Lag0032301 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0032301
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	late embryogenesis abundant protein At5g17165-like
Location	chr11: 30025486 .. 30029842 (+)
RNA-Seq Expression	Lag0032301
Synteny	Lag0032301

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCACTTCGAAGCTTATTATTATTGCTCGACCACTCGCTCATTTGCGGAAGCCACACCCTTTTTCTTCGGTTTTCACCCTCCGGTACGCATACGCTTTTTCTTCTTCCCTTTTTGTTTTTTCTATTTTTTTTTTTTAAGTTACAACTTCACCATATTTGTGTTTATTTGGTCTTTAAATTTTAAAAAGTCGTAATAAATTACTAAGGCTTCGTTCGATAATTTGATAACCATTTGATTTTTGGTTTTTGAAAACTATGCTTGTTTTCTTCTAATTTTCTTATTATGTTTTCATCCTTGTTAAGGACATATTTGAATTTCTAGCCAAATTCCAAAAACAAAACACAAGTTTTTGAAAACTATATTTTTTTAGTTTTCAAATATTGGCTTGGTTTTTAAAACATAAAAACAAGGTAGATGAAAAACACAAAGAAACTTATAAGTGAGAGTAGTGTTTTAAGCTTAATTTTAAAAAATCAAAAACCAAAAACTAAGGCCCCGTTTGATAACCATTTGGTTTTTGGTTTTTGGTTTTTGAAAATTAAGCTAATAAATCCTACTTCCACCTTCAAACTTCTTTGTTTTTCTAATACCTTTCTTTCCTTGTTTTTAAAAACCAAGCAAATTTTGAAAACTAAAAAAAGTAGTTTTCAAAACTTGTTTTGTTTTTAGAATTTGGCTATGAATTCAAATGTCATTGACAAAAATGAAAACCATGGTAGGGAAGAAATTGGAAGAAAACAAGCCTAATTTTGAAAAACCAAAAACCAAAAACCAAATAGTTATCAAACAGGGCCTAAATGGTTATTTAATAAATTTTCAATTTTGTGTCTAACAAGTCATTCAACTATTGAACGTAAAATTGAAAATTCAAAAATTTATTGGATAAAAAATTGAGAGTATAAGGATCTATTGAACAAGTTTTTATGGATAAAATAACACAAATATAAAAGTTTAACGATGTATTAGAAACTTCTAAGAATTTAGAGATTAAATAGACCCAAATCGTGAAAGTTTTGGAAGTAAACTTTTAACTTTCATTAACCTAGTTTTTCTTTCTTCTGTTTTTTTTTTTTTTTTTTTTTCAAAATTGGAACCTAGTTTTGTTACTCGAATTGGAATTTTGTGATCGAACATTTCGTTTGATTTGTTTTGATGTGCGAAATCGAAACATTATGTTGATCAATATCGGAATAATTTTTTAAATAATAGATTTTTTTTTTTAATTAATAGAGTGTTTGAAATGGTTTTTGGGGAAGAAACAATGTTTTTAAATAAAAATCATAATTCCTTTGAACACCTTTAAAAGAATTACTAATTAAAAGTGTGTTGGTATAGTTTTTAAATGATTTTGAAATGACAAAAAAATATATTTAAAAAAATTTTAATAAATAAAAAAATTTAAAAATTAGATTTTTTTTTTTTAACTCTTTGTCATAACAAGAAAACTATCTATATATAGAACCACTTTTTAATATAGTGTAGCGAAATAAGTTTTTTGTTAAAAGAACTTTTTAAAAACGGAAGAATTAAAAGTATTTTTATTAAAAGAATCTTGAAAAAGTAATAGGCACCCCAGGTATGTCTTGGTAAAATATTTATTATCTAAGTACCTTTTAGAAACCACTTAGTCCATTTTTCAAAAAAAAAAAAAAAGAAAAAAGAAAGAAAGAAACCACTTAGTCCATTCTCGTTGTGTCTACTAAATTTAAAAAATGTTTAATGGGTATCAAAATTTTAATTTTGGGTTAAATAAGTTTTTAACTTTTAATGTTGAATTTTATACTTTATGGGTTTTTTTTTTTTTTACAATTTGTGGGGTGTGGGATTCGAACCATTGTTGGCTACTTTATGGGTGTTTAAACTTTTATTTTTGTATTGAATAAGTTTCGAACCATAGACCTCGTGATTATCAGTACAACATTATGCCAGTTGAGCTATGCTCTTGTTGACTACTTTATGGCTATTTTTGTATTTTTTATTTTTTATTTTATTTTTTAAAGTTCAAGATGAATTTGACGTAAGTATGAATTTTAAGACTACATTTGGAATTTAATTTATATATTTAATGAATTTCTTAAATAATATTTTAATATCGAAAATTTCAAAATGTTTTTTTTTTTCTAACAAAAGGCTCATTTTACTATTTCTTTTAATTTCCAACTGAATGCTACCAATTTTTTTTTAAACAAAATATTTTTAGCCATTTATTAGCATTAGGGTAAAAACACATTGATGAGTGAACACATTGGATTTCCTTTCCTTTTCTTTTGGTTGTTAACAACTTCAAAATGCTAAAAGATACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTAATTGGTTTCTGTTGGGAATTGGGGGTGCAACCAAAGTCCCACATTGGTTAAATAAGGGGATGATCATGGGTTTATAAGGGAGGAAAAATATCTCCATTAGCATGAGGCTTTTTGGGTGGAACCAAAAGCAAAACCATGAGGGTTTATGCCTAAAGTGGACAATATCATACCATTGTTGAGATCTGTGTTGTGTCCTCGTCCTTAACAGTTTCTTTTATGGTAAGAAACATGCTGATGATTATTTTTAAGTCTTGTAAAGAATCTAACGATAATATAATACATTTCTTATTTCAATAACAAAAATTATCTTTTTATCAACATAAACACAGTTCAACTGACATACAATTTTGTATTCCCCCACACATGTTAAAAATATATATATATTTTTTTTTAAGATAATTCCGGTAAGAAACAATTTAATTATATTTGACAAAAATAATTTCTAATGATAATATTAAAAACCAATTAACGACTAGAAAGTTAATATTTTTTTTTTTTTTTTTTTGAACAAACGACTAGAAAGTTAATATTTTATGAAGTAATTTTCTAATATAATTATTTTCAGGAAATCTAATATAATATCTTAAGATTCAAATTTATAATTGTCAGTGATTTGAATGGATATCACATAGTTTATTTCATTACTTAAATCATTATTATTGAAGTAAGGACAATCTTGTTCTTTGGGTTTAATTTCTCTTTTAAATTTGGGGTAAAAAAGTTGTCTTACAAAATGTTATAATTTCCTTGGACAAGGACAGGATCTTTGTACTTTAGGTCTATTTTATTTTCATTCAAAGTTGACGAATGATAAAGGGAAAAAAAATAAAATAAAATGTTAAATAACCATATACGTTTTGAAGTGCAATCGCTTAGGTTTTTGATACGCACCTTCTATATTCTTATCCGATATTGCTGCCTGCCTCATGCGTTTTTCTTTTTCTTTTTTCTCTTTTTTTAAATTTTTTTTTTCCTAGTCAGTTGTTAATTATTTTATTATAATCTATGAATTGATAAATTATACAATACAAGTCAAACTCACTTATTGTATATTTAATTAAGAAAAATTGTAATTCCATTTTTTTATCTTGAACTTAAAAAGAATACAAATTTTTGTCTAATAGGTCGGTGAATTTTAACAAATATTAAATAGATCAAAATTAAAAGCCTATGAAACTATTAGACACAAAATTAAAAACTTAATGACCTATTATTATTAGTAGTTCATTTTTTTAAAATTTATTAATGAATTTAGACATTCTTAAAAGTTCAAAACGCTATTATACATAAACTTGAAAGTTGAAGAATATATTTAACAATGGATAATTTATGGTAGAAGAATCAAAATTAAAAAGTTCATCATATCATAAATATAGATAAAAAATTTAGGCCGGTTTGATAACCATTTGGTTTTTTGTTTTTGAAAATTAAGTTTATACACACCTACTTCCACCTAGTATCAATCTTCTTCATTTTTTTTCAAAAACCAAGTCCAATTTTGAAAACGAAAAAAAAAAAAAAAAAGAAAAGTTTTCAAAAACTTGTTTTTGTTTTTAGAATTTGATTAGGAATTCAAATGGATCCTTAAAAATGATGAAAGTCATGATAGAGAATTTAAAAAAAAAACATAATTTTCAAAAACCAAATGGTTATCGGATCTTAACAATTAAACACAATGATCAACAATATCATATTTGATGCAACAAAAATTGTATTTTCCAATTTTTTTCAGGGCAGGTCATTGGTCAGCATATGAGAAGAATCCAGAGGAGCAAATCTGCCCAACAGTGGTACCAGACCATGTGATCCACTCTCTATCTGAAAACTACTGGGTCCCACATCCTGAAACCGGAGTTTTTGGGCCACAAACAACTCACCACAGTTCTGTTCCAAACGACACGTCGGCTGGTGGGGGCGGCCATAAAGAGGGCTCGGTTCTGGAACTCAAGGCTTGGTTCCGACACAACGGCCTCGAGGACTCTGAGAAGCCACATTTTCTGTAA

