Lag0032320 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032320
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotransposon gag protein
Locationchr11: 30393253 .. 30395962 (-)
RNA-Seq ExpressionLag0032320
SyntenyLag0032320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATTCAAGACTTCTTCGATGGTCGCTGTCGAGATCAAGTCTTACATGGGTTCAACTGCCCATTGTTGCTTCAATGAACTGAGGTTGCAAGAAGATAAAGCTTCTATCATTGCAAGCGAAGAAACAACCTTGCAGGGGGCATATACCAATGACAAGTTTCTTGTTAAGTATAACCCTCTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGACTGAGATGCAAGAACACATCAACAACTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCGTAAAAAATCACGACAAAGGAAAGTCTATAGTGCAAGATGATCATCCACAATGTTCTGTTTTGGTCGCTTCACTATCCATCCAACAGCTCGAAGATATGATCACAAACTGTATCAGATCTCCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTCAATTCTAAAGCTGGCTATGGAAAGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAGCAAACATCAAAGAAAGAAGGATCCTAAGAAACTTCAACCCAAGAGAAAGAGAAGTAAAAAGTTCTCTCAACCTCAACAACAGGTGATGTTGAATAAATCATTCTCCAAAACTTTCCACAAAAAGAAAAAAGAGAACCTTGCGACTTCCTACTGCATCAACGTAGAAGAAGTTGACAATTCTAAGAAGAGTGAACAAAGGACTTCCGTCTTTGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCATAGAATGAGTATGGTCGCGACAGAGGAAGAAAATCAATGCTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAATCGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGAAGAAGTAAACAGTGACACGAAGCTTCATAGTAGCATCCCGTCGCGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCCTGCAAATGAAGGATTTGATCAAGACCATGACAAAGATAAGAGCTTTTAAATGTAAAAGCTCTTTATCGCAAGAGCCTAAACTGCATGATGCTTCTAGCCCACACGAGCTTAAAAGGTGAGTGCAAAAAAATTTTGAACTACGTTATGACTTGATCCCTTTTCTTTAAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTGCAAACAAAAAAAAGTGCAACAAACATTGAAACACGACAATACAAATTGAAGAAGTTAATCACTACTGGGGGCAACACAACAAATTGAAGTTGTGCACCGTTATGAATATGAAGCTACAAGTTGGATGAATAAAAGAAGATTTCATTCCTCCAAATTCAATGCCTCGCTAGCCTCAAGTTCGGTGTTTCACTCACCCTAAGTTCGTGCATTCCTTCTCTTCAAGTTCGAAGGTTCTCACGTGTTTCGTTGCAGTTCCTTTTCTCCAAGTACGAAGGTGCTCCTTCTCCAAGTTCGAAGGCTCTTACATTGCTGCGATGCAGTTCCTTCTCTCTAAGTTCAAAGGTTCTCACGCGTTCCGCTACAGTTCCTTCTCTCCAAGTACGAAGGTTCTCTCCTCCAAGTCGGAAGGTTCTCACGTTGCTTCGTCTTAGTTCCTTCTCTCCAAGTACGAAGGTTCTCTCCTCCAAGTCGAAGGTTCTCTCACGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTTTCATGCGCTTCGCTGCAGTTTCTTCTCCCTAAGTTTGAAGGTTCTCACGCGCTTTGCTGCAGTTCCCTCCTCCCTAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTACCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCACGCGCTGCGCTTCGTTGCAGTTCCTTCCTCTAAGTTCGAAGGTTCTCATGCGCTTCGCTGCGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGTGTTTCGCTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCTCTTCTCTCCGCTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCCTTCTCCAAGTTCAAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCCTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGGCCTCGTTCCACTCCATCTTCAAATGTTGGCAGTTGACGGCGTCCACTGCGCTTCATCTTCAAATGTTGGCAGTTGA

