Lag0032298 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032298
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr11: 29871871 .. 29872425 (-)
RNA-Seq ExpressionLag0032298
SyntenyLag0032298
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTACCATCAGTTCGGACGAGGTGCGAGTGGAGATTTAGTGGTTTCTATGGGAATCCTATAGCTGACAAAAGGGTTGACTCGTGGGTGCTTTTAAAAATACTTTGTGAGATGGACCAGAATAAGCTCCCGTGGATTTTATGGGGAGACTTTAATGAGATCATGTTCAACCATGAGAAAAAGGGAGGGGCCGAGAGAAATCCAAAGCTTATGGATAACTTTGTGGAGGCTTTGGATCATTGTAATCTTAAGGACGTTGGATTTTTTGGTAATAAATTTACGTGGGCCAGGGGCAAGAAAAACGAGGCAAGAATTAGAGAAAGATTAGATAGATTTTTTGTGAACCAACCTATGGCCGACTTGTTCAAAAGCATAAAGGTAACACATCTTAAGTTCCATGGATCAGACAATAGACCAATTATGGCCATGATGACCATGGAAGAGCTTGCGGTGAGAAATTCTAAAGTGAGAAATCTGTTGAGATTTGGGGAGTCGTGGACGAGTTTGGAAGAGACCAAAGACTGTTGGGTTTTATGTCCTAAAACTCGTAGATAG

mRNA sequence

ATGCTACCATCAGTTCGGACGAGGTGCGAGTGGAGATTTAGTGGTTTCTATGGGAATCCTATAGCTGACAAAAGGGTTGACTCGTGGGTGCTTTTAAAAATACTTTGTGAGATGGACCAGAATAAGCTCCCGTGGATTTTATGGGGAGACTTTAATGAGATCATGTTCAACCATGAGAAAAAGGGAGGGGCCGAGAGAAATCCAAAGCTTATGGATAACTTTGTGGAGGCTTTGGATCATTGTAATCTTAAGGACGTTGGATTTTTTGGTAATAAATTTACGTGGGCCAGGGGCAAGAAAAACGAGGCAAGAATTAGAGAAAGATTAGATAGATTTTTTGTGAACCAACCTATGGCCGACTTGTTCAAAAGCATAAAGGTAACACATCTTAAGTTCCATGGATCAGACAATAGACCAATTATGGCCATGATGACCATGGAAGAGCTTGCGGTGAGAAATTCTAAAGTGAGAAATCTGTTGAGATTTGGGGAGTCGTGGACGAGTTTGGAAGAGACCAAAGACTGTTGGGTTTTATGTCCTAAAACTCGTAGATAG

Coding sequence (CDS)

ATGCTACCATCAGTTCGGACGAGGTGCGAGTGGAGATTTAGTGGTTTCTATGGGAATCCTATAGCTGACAAAAGGGTTGACTCGTGGGTGCTTTTAAAAATACTTTGTGAGATGGACCAGAATAAGCTCCCGTGGATTTTATGGGGAGACTTTAATGAGATCATGTTCAACCATGAGAAAAAGGGAGGGGCCGAGAGAAATCCAAAGCTTATGGATAACTTTGTGGAGGCTTTGGATCATTGTAATCTTAAGGACGTTGGATTTTTTGGTAATAAATTTACGTGGGCCAGGGGCAAGAAAAACGAGGCAAGAATTAGAGAAAGATTAGATAGATTTTTTGTGAACCAACCTATGGCCGACTTGTTCAAAAGCATAAAGGTAACACATCTTAAGTTCCATGGATCAGACAATAGACCAATTATGGCCATGATGACCATGGAAGAGCTTGCGGTGAGAAATTCTAAAGTGAGAAATCTGTTGAGATTTGGGGAGTCGTGGACGAGTTTGGAAGAGACCAAAGACTGTTGGGTTTTATGTCCTAAAACTCGTAGATAG

Protein sequence

MLPSVRTRCEWRFSGFYGNPIADKRVDSWVLLKILCEMDQNKLPWILWGDFNEIMFNHEKKGGAERNPKLMDNFVEALDHCNLKDVGFFGNKFTWARGKKNEARIRERLDRFFVNQPMADLFKSIKVTHLKFHGSDNRPIMAMMTMEELAVRNSKVRNLLRFGESWTSLEETKDCWVLCPKTRR
Homology
BLAST of Lag0032298 vs. NCBI nr
Match: XP_022155286.1 (uncharacterized protein LOC111022423 [Momordica charantia])

HSP 1 Score: 144.8 bits (364), Expect = 7.3e-31
Identity = 74/168 (44.05%), Postives = 99/168 (58.93%), Query Frame = 0