mRNA sequence

ATGGCCGCCACTTCGAAGCTTATTATTATTGCTCGACCACTCGCTCATTTGCGGAAGCCACACCCTTTTTCTTCGGTTTTCACCCTCCGGGCAGGTCATTGGTCAGCATATGAGAAGAATCCAGAGGAGCAAATCTGCCCAACAGTGGTACCAGACCATGTGATCCACTCTCTATCTGAAAACTACTGGGTCCCACATCCTGAAACCGGAGTTTTTGGGCCACAAACAACTCACCACAGTTCTGTTCCAAACGACACGTCGGCTGGTGGGGGCGGCCATAAAGAGGGCTCGGTTCTGGAACTCAAGGCTTGGTTCCGACACAACGGCCTCGAGGACTCTGAGAAGCCACATTTTCTGTAA

Coding sequence (CDS)

ATGGCCGCCACTTCGAAGCTTATTATTATTGCTCGACCACTCGCTCATTTGCGGAAGCCACACCCTTTTTCTTCGGTTTTCACCCTCCGGGCAGGTCATTGGTCAGCATATGAGAAGAATCCAGAGGAGCAAATCTGCCCAACAGTGGTACCAGACCATGTGATCCACTCTCTATCTGAAAACTACTGGGTCCCACATCCTGAAACCGGAGTTTTTGGGCCACAAACAACTCACCACAGTTCTGTTCCAAACGACACGTCGGCTGGTGGGGGCGGCCATAAAGAGGGCTCGGTTCTGGAACTCAAGGCTTGGTTCCGACACAACGGCCTCGAGGACTCTGAGAAGCCACATTTTCTGTAA

Protein sequence

MAATSKLIIIARPLAHLRKPHPFSSVFTLRAGHWSAYEKNPEEQICPTVVPDHVIHSLSENYWVPHPETGVFGPQTTHHSSVPNDTSAGGGGHKEGSVLELKAWFRHNGLEDSEKPHFL

Homology

[Close]

BLAST of Lag0032301 vs. NCBI nr
Match: KAG6605657.1 (ATP-dependent DNA helicase SRS2-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 180.6 bits (457), Expect = 7.7e-42
Identity = 89/122 (72.95%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 1   MAATSKLIIIARP-LAHLRKP--HPFSSVFTLRAGHWSAYEKNPEEQICPTVVPDHVIHS 60
           MAA S LII ARP LAH R P      S+FTLRAGHWSAYEKNPEE++CPTVVPDH++HS
Sbjct: 1   MAAASNLIIAARPRLAHFRNPLRRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMLHS 60