mRNA sequence

ATGTCATTCAAGACTTCTTCGATGGTCGCTGTCGAGATCAAGTCTTACATGGGTTCAACTGCCCATTGTTGCTTCAATGAACTGAGGTTGCAAGAAGATAAAGCTTCTATCATTGCAAGCGAAGAAACAACCTTGCAGGGGGCATATACCAATGACAAGTTTCTTGTTAAGTATAACCCTCTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGACTGAGATGCAAGAACACATCAACAACTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCGTAAAAAATCACGACAAAGGAAAGTCTATAGTGCAAGATGATCATCCACAATGTTCTGTTTTGGTCGCTTCACTATCCATCCAACAGCTCGAAGATATGATCACAAACTGTATCAGATCTCCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTCAATTCTAAAGCTGGCTATGGAAAGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAGCAAACATCAAAGAAAGAAGGATCCTAAGAAACTTCAACCCAAGAGAAAGAGAAGTAAAAAGTTCTCTCAACCTCAACAACAGGTGATGTTGAATAAATCATTCTCCAAAACTTTCCACAAAAAGAAAAAAGAGAACCTTGCGACTTCCTACTGCATCAACGTAGAAGAAGTTGACAATTCTAAGAAGAGTGAACAAAGGACTTCCGTCTTTGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCATAGAATGAGTATGGTCGCGACAGAGGAAGAAAATCAATGCTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAATCGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGAAGAAGTAAACAGTGACACGAAGCTTCATAGTAGCATCCCGTCGCGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCCTTTTCTCCAAGTACGAAGGTGCTCCTTCTCCAAGTTCGAAGGCTCTTACATTGCTGCGATGCAGTTCCTTCTCTCTAAGTTCAAAGGTTCTCACGCGTTCCGCTACAGTTCCTTCTCTCCAAGTACGAAGGTTCTCTCCTCCAAGTCGGAAGGTTCTCACGTTGCTTCGTCTTAGTTCCTTCTCTCCAAGTACGAAGGTTCTCTCCTCCAAGTCGAAGGTTCTCTCACGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTTTCATGCGCTTCGCTGCAGTTTCTTCTCCCTAAGTTTGAAGGTTCTCACGCGCTTTGCTGCAGTTCCCTCCTCCCTAAGTTCGAAGTTCCTTCCTCTAAGTTCGAAGGTTCTCATGCGCTTCGCTGCGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGTGTTTCGCTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCTCTTCTCTCCGCTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCCTTCTCCAAGTTCAAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCCTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGGCCTCGTTCCACTCCATCTTCAAATGTTGGCAGTTGACGGCGTCCACTGCGCTTCATCTTCAAATGTTGGCAGTTGA

Coding sequence (CDS)

ATGTCATTCAAGACTTCTTCGATGGTCGCTGTCGAGATCAAGTCTTACATGGGTTCAACTGCCCATTGTTGCTTCAATGAACTGAGGTTGCAAGAAGATAAAGCTTCTATCATTGCAAGCGAAGAAACAACCTTGCAGGGGGCATATACCAATGACAAGTTTCTTGTTAAGTATAACCCTCTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGACTGAGATGCAAGAACACATCAACAACTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCGTAAAAAATCACGACAAAGGAAAGTCTATAGTGCAAGATGATCATCCACAATGTTCTGTTTTGGTCGCTTCACTATCCATCCAACAGCTCGAAGATATGATCACAAACTGTATCAGATCTCCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTCAATTCTAAAGCTGGCTATGGAAAGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAGCAAACATCAAAGAAAGAAGGATCCTAAGAAACTTCAACCCAAGAGAAAGAGAAGTAAAAAGTTCTCTCAACCTCAACAACAGGTGATGTTGAATAAATCATTCTCCAAAACTTTCCACAAAAAGAAAAAAGAGAACCTTGCGACTTCCTACTGCATCAACGTAGAAGAAGTTGACAATTCTAAGAAGAGTGAACAAAGGACTTCCGTCTTTGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCATAGAATGAGTATGGTCGCGACAGAGGAAGAAAATCAATGCTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAATCGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGAAGAAGTAAACAGTGACACGAAGCTTCATAGTAGCATCCCGTCGCGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCCTTTTCTCCAAGTACGAAGGTGCTCCTTCTCCAAGTTCGAAGGCTCTTACATTGCTGCGATGCAGTTCCTTCTCTCTAAGTTCAAAGGTTCTCACGCGTTCCGCTACAGTTCCTTCTCTCCAAGTACGAAGGTTCTCTCCTCCAAGTCGGAAGGTTCTCACGTTGCTTCGTCTTAGTTCCTTCTCTCCAAGTACGAAGGTTCTCTCCTCCAAGTCGAAGGTTCTCTCACGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTTTCATGCGCTTCGCTGCAGTTTCTTCTCCCTAAGTTTGAAGGTTCTCACGCGCTTTGCTGCAGTTCCCTCCTCCCTAAGTTCGAAGTTCCTTCCTCTAAGTTCGAAGGTTCTCATGCGCTTCGCTGCGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGTGTTTCGCTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCTCTTCTCTCCGCTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCCTTCTCCAAGTTCAAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCCTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGGCCTCGTTCCACTCCATCTTCAAATGTTGGCAGTTGACGGCGTCCACTGCGCTTCATCTTCAAATGTTGGCAGTTGA

