Lag0032308 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032308
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDNA helicase
Locationchr11: 30167447 .. 30169785 (+)
RNA-Seq ExpressionLag0032308
SyntenyLag0032308
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACCAAGGTAAGGAAGTTGAGAGAAAACAAACATAATTTTGAAAAACCAAAAACCAAATGGTTATCAAACGGAGCCTGAATAATATAATCTAACAGTTTAATGTCTATATGTATATTGGATTTACAATCTTAATCTTGACCATCTTCAGTTTCCATTAAAACATTGAAAACAATTATACATAATATTGGCTGAGTGGATGGCAATGATTTTACAACATTTTTATTTTAACCTGATAAATGATAATGTCTTCCTCTGTGTAATACCTCAATTCTAATTAGTGATTTGTTTCAGGAGCATTTCCAGAAATTAAGGATTGAAAATGCAATGGGCTCCTCAGCACCAACAGCAAAACAGGTAGCTATGATTTATATGCTATTTCTGAAATATTATTGTTATTTAAAACGAGCTTAGTACTTGGATCTGAATATCATTGAAATGGTAAAATTAGTGATATGGAGTTTCTAACCTCAACTTATTATAAACCCTAAACCCTAAACCTCAACTTACTAAAGTTTCTGTGAAGTTTGTTTTCATCATTATAAAAAATAAGAACAGTTACATTTTATTATATTTTTTATTTAAATTTTTTTACATTTGATAGATATACACATGTTTTAGGGCTCCTGATTATTTTGTCAATCATGTTCACTGTATTTCCTTTTGAGTTTAGTTCCCCTTCGCTTTCACTATTCATTTTCTTTTATATTTTGTAAGTTTGCTCCATATTCTGTCAAGTACATCCATTCTTGGTTCAATAGACATCAGACCAAGATTCTTTATGTTTTTTTAAATGGCTCGCCAACTACTGAGTGGTTTCACCTACACCAAGGCTAGCTTTAGAGATAACAAGATTTTTGAGTTATTTTCTAAAATAGAGGCTTGAACGACCAACACGAGCATAGCTCAACTGACGTAAAGTTTGTACTATCAATCAAAAAGTTAGAAGTTCAAATCTCTACTTCACAAATATCGTCCAAATCTCAAGTCCTTATGACTGAGATACATGTATTTTGTGTAGTGTAATTGGTATTAGGATGGAATTTCAATTTTTTGATATACGTGTTTACCCATTCTCTCTTTTTCTTCTTGACACATTTATCTAATATATCGAATTAACAGATTTCGTATTTGCGTAATTTGGGATGTACTATTACTCCAACATCGCGTCTCCATGCATCGTCCTTGATCGAGCAATACAAATCACTATAACTACTCTCTAGAAAAATGCCCACAGGTAATGAACCATTATCATGTATGTGCCTACCATTTGCTAATATGGAAGTTGTATGACTGTTTGAGCTTAGTCATTTTTTGCTTCAACCAAGTTTTACTATATTTTGTCATTTAGTCTTCTCATTTTCAAGGTGATAAAATTTCCCTGATATCATTTGTAATCCCATGGATGTAGAAATCATTTTTTTGTTAAAATCAACCTATTTAGACCATATGGGAGCTTCTTTCCACCTTATATTAATTAATAAATGTTAAATTATAAGTTTAGTATCTAAATTCTTAGGTTGTATCAATTTGTTCTCTAAACTTTAAAAAATGTCTAATAGGTCCCTGAACTTTCAATTTTGTGTCTCATAGGTTTCTGAAATTTAGAAATGTCTAATAAAGTCCTTAAACTTTCAATCTTGTGTCTAATAGGTTCCGGCATATTTGAGATTTTTAGAAATTAACCAATTTACTAGATATAAAATTGAATTTTATGCCTATTTGGACCATAAACTTCCAATTTTGTATATAATAGGTTTGTGAATTTTTAAAAAATCTTAAATAGGTTAAGGATTTATTAAATTCAAAATTGAAAGTTGAGGGACCTATTGGACACAAAGTTAAAAGTTTAAAGATCGACCTATTAGATACAAAATTGAAAGTTTGAGAAATTATTTGAAACTTTTTAAAGTTCAGAGACCAAATTGACACAACCTGGGTTGTTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTAAATAAATTTGGATTTGTTATCAAGTTTCATCAATATTGATGGCCTCATTTTTTTAATAATCATATTATTATATAGAGATAATAACGGTTTTTATTTTTTTTGAAATTAGATAATAACAATCTTGAAGTTGATTAGTAGAAAGTAACGTATGTGTTTATTTATTCATTATTATTTTGAGATTGCAGGCCTTTGATGGTAGTTTGTAAATTTCAATTACAGTGGAACTGGAAGAAGGGGATAGACTATTAGGGGCTGTTGGCCCATGGTTTCGGAATCAGAATCAGCCTGGGAATCAGAAAACAGTGTTTGGGGTGCTGTGTTCTGAACCAAACAGTGTTTGGGGTGCTGGGTTCTGA

mRNA sequence

ATGAAAACCAAGGAGCATTTCCAGAAATTAAGGATTGAAAATGCAATGGGCTCCTCAGCACCAACAGCAAAACAGATTTCGTATTTGCGTAATTTGGGATGTACTATTACTCCAACATCGCTGGAACTGGAAGAAGGGGATAGACTATTAGGGGCTGTTGGCCCATGGTTTCGGAATCAGAATCAGCCTGGGAATCAGAAAACAGTGTTTGGGGTGCTGTGTTCTGAACCAAACAGTGTTTGGGGTGCTGGGTTCTGA

