNSNEVKQRTYVFDRIKP 300
Query: 369 PTTRPSVFHRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTIDQ 428
TR S+F R SM EE+NQC MSTST+ SAF+RLS+STSK+ R TS FDRLK+T DQ
Sbjct: 301 SITRSSIFQRWSMATKEEKNQCPMSTSTQTSAFKRLSISTSKRDRPLTSDFDRLKMTNDQ 360
Query: 429 PKRKMNNLELKLFEEVNSDTKLHSSIPSRMKRKFSVLINTE-GSLKFLFSKYEGAPSPSS 440
+R+M L+ K F E N+D K+++ +PS MKRK V INTE GS+ + S+
Sbjct: 361 QQREMKTLKAKPFHEENNDNKINNRVPSHMKRKL-VDINTEVGSIDIFIFSHVLQLGGST 412
BLAST of Lag0032320 vs. ExPASy TrEMBL
Match:
A0A5A7V1P3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G004060 PE=4 SV=1)
HSP 1 Score: 208.4 bits (529), Expect = 1.0e-49
Identity = 177/534 (33.15%), Postives = 242/534 (45.32%), Query Frame = 0
Query: 55 LVKYNPLFEPD-----------SDVVTVMMTETRTMEERMTEMQEHINNLMKAIEEKDSQ 114
++K NPL+E D +V++V+M + T E EM+ IN L+K +EE+D +
Sbjct: 60 VIKENPLYESDFASSKSKKEAHPNVMSVIMADI-TTEATKAEMERKINLLVKVVEERDHK 119
Query: 115 IEQLKSQIENQHIAESSQTQVVKNHDKGKSIVQDDHPQCSVLVASLSIQQLE-------- 174
I + Q+ ESS+T +VK DKGK+++Q++ Q S+ +ASLS+QQL+
Sbjct: 120 ITAFRDQMWTCESTESSKTPLVKADDKGKAVLQENQMQHSISIASLSVQQLKGNPKQHIA 179
Query: 175 --------------------------------------------------DMITNCIR-- 234
+ + N I
Sbjct: 180 HFVETCENAGSRGDQLVSWEQLEIEFLNRFYSTRRVVSMMELKNIKQRKGEPVINYINRW 239
Query: 235 --------------------SPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDSILKLAME 294
+ E++ KVDDP YCK+ R+I HPVE+CFVLK+ ILKLA E
Sbjct: 240 RALSMDYKDKLTELFVVEMCTQEQVGKVDDPNYCKHQRIISHPVEKCFVLKELILKLARE 299
Query: 295 RKIELDLDEVAQSNLATIK----------------------------------------- 354
KIELD+DEV Q+N IK
Sbjct: 300 NKIELDIDEVTQTNHVAIKMTSSVLSSVFFYDQRESLIQFETFKPILVRFQQKIMMTNSQ 359
Query: 355 -------------------------------------------EKSKHQRKKDPKKLQPK 400
K+K +R K K +P
Sbjct: 360 YKEEPIKDDGKEWIVVARQKEKQTNFIQTKSHFHQKHSKGSISHKNKGKRNKKMSKSKPI 419
BLAST of Lag0032320 vs. ExPASy TrEMBL
Match:
A0A5A7U974 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00280 PE=4 SV=1)
HSP 1 Score: 206.5 bits (524), Expect = 3.8e-49
Identity = 140/339 (41.30%), Postives = 180/339 (53.10%), Query Frame = 0
Query: 163 RSPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDSILKLAMERKIELDLDEVAQSNL---- 222
+ PE++EKVDDP YCKYHR+I HPVE+CFVLK+ ILKLA E KI+LD+DEVAQ+N
Sbjct: 157 KRPEQVEKVDDPNYCKYHRIISHPVEKCFVLKELILKLARENKIKLDIDEVAQTNYVAVN 216
Query: 223 ------------------------------------------------------------ 282
Sbjct: 217 MTSSVSSSILLYDQRESLIQFGTFEPILVRFQQKIMTSNFQNKEEPIEDEGEEWIVVAHK 276
Query: 283 --------------------ATIKEKSKHQRKKDPKKLQPKRKRSKKFSQPQQQVMLNKS 342
I K K +R K K +P +++ +KF QP++ + L +
Sbjct: 277 KERRTSSVQTKSHFHQKHSKGNISHKKKGRRNKKMWKPKPIKEKDEKFLQPRRSITLAEF 336
Query: 343 FSKTFHKKKKENLA------TSYCINV-------EEVDNSKKSEQRTSVFDRIKPPTTRP 402
F ++F + E + T+ + V EEVDNS + +QRTSVFDRIKP TTR
Sbjct: 337 FPRSFLEDHSEEILEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRS 396
Query: 403 SVFHRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTIDQPKRKM 405
SVF R+SM EEENQC MST TR SAF+RLS+S SKK R STS FDRLK+T DQ +R+M
Sbjct: 397 SVFQRLSMATKEEENQCPMSTYTRTSAFKRLSISRSKKHRPSTSAFDRLKMTNDQQQREM 456
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
TYK09793.1 | 1.1e-58 | 34.98 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK15207.1 | 2.9e-51 | 36.59 | Retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
KAA0066166.1 | 6.4e-51 | 36.59 | Retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
KAA0062063.1 | 2.1e-49 | 33.15 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0050736.1 | 7.9e-49 | 41.30 | retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ95700.1 retrotranspos... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3CD55 | 5.3e-59 | 34.98 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5D3CTF5 | 1.4e-51 | 36.59 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
A0A5A7VII4 | 3.1e-51 | 36.59 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
A0A5A7V1P3 | 1.0e-49 | 33.15 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5A7U974 | 3.8e-49 | 41.30 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
Match Name | E-value | Identity | Description | |