Protein sequence

MSFKTSSMVAVEIKSYMGSTAHCCFNELRLQEDKASIIASEETTLQGAYTNDKFLVKYNPLFEPDSDVVTVMMTETRTMEERMTEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHDKGKSIVQDDHPQCSVLVASLSIQQLEDMITNCIRSPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDSILKLAMERKIELDLDEVAQSNLATIKEKSKHQRKKDPKKLQPKRKRSKKFSQPQQQVMLNKSFSKTFHKKKKENLATSYCINVEEVDNSKKSEQRTSVFDRIKPPTTRPSVFHRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTIDQPKRKMNNLELKLFEEVNSDTKLHSSIPSRMKRKFSVLINTEGSLKFLFSKYEGAPSPSSKALTLLRCSSFSLSSKVLTRSATVPSLQVRRFSPPSRKVLTLLRLSSFSPSTKVLSSKSKVLSRCFAAVPSSKFKGFHALRCSFFSLSLKVLTRFAAVPSSLSSKFLPLSSKVLMRFAAQFLPPSSKVLMRFAAQFLPPSSKVLMCFAATFLQVRRFSHALLQFLPPSSKVPSRASLAPSPSSKALLSAAPSPSSKALLSTAPSPSSKALLSTTPSPSSKALLSTAPSPSSKVLLSTPPFEGSPLRFSFSKFEGSPLLLFKCLAAVDGLVPLHLQMLAVDGVHCASSSNVGS
Homology
BLAST of Lag0032320 vs. NCBI nr
Match: TYK09793.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 239.2 bits (609), Expect = 1.1e-58
Identity = 191/546 (34.98%), Postives = 253/546 (46.34%), Query Frame = 0

Query: 34  KASIIASEETTLQGAYTNDKFLVKYNPLFE--PDSDVVTVMMTETRTMEERMTEMQEHIN 93
           K  I+  E   +   Y++ +      P  E  P  ++++VM+T   T E RMTE+++ +N
Sbjct: 51  KGGIVIKENPAIDEHYSSSQ------PSSEEMPHPNIMSVMVTNVDTSENRMTELEKKVN 110

Query: 94  NLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHDKGKSIVQDDHPQCSVLVASLSI 153
            LMK +EE+D +I  LK+ IE+   AESS    VKN DKGK+++Q+   Q S  + SLS+
Sbjct: 111 MLMKVVEERDYEIAFLKNHIESHDAAESSHKHTVKNTDKGKAVMQESQSQNSTSIESLSV 170

Query: 154 QQLEDMITNCIRS----------------------------------------------- 213
           QQL++MI N I++                                               
Sbjct: 171 QQLQEMIANSIKTQYGGPAQTFSLYSKPYMKRIDNLRMPNGYQPPKFQQFDGKGNPKQHV 230

Query: 214 -----------------------------PEEMEKVDDPKYCKYHRVIGHPVERCFVLKD 273
                                        PE+ EKVDDP YCKYHRVI HPVE+CFVLK+
Sbjct: 231 AHFIETCETADMLEQLLENQLIQLPECKRPEQAEKVDDPNYCKYHRVISHPVEKCFVLKE 290

Query: 274 SILKLAMERKIELDLDEVAQSN-------------------------------------- 333
            ILKLA E+KIELD+DEVAQ+N                                      
Sbjct: 291 LILKLAREKKIELDIDEVAQTNHVAIEMTSNVPPLTQLDDQRKSLIQFGTFAPILVLFQQ 350

Query: 334 -LATIKEKSKHQRKKD---------------PKKLQ-----------------PKRKRSK 393
              TI  ++K    KD               P  +Q                  K  R+K
Sbjct: 351 RTVTINSQNKEAHGKDDGEGWITVTRQKGRQPNSIQKESRFHQKYAKGSISYKKKGSRNK 410

Query: 394 K-------------FSQPQQQVMLNKSFSKTF---HKKKKENLATSYCINVEEVD----- 405
           K             F Q ++ + L +   ++F   H ++   +   +  ++ EVD     
Sbjct: 411 KMWNPKPIKGKDEDFLQLRRSITLAEFLPRSFLEGHPEEILEVTACHAASIVEVDNNYGS 470

BLAST of Lag0032320 vs. NCBI nr
Match: TYK15207.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 214.5 bits (545), Expect = 2.9e-51
Identity = 161/440 (36.59%), Postives = 227/440 (51.59%), Query Frame = 0

Query: 69  VTVMMTETRTMEERMTEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNH 128
           +++M T+  T E+R+ E+++ IN LMK +EE+D +I  LK+ IE++  AESS    + N 
Sbjct: 1   MSIMATDVDTSEDRIVEIEKKINMLMKVVEERDYEITSLKNYIESRDAAESSHKHTINND 60

Query: 129 DKGKSI------------------------VQDDHPQCSV-------LVASLSIQQ---- 188
           DKGK +                        +Q D   C         ++   +I+Q    
Sbjct: 61  DKGKFVRSLKENSFGWYTDLEPESIYSWEQLQRDFLNCFYSTRHIVSMMELTNIRQPKEK 120

Query: 189 -----------------LEDMITNCI------RSPEEMEKVDDPKYCKYHRVIGHPVERC 248
                            LE ++ N +      + P++  KVDDP YCKYHRVI HPVE+C
Sbjct: 121 QVIDYINRWRALSLDYMLEQLLENQLIQLPKCKRPKQARKVDDPNYCKYHRVISHPVEKC 180

Query: 249 FVLKDSILKLAMERKIELDLDEVAQSNLATIKEKSKHQRKKDPKKLQPKRKRSKKFSQPQ 308
           F+LK+ ILKLA E+KIELD+ EVAQ+N   ++                        S P 
Sbjct: 181 FLLKEMILKLAREKKIELDIYEVAQTNHVAVE---------------------MTLSVPP 240

Query: 309 QQVMLNKSFSKTFHKKKKENLATSYCINV----------EEVDNSKKSEQRTSVFDRIKP 368
               LN       H ++   +   + + +          EEVDNS + +QRT VFDRIKP
Sbjct: 241 STHFLND------HLEEVSEVTACHAVGIVEVDNNYASSEEVDNSNEVKQRTYVFDRIKP 300

Query: 369 PTTRPSVFHRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTIDQ 428
             TR S+F R SM   EE+NQC MSTST+ SAF+RLS+STSK+ R  TS FDRLK+T DQ
Sbjct: 301 SITRSSIFQRWSMATKEEKNQCPMSTSTQTSAFKRLSISTSKRDRPLTSDFDRLKMTNDQ 360

Query: 429 PKRKMNNLELKLFEEVNSDTKLHSSIPSRMKRKFSVLINTE-GSLKFLFSKYEGAPSPSS 440
            +R+M  L+ K F E N+D K+++ +PS MKRK  V INTE GS+      +      S+
Sbjct: 361 QQREMKTLKAKPFHEENNDNKINNRVPSHMKRKL-VDINTEVGSIDIFIFSHVLQLGGST 412

BLAST of Lag0032320 vs. NCBI nr
Match: KAA0066166.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 213.4 bits (542), Expect = 6.4e-51
Identity = 161/440 (36.59%), Postives = 226/440 (51.36%), Query Frame = 0

Query: 69  VTVMMTETRTMEERMTEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNH 128
           +++M T+  T E+R+ E+++ IN LMK +EE+D +I  LK+ IE++  AESS    + N 
Sbjct: 1   MSIMATDVDTSEDRIVEIEKKINMLMKVVEERDYEITSLKNYIESRDAAESSHKHTINND 60

Query: 129 DKGKSI------------------------VQDDHPQCSV-------LVASLSIQQ---- 188
           DKGK +                        +Q D   C         ++   +I+Q    
Sbjct: 61  DKGKFVRSLKENSFGWYTDLEPESIYSWEQLQRDFLNCFYSTRHIVSMMELTNIRQPKEK 120

Query: 189 -----------------LEDMITNCI------RSPEEMEKVDDPKYCKYHRVIGHPVERC 248
                            LE ++ N +      + P++  KVDDP YCKYHRVI HPVE+C
Sbjct: 121 QVIDYINRWRALSLDYMLEQLLENQLIQLPKCKRPKQARKVDDPNYCKYHRVISHPVEKC 180

Query: 249 FVLKDSILKLAMERKIELDLDEVAQSNLATIKEKSKHQRKKDPKKLQPKRKRSKKFSQPQ 308
           F+LK  ILKLA E+KIELD+ EVAQ+N   ++                        S P 
Sbjct: 181 FLLKKMILKLAREKKIELDIYEVAQTNHVAVE---------------------MTLSVPP 240

Query: 309 QQVMLNKSFSKTFHKKKKENLATSYCINV----------EEVDNSKKSEQRTSVFDRIKP 368
               LN       H ++   +   + + +          EEVDNS + +QRT VFDRIKP
Sbjct: 241 STHFLND------HLEEVSEVTACHAVGIVEVDNNYASSEEVDNSNEVKQRTYVFDRIKP 300