Coding sequence (CDS)

ATGAAAACCAAGGAGCATTTCCAGAAATTAAGGATTGAAAATGCAATGGGCTCCTCAGCACCAACAGCAAAACAGATTTCGTATTTGCGTAATTTGGGATGTACTATTACTCCAACATCGCTGGAACTGGAAGAAGGGGATAGACTATTAGGGGCTGTTGGCCCATGGTTTCGGAATCAGAATCAGCCTGGGAATCAGAAAACAGTGTTTGGGGTGCTGTGTTCTGAACCAAACAGTGTTTGGGGTGCTGGGTTCTGA

Protein sequence

MKTKEHFQKLRIENAMGSSAPTAKQISYLRNLGCTITPTSLELEEGDRLLGAVGPWFRNQNQPGNQKTVFGVLCSEPNSVWGAGF
Homology
[Close]
BLAST of Lag0032308 vs. NCBI nr
Match: XP_038907257.1 (ATP-dependent DNA helicase SRS2-like protein At4g25120 isoform X1 [Benincasa hispida] >XP_038907258.1 ATP-dependent DNA helicase SRS2-like protein At4g25120 isoform X1 [Benincasa hispida])

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-10
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 4    KEHFQKLRIENAMGSSAPTAKQISYLRNLGCTITPTS 41
            +EHFQKLRIENAMGSSAPTAKQISYLRNLGCTITPTS
Sbjct: 1074 QEHFQKLRIENAMGSSAPTAKQISYLRNLGCTITPTS 1110

[Close]
BLAST of Lag0032308 vs. NCBI nr
Match: XP_022158809.1 (ATP-dependent DNA helicase SRS2-like protein At4g25120 isoform X6 [Momordica charantia])

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-10
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 4   KEHFQKLRIENAMGSSAPTAKQISYLRNLGCTITPTS 41
           +EHFQKLRIENAMGSSAPTAKQISYLRNLGCTITPTS
Sbjct: 749 QEHFQKLRIENAMGSSAPTAKQISYLRNLGCTITPTS 785

[Close]
BLAST of Lag0032308 vs. NCBI nr
Match: XP_038907259.1 (ATP-dependent DNA helicase SRS2-like protein At4g25120 isoform X2 [Benincasa hispida])

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-10
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 4    KEHFQKLRIENAMGSSAPTAKQISYLRNLGCTITPTS 41
            +EHFQKLRIENAMGSSAPTAKQISYLRNLGCTITPTS
Sbjct: 1004 QEHFQKLRIENAMGSSAPTAKQISYLRNLGCTITPTS 1040

[Close]
BLAST of Lag0032308 vs. NCBI nr
Match: XP_022158784.1 (ATP-dependent DNA helicase SRS2-like protein At4g25120 isoform X1 [Momordica charantia])

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-10
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 4    KEHFQKLRIENAMGSSAPTAKQISYLRNLGCTITPTS 41
            +EHFQKLRIENAMGSSAPTAKQISYLRNLGCTITPTS
Sbjct: 1074 QEHFQKLRIENAMGSSAPTAKQISYLRNLGCTITPTS 1110

[Close]
BLAST of Lag0032308 vs. NCBI nr
Match: XP_022158805.1 (ATP-dependent DNA helicase SRS2-like protein At4g25120 isoform X5 [Momordica charantia])

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-10
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 4   KEHFQKLRIENAMGSSAPTAKQISYLRNLGCTITPTS 41
           +EHFQKLRIENAMGSSAPTAKQISYLRNLGCTITPTS
Sbjct: 783 QEHFQKLRIENAMGSSAPTAKQISYLRNLGCTITPTS 819

[Close]
BLAST of Lag0032308 vs. ExPASy Swiss-Prot
Match: D1KF50 (ATP-dependent DNA helicase SRS2-like protein At4g25120 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.2e-08
Identity = 25/37 (67.57%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 4    KEHFQKLRIENAMGSSAPTAKQISYLRNLGCTITPTS 41
            +EHFQKLRIEN+MG+S  T+KQI++L +LGCT+ PTS
Sbjct: 1097 QEHFQKLRIENSMGTSEATSKQIAFLHSLGCTVVPTS 1133

The following BLAST results are available for this feature:
BLAST of Lag0032308 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038907257.11.5e-1097.30ATP-dependent DNA helicase SRS2-like protein At4g25120 isoform X1 [Benincasa his... [more]
XP_022158809.11.5e-1097.30ATP-dependent DNA helicase SRS2-like protein At4g25120 isoform X6 [Momordica cha... [more]
XP_038907259.11.5e-1097.30ATP-dependent DNA helicase SRS2-like protein At4g25120 isoform X2 [Benincasa his... [more]
XP_022158784.11.5e-1097.30ATP-dependent DNA helicase SRS2-like protein At4g25120 isoform X1 [Momordica cha... [more]
XP_022158805.11.5e-1097.30ATP-dependent DNA helicase SRS2-like protein At4g25120 isoform X5 [Momordica cha... [more]
BLAST of Lag0032308 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
D1KF503.2e-0867.57ATP-dependent DNA helicase SRS2-like protein At4g25120 OS=Arabidopsis thaliana O... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032308.1Lag0032308.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032508 DNA duplex unwinding
biological_process GO:0036292 DNA rewinding
biological_process GO:0000725 recombinational repair
cellular_component GO:0005634 nucleus
molecular_function GO:0043138 3'-5' DNA helicase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0016887 ATP hydrolysis activity
molecular_function GO:0003677 DNA binding