Query: 61  LSENYWVPHPETGVFGPQTTHHSSVPNDTSAGGGGHKEGSVLELKAWFRHNGLEDSEKPH 120
           LSE+YW PHP+TGVFGP TT H+ VP+DTS  GGG KEGSVLELK WFRH  LED EKPH
Sbjct: 61  LSEDYWAPHPQTGVFGPPTTQHNPVPSDTS--GGGAKEGSVLELKVWFRHVELEDPEKPH 120

[Close]

BLAST of Lag0032301 vs. NCBI nr
Match: XP_023532525.1 (late embryogenesis abundant protein At5g17165-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179.9 bits (455), Expect = 1.3e-41
Identity = 89/122 (72.95%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 1   MAATSKLIIIARP-LAHLRKP--HPFSSVFTLRAGHWSAYEKNPEEQICPTVVPDHVIHS 60
           MAA S LII ARP LAHLR P      S+FTLRAGHWSAYEKNPEE++CPTVVPDH+IHS
Sbjct: 1   MAAASNLIIAARPRLAHLRNPLRRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMIHS 60

Query: 61  LSENYWVPHPETGVFGPQTTHHSSVPNDTSAGGGGHKEGSVLELKAWFRHNGLEDSEKPH 120
           +SE+YW PHP+TGVFGP  T H+ VP+DTSAGG   KEGSVLELK WFRH  LED EKPH
Sbjct: 61  ISEDYWAPHPQTGVFGPPITQHNPVPSDTSAGGA--KEGSVLELKVWFRHVELEDPEKPH 120

[Close]

BLAST of Lag0032301 vs. NCBI nr
Match: XP_022995249.1 (late embryogenesis abundant protein At5g17165-like [Cucurbita maxima])

HSP 1 Score: 177.9 bits (450), Expect = 5.0e-41
Identity = 88/122 (72.13%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 1   MAATSKLIIIARP-LAHLRKP--HPFSSVFTLRAGHWSAYEKNPEEQICPTVVPDHVIHS 60
           MAA S LII ARP LAHLR P      S+FTLRAGHWSAYEKNPEE++CPTVVPDH+IHS
Sbjct: 1   MAAASNLIIAARPRLAHLRNPVRRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMIHS 60

Query: 61  LSENYWVPHPETGVFGPQTTHHSSVPNDTSAGGGGHKEGSVLELKAWFRHNGLEDSEKPH 120
           +SE+YW PHP+TGVFGP  + H+ VP+DTSAGG   KEGSVLELK WFRH  LED EKPH
Sbjct: 61  ISEDYWAPHPQTGVFGPPISQHNPVPSDTSAGGA--KEGSVLELKVWFRHIELEDPEKPH 120

[Close]

BLAST of Lag0032301 vs. NCBI nr
Match: XP_022957877.1 (late embryogenesis abundant protein At5g17165-like [Cucurbita moschata])

HSP 1 Score: 167.9 bits (424), Expect = 5.2e-38
Identity = 84/114 (73.68%), Postives = 92/114 (80.70%), Query Frame = 0


Query: 1   MAATSKLIIIARP-LAHLRKP--HPFSSVFTLRAGHWSAYEKNPEEQICPTVVPDHVIHS 60
           MAA S LII ARP LAHLR P      S+FTLRAGHWSAYEKNPEE++CPTVVPDH+IHS
Sbjct: 1   MAAASNLIIAARPRLAHLRNPLRRLSPSLFTLRAGHWSAYEKNPEEEVCPTVVPDHMIHS 60

Query: 61  LSENYWVPHPETGVFGPQTTHHSSVPNDTSAGGGGHKEGSVLELKAWFRHNGLE 112
           LSE+YW PHP+TGVFGP  T H+ VP+DTSAGG   KEGSVLELK WFRH  LE
Sbjct: 61  LSEDYWAPHPQTGVFGPPITQHNPVPSDTSAGGA--KEGSVLELKVWFRHVELE 112