Query: 369 PTTRPSVFHRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTIDQ 428
             TR S+F R SM   EE+NQC MSTST+ SAF+RLS+STSK+ R  TS FDRLK+T DQ
Sbjct: 301 SITRSSIFQRWSMATKEEKNQCPMSTSTQTSAFKRLSISTSKRDRPLTSDFDRLKMTNDQ 360

Query: 429 PKRKMNNLELKLFEEVNSDTKLHSSIPSRMKRKFSVLINTE-GSLKFLFSKYEGAPSPSS 440
            +R+M  L+ K F E N+D K+++ +PS MKRK  V INTE GS+      +      S+
Sbjct: 361 QQREMKTLKAKPFHEENNDNKINNRVPSHMKRKL-VDINTEVGSIDIFIFSHVLQLGGST 412

BLAST of Lag0032320 vs. NCBI nr
Match: KAA0062063.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 208.4 bits (529), Expect = 2.1e-49
Identity = 177/534 (33.15%), Postives = 242/534 (45.32%), Query Frame = 0

Query: 55  LVKYNPLFEPD-----------SDVVTVMMTETRTMEERMTEMQEHINNLMKAIEEKDSQ 114
           ++K NPL+E D            +V++V+M +  T E    EM+  IN L+K +EE+D +
Sbjct: 60  VIKENPLYESDFASSKSKKEAHPNVMSVIMADI-TTEATKAEMERKINLLVKVVEERDHK 119

Query: 115 IEQLKSQIENQHIAESSQTQVVKNHDKGKSIVQDDHPQCSVLVASLSIQQLE-------- 174
           I   + Q+      ESS+T +VK  DKGK+++Q++  Q S+ +ASLS+QQL+        
Sbjct: 120 ITAFRDQMWTCESTESSKTPLVKADDKGKAVLQENQMQHSISIASLSVQQLKGNPKQHIA 179

Query: 175 --------------------------------------------------DMITNCIR-- 234
                                                             + + N I   
Sbjct: 180 HFVETCENAGSRGDQLVSWEQLEIEFLNRFYSTRRVVSMMELKNIKQRKGEPVINYINRW 239

Query: 235 --------------------SPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDSILKLAME 294
                               + E++ KVDDP YCK+ R+I HPVE+CFVLK+ ILKLA E
Sbjct: 240 RALSMDYKDKLTELFVVEMCTQEQVGKVDDPNYCKHQRIISHPVEKCFVLKELILKLARE 299

Query: 295 RKIELDLDEVAQSNLATIK----------------------------------------- 354
            KIELD+DEV Q+N   IK                                         
Sbjct: 300 NKIELDIDEVTQTNHVAIKMTSSVLSSVFFYDQRESLIQFETFKPILVRFQQKIMMTNSQ 359

Query: 355 -------------------------------------------EKSKHQRKKDPKKLQPK 400
                                                       K+K +R K   K +P 
Sbjct: 360 YKEEPIKDDGKEWIVVARQKEKQTNFIQTKSHFHQKHSKGSISHKNKGKRNKKMSKSKPI 419

BLAST of Lag0032320 vs. NCBI nr
Match: KAA0050736.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ95700.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 206.5 bits (524), Expect = 7.9e-49
Identity = 140/339 (41.30%), Postives = 180/339 (53.10%), Query Frame = 0

Query: 163 RSPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDSILKLAMERKIELDLDEVAQSNL---- 222
           + PE++EKVDDP YCKYHR+I HPVE+CFVLK+ ILKLA E KI+LD+DEVAQ+N     
Sbjct: 157 KRPEQVEKVDDPNYCKYHRIISHPVEKCFVLKELILKLARENKIKLDIDEVAQTNYVAVN 216

Query: 223 ------------------------------------------------------------ 282
                                                                       
Sbjct: 217 MTSSVSSSILLYDQRESLIQFGTFEPILVRFQQKIMTSNFQNKEEPIEDEGEEWIVVAHK 276

Query: 283 --------------------ATIKEKSKHQRKKDPKKLQPKRKRSKKFSQPQQQVMLNKS 342
                                 I  K K +R K   K +P +++ +KF QP++ + L + 
Sbjct: 277 KERRTSSVQTKSHFHQKHSKGNISHKKKGRRNKKMWKPKPIKEKDEKFLQPRRSITLAEF 336

Query: 343 FSKTFHKKKKENLA------TSYCINV-------EEVDNSKKSEQRTSVFDRIKPPTTRP 402
           F ++F +   E +       T+  + V       EEVDNS + +QRTSVFDRIKP TTR 
Sbjct: 337 FPRSFLEDHSEEILEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRS 396

Query: 403 SVFHRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTIDQPKRKM 405
           SVF R+SM   EEENQC MST TR SAF+RLS+S SKK R STS FDRLK+T DQ +R+M
Sbjct: 397 SVFQRLSMATKEEENQCPMSTYTRTSAFKRLSISRSKKHRPSTSAFDRLKMTNDQQQREM 456

BLAST of Lag0032320 vs. ExPASy TrEMBL
Match: A0A5D3CD55 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00850 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 5.3e-59
Identity = 191/546 (34.98%), Postives = 253/546 (46.34%), Query Frame = 0

Query: 34  KASIIASEETTLQGAYTNDKFLVKYNPLFE--PDSDVVTVMMTETRTMEERMTEMQEHIN 93
           K  I+  E   +   Y++ +      P  E  P  ++++VM+T   T E RMTE+++ +N
Sbjct: 51  KGGIVIKENPAIDEHYSSSQ------PSSEEMPHPNIMSVMVTNVDTSENRMTELEKKVN 110

Query: 94  NLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHDKGKSIVQDDHPQCSVLVASLSI 153
            LMK +EE+D +I  LK+ IE+   AESS    VKN DKGK+++Q+   Q S  + SLS+
Sbjct: 111 MLMKVVEERDYEIAFLKNHIESHDAAESSHKHTVKNTDKGKAVMQESQSQNSTSIESLSV 170

Query: 154 QQLEDMITNCIRS----------------------------------------------- 213
           QQL++MI N I++                                               
Sbjct: 171 QQLQEMIANSIKTQYGGPAQTFSLYSKPYMKRIDNLRMPNGYQPPKFQQFDGKGNPKQHV 230

Query: 214 -----------------------------PEEMEKVDDPKYCKYHRVIGHPVERCFVLKD 273
                                        PE+ EKVDDP YCKYHRVI HPVE+CFVLK+
Sbjct: 231 AHFIETCETADMLEQLLENQLIQLPECKRPEQAEKVDDPNYCKYHRVISHPVEKCFVLKE 290

Query: 274 SILKLAMERKIELDLDEVAQSN-------------------------------------- 333
            ILKLA E+KIELD+DEVAQ+N                                      
Sbjct: 291 LILKLAREKKIELDIDEVAQTNHVAIEMTSNVPPLTQLDDQRKSLIQFGTFAPILVLFQQ 350

Query: 334 -LATIKEKSKHQRKKD---------------PKKLQ-----------------PKRKRSK 393
              TI  ++K    KD               P  +Q                  K  R+K
Sbjct: 351 RTVTINSQNKEAHGKDDGEGWITVTRQKGRQPNSIQKESRFHQKYAKGSISYKKKGSRNK 410

Query: 394 K-------------FSQPQQQVMLNKSFSKTF---HKKKKENLATSYCINVEEVD----- 405
           K             F Q ++ + L +   ++F   H ++   +   +  ++ EVD     
Sbjct: 411 KMWNPKPIKGKDEDFLQLRRSITLAEFLPRSFLEGHPEEILEVTACHAASIVEVDNNYGS 470

BLAST of Lag0032320 vs. ExPASy TrEMBL
Match: A0A5D3CTF5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00840 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.4e-51
Identity = 161/440 (36.59%), Postives = 227/440 (51.59%), Query Frame = 0

Query: 69  VTVMMTETRTMEERMTEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNH 128
           +++M T+  T E+R+ E+++ IN LMK +EE+D +I  LK+ IE++  AESS    + N 
Sbjct: 1   MSIMATDVDTSEDRIVEIEKKINMLMKVVEERDYEITSLKNYIESRDAAESSHKHTINND 60

Query: 129 DKGKSI------------------------VQDDHPQCSV-------LVASLSIQQ---- 188
           DKGK +                        +Q D   C         ++   +I+Q    
Sbjct: 61  DKGKFVRSLKENSFGWYTDLEPESIYSWEQLQRDFLNCFYSTRHIVSMMELTNIRQPKEK 120

Query: 189 -----------------LEDMITNCI------RSPEEMEKVDDPKYCKYHRVIGHPVERC 248
                            LE ++ N +      + P++  KVDDP YCKYHRVI HPVE+C
Sbjct: 121 QVIDYINRWRALSLDYMLEQLLENQLIQLPKCKRPKQARKVDDPNYCKYHRVISHPVEKC 180