[Close]

BLAST of Lag0032301 vs. NCBI nr
Match: XP_038875585.1 (late embryogenesis abundant protein At5g17165-like [Benincasa hispida])

HSP 1 Score: 153.7 bits (387), Expect = 1.0e-33
Identity = 84/125 (67.20%), Postives = 91/125 (72.80%), Query Frame = 0


Query: 3   ATSKLIIIARPLAHLRKP-------HPF-SSVFTLRAGHWSAYEKNPEEQICPTVVPDHV 62
           A+S  IIIA P   L  P       H F S+ F LRA HWSAYEKNPEEQI PTVVPDHV
Sbjct: 2   ASSWRIIIASPRFLLSSPPSSLSHSHLFPSATFLLRASHWSAYEKNPEEQIWPTVVPDHV 61

Query: 63  IH-SLSENYWVPHPETGVFGPQTTHH--SSVPNDTSAGGGGHKEGSVLELKAWFRHNGLE 117
           IH ++SENYW PHPETGVFGP   H   S+VPNDTSAGG   KE SVL++KAWFRHNGLE
Sbjct: 62  IHTNISENYWAPHPETGVFGPPIAHQSTSAVPNDTSAGG---KEDSVLDIKAWFRHNGLE 121

[Close]

BLAST of Lag0032301 vs. ExPASy Swiss-Prot
Match: F4KFM8 (Late embryogenesis abundant protein At5g17165 OS=Arabidopsis thaliana OX=3702 GN=At5g17165 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.2e-18
Identity = 54/119 (45.38%), Postives = 73/119 (61.34%), Query Frame = 0


Query: 1   MAATSKLI-IIARPLAH-LRKPHPFSSVFTLRAGHWSAYEKNPEEQICPTVVPDHVIHSL 60
           MAA SK I ++ R + + +R       +FT R  H SAY+KN EE++ P+ VPD +I   
Sbjct: 1   MAAKSKNIQVVGRHIVNGVRSRAVAYGLFTSRNDHTSAYDKNVEEELQPSQVPDEMIKPD 60

Query: 61  SENYWVPHPETGVFGPQTTHHSSVPNDTSAGGGGHKEGSVLELKAWFRHNGLEDSEKPH 118
           S+ YW PHP+TGVFGP ++  S+   D   GG   +E SV+E KAWFR   LED +K H
Sbjct: 61  SDKYWSPHPQTGVFGPSSS--STNAKDEFRGG---QEDSVMEEKAWFRPTSLEDLDKTH 114

The following BLAST results are available for this feature:

BLAST of Lag0032301 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605657.1	7.7e-42	72.95	ATP-dependent DNA helicase SRS2-like protein, partial [Cucurbita argyrosperma su...	[more]
XP_023532525.1	1.3e-41	72.95	late embryogenesis abundant protein At5g17165-like [Cucurbita pepo subsp. pepo]	[more]
XP_022995249.1	5.0e-41	72.13	late embryogenesis abundant protein At5g17165-like [Cucurbita maxima]	[more]
XP_022957877.1	5.2e-38	73.68	late embryogenesis abundant protein At5g17165-like [Cucurbita moschata]	[more]
XP_038875585.1	1.0e-33	67.20	late embryogenesis abundant protein At5g17165-like [Benincasa hispida]	[more]

BLAST of Lag0032301 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4KFM8	6.2e-18	45.38	Late embryogenesis abundant protein At5g17165 OS=Arabidopsis thaliana OX=3702 GN...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..95
None	No IPR available	PANTHER	PTHR35122:SF2	OSJNBA0093F12.14 PROTEIN	coord: 17..117
IPR039291	Late embryogenesis abundant protein At5g17165-like	PANTHER	PTHR35122	OSJNBA0093F12.14 PROTEIN	coord: 17..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0032301.1	Lag0032301.1	mRNA