Query: 249 FVLKDSILKLAMERKIELDLDEVAQSNLATIKEKSKHQRKKDPKKLQPKRKRSKKFSQPQ 308
           F+LK+ ILKLA E+KIELD+ EVAQ+N   ++                        S P 
Sbjct: 181 FLLKEMILKLAREKKIELDIYEVAQTNHVAVE---------------------MTLSVPP 240

Query: 309 QQVMLNKSFSKTFHKKKKENLATSYCINV----------EEVDNSKKSEQRTSVFDRIKP 368
               LN       H ++   +   + + +          EEVDNS + +QRT VFDRIKP
Sbjct: 241 STHFLND------HLEEVSEVTACHAVGIVEVDNNYASSEEVDNSNEVKQRTYVFDRIKP 300

Query: 369 PTTRPSVFHRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTIDQ 428
             TR S+F R SM   EE+NQC MSTST+ SAF+RLS+STSK+ R  TS FDRLK+T DQ
Sbjct: 301 SITRSSIFQRWSMATKEEKNQCPMSTSTQTSAFKRLSISTSKRDRPLTSDFDRLKMTNDQ 360

Query: 429 PKRKMNNLELKLFEEVNSDTKLHSSIPSRMKRKFSVLINTE-GSLKFLFSKYEGAPSPSS 440
            +R+M  L+ K F E N+D K+++ +PS MKRK  V INTE GS+      +      S+
Sbjct: 361 QQREMKTLKAKPFHEENNDNKINNRVPSHMKRKL-VDINTEVGSIDIFIFSHVLQLGGST 412

BLAST of Lag0032320 vs. ExPASy TrEMBL
Match: A0A5A7VII4 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G001730 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 3.1e-51
Identity = 161/440 (36.59%), Postives = 226/440 (51.36%), Query Frame = 0

Query: 69  VTVMMTETRTMEERMTEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNH 128
           +++M T+  T E+R+ E+++ IN LMK +EE+D +I  LK+ IE++  AESS    + N 
Sbjct: 1   MSIMATDVDTSEDRIVEIEKKINMLMKVVEERDYEITSLKNYIESRDAAESSHKHTINND 60

Query: 129 DKGKSI------------------------VQDDHPQCSV-------LVASLSIQQ---- 188
           DKGK +                        +Q D   C         ++   +I+Q    
Sbjct: 61  DKGKFVRSLKENSFGWYTDLEPESIYSWEQLQRDFLNCFYSTRHIVSMMELTNIRQPKEK 120

Query: 189 -----------------LEDMITNCI------RSPEEMEKVDDPKYCKYHRVIGHPVERC 248
                            LE ++ N +      + P++  KVDDP YCKYHRVI HPVE+C
Sbjct: 121 QVIDYINRWRALSLDYMLEQLLENQLIQLPKCKRPKQARKVDDPNYCKYHRVISHPVEKC 180

Query: 249 FVLKDSILKLAMERKIELDLDEVAQSNLATIKEKSKHQRKKDPKKLQPKRKRSKKFSQPQ 308
           F+LK  ILKLA E+KIELD+ EVAQ+N   ++                        S P 
Sbjct: 181 FLLKKMILKLAREKKIELDIYEVAQTNHVAVE---------------------MTLSVPP 240

Query: 309 QQVMLNKSFSKTFHKKKKENLATSYCINV----------EEVDNSKKSEQRTSVFDRIKP 368
               LN       H ++   +   + + +          EEVDNS + +QRT VFDRIKP
Sbjct: 241 STHFLND------HLEEVSEVTACHAVGIVEVDNNYASSEEVDNSNEVKQRTYVFDRIKP 300

Query: 369 PTTRPSVFHRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTIDQ 428
             TR S+F R SM   EE+NQC MSTST+ SAF+RLS+STSK+ R  TS FDRLK+T DQ
Sbjct: 301 SITRSSIFQRWSMATKEEKNQCPMSTSTQTSAFKRLSISTSKRDRPLTSDFDRLKMTNDQ 360

Query: 429 PKRKMNNLELKLFEEVNSDTKLHSSIPSRMKRKFSVLINTE-GSLKFLFSKYEGAPSPSS 440
            +R+M  L+ K F E N+D K+++ +PS MKRK  V INTE GS+      +      S+
Sbjct: 361 QQREMKTLKAKPFHEENNDNKINNRVPSHMKRKL-VDINTEVGSIDIFIFSHVLQLGGST 412

BLAST of Lag0032320 vs. ExPASy TrEMBL
Match: A0A5A7V1P3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G004060 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.0e-49
Identity = 177/534 (33.15%), Postives = 242/534 (45.32%), Query Frame = 0

Query: 55  LVKYNPLFEPD-----------SDVVTVMMTETRTMEERMTEMQEHINNLMKAIEEKDSQ 114
           ++K NPL+E D            +V++V+M +  T E    EM+  IN L+K +EE+D +
Sbjct: 60  VIKENPLYESDFASSKSKKEAHPNVMSVIMADI-TTEATKAEMERKINLLVKVVEERDHK 119

Query: 115 IEQLKSQIENQHIAESSQTQVVKNHDKGKSIVQDDHPQCSVLVASLSIQQLE-------- 174
           I   + Q+      ESS+T +VK  DKGK+++Q++  Q S+ +ASLS+QQL+        
Sbjct: 120 ITAFRDQMWTCESTESSKTPLVKADDKGKAVLQENQMQHSISIASLSVQQLKGNPKQHIA 179

Query: 175 --------------------------------------------------DMITNCIR-- 234
                                                             + + N I   
Sbjct: 180 HFVETCENAGSRGDQLVSWEQLEIEFLNRFYSTRRVVSMMELKNIKQRKGEPVINYINRW 239

Query: 235 --------------------SPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDSILKLAME 294
                               + E++ KVDDP YCK+ R+I HPVE+CFVLK+ ILKLA E
Sbjct: 240 RALSMDYKDKLTELFVVEMCTQEQVGKVDDPNYCKHQRIISHPVEKCFVLKELILKLARE 299

Query: 295 RKIELDLDEVAQSNLATIK----------------------------------------- 354
            KIELD+DEV Q+N   IK                                         
Sbjct: 300 NKIELDIDEVTQTNHVAIKMTSSVLSSVFFYDQRESLIQFETFKPILVRFQQKIMMTNSQ 359

Query: 355 -------------------------------------------EKSKHQRKKDPKKLQPK 400
                                                       K+K +R K   K +P 
Sbjct: 360 YKEEPIKDDGKEWIVVARQKEKQTNFIQTKSHFHQKHSKGSISHKNKGKRNKKMSKSKPI 419

BLAST of Lag0032320 vs. ExPASy TrEMBL
Match: A0A5A7U974 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00280 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 3.8e-49
Identity = 140/339 (41.30%), Postives = 180/339 (53.10%), Query Frame = 0

Query: 163 RSPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDSILKLAMERKIELDLDEVAQSNL---- 222
           + PE++EKVDDP YCKYHR+I HPVE+CFVLK+ ILKLA E KI+LD+DEVAQ+N     
Sbjct: 157 KRPEQVEKVDDPNYCKYHRIISHPVEKCFVLKELILKLARENKIKLDIDEVAQTNYVAVN 216

Query: 223 ------------------------------------------------------------ 282
                                                                       
Sbjct: 217 MTSSVSSSILLYDQRESLIQFGTFEPILVRFQQKIMTSNFQNKEEPIEDEGEEWIVVAHK 276

Query: 283 --------------------ATIKEKSKHQRKKDPKKLQPKRKRSKKFSQPQQQVMLNKS 342
                                 I  K K +R K   K +P +++ +KF QP++ + L + 
Sbjct: 277 KERRTSSVQTKSHFHQKHSKGNISHKKKGRRNKKMWKPKPIKEKDEKFLQPRRSITLAEF 336

Query: 343 FSKTFHKKKKENLA------TSYCINV-------EEVDNSKKSEQRTSVFDRIKPPTTRP 402
           F ++F +   E +       T+  + V       EEVDNS + +QRTSVFDRIKP TTR 
Sbjct: 337 FPRSFLEDHSEEILEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRS 396

Query: 403 SVFHRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTIDQPKRKM 405
           SVF R+SM   EEENQC MST TR SAF+RLS+S SKK R STS FDRLK+T DQ +R+M
Sbjct: 397 SVFQRLSMATKEEENQCPMSTYTRTSAFKRLSISRSKKHRPSTSAFDRLKMTNDQQQREM 456

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK09793.11.1e-5834.98ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK15207.12.9e-5136.59Retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0066166.16.4e-5136.59Retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0062063.12.1e-4933.15ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0050736.17.9e-4941.30retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ95700.1 retrotranspos... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CD555.3e-5934.98Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3CTF51.4e-5136.59Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7VII43.1e-5136.59Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5A7V1P31.0e-4933.15Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7U9743.8e-4941.30Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 76..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 318..339
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 221..251
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 617..650
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 227..246

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032320.1Lag0032320.1mRNA