Query: 8   RCEWRFSGFYGNPIADKRVDSWVLLKILCEMDQNKLPWILWGDFNEIMFNHEKKGGAERN 67
           R  WRF+G YG+ + D R ++W L+  L  +    LPWIL GDFNEI+FN EK  G  R 
Sbjct: 6   RYNWRFTGIYGHLVQDNRWETWELIGRLHSIFD--LPWILGGDFNEILFNSEKLEGVPRR 65

Query: 68  PKLMDNFVEALDHCNLKDVGFFGNKFTWARGKKNEARIRERLDRFFVNQPMADLFKSIKV 127
             LM NF + LD C L D GF G+ FTW  G K    I ERLDRF +N  +  + +++++
Sbjct: 66  QSLMQNFKDTLDLCGLLDPGFVGDIFTWCDGHKYRQPIWERLDRFLINTAIFQIQETLEI 125

Query: 128 THLKFHGSDNRPIMA-MMTMEELAVRNSKVRNLLRFGESWTSLEETKD 175
            HL+F  SD+RPI+A  + + E  V   K R   RF E W S +E K+
Sbjct: 126 RHLEFLASDHRPILAEWLGVGEATVGRRKGRRPHRFEEQWFSFQECKE 171

BLAST of Lag0032298 vs. NCBI nr
Match: KAF4351405.1 (hypothetical protein F8388_001025, partial [Cannabis sativa])

HSP 1 Score: 142.5 bits (358), Expect = 3.6e-30
Identity = 72/165 (43.64%), Postives = 100/165 (60.61%), Query Frame = 0

Query: 11  WRFSGFYGNPIADKRVDSWVLLKILCEM-DQNKLPWILWGDFNEIMFNHEKKGGAERNPK 70
           WRF+GFYGNP A  R+DSW   ++LC +     LPWI  GDFNEI+  +EKKGG +R+  
Sbjct: 661 WRFTGFYGNPKASSRIDSW---QLLCRLKGLFDLPWICGGDFNEILSINEKKGGVDRSLS 720

Query: 71  LMDNFVEALDHCNLKDVGFFGNKFTWARGKKNEARIRERLDRFFVNQPMADLFKSIKVTH 130
            + +F +ALD C+L D+GF G  FTW   ++  A ++ERLDR+F NQ   +LF S+KV +
Sbjct: 721 AISDFQQALDKCDLVDMGFEGQCFTWLNKRQGVAHVQERLDRYFCNQEWHNLFPSVKVVN 780

Query: 131 LKFHGSDNRPIMAMMTMEELAVRNSKVRNLLRFGESWTSLEETKD 175
             F  SD+RPI A++    +  R    +   RF   W    E +D
Sbjct: 781 GDFIHSDHRPIAAILE-NVVCNRQYDKKKSFRFETHWLKDAECRD 821

BLAST of Lag0032298 vs. NCBI nr
Match: KAF4381998.1 (hypothetical protein G4B88_006630 [Cannabis sativa])

HSP 1 Score: 141.7 bits (356), Expect = 6.1e-30
Identity = 74/165 (44.85%), Postives = 98/165 (59.39%), Query Frame = 0

Query: 11  WRFSGFYGNPIADKRVDSWVLLKILCEM-DQNKLPWILWGDFNEIMFNHEKKGGAERNPK 70
           WRF+GFYGNP A  R +SW   ++LC + D   LPWI  GDFNEI+  +EKKGG++R+  
Sbjct: 542 WRFTGFYGNPKASCRSESW---RLLCRLKDLFDLPWICGGDFNEILSINEKKGGSDRSMS 601

Query: 71  LMDNFVEALDHCNLKDVGFFGNKFTWARGKKNEARIRERLDRFFVNQPMADLFKSIKVTH 130
            M  F  ALD C+L D+GF G  FTW   ++  A ++ERLDR+F NQ   DLF  +KV +
Sbjct: 602 AMTEFQNALDRCSLADLGFEGQCFTWLNKRQGGAHVQERLDRYFCNQRWHDLFPFVKVLN 661

Query: 131 LKFHGSDNRPIMAMMTMEELAVRNSKVRNLLRFGESWTSLEETKD 175
             F  SD+RPI+A +       R  K R   RF   W    E ++
Sbjct: 662 GDFLNSDHRPIVATLENVSRRQRYDKKR-CFRFETHWLKDPECQE 702

BLAST of Lag0032298 vs. NCBI nr
Match: KAF4383622.1 (hypothetical protein F8388_014122 [Cannabis sativa])

HSP 1 Score: 141.7 bits (356), Expect = 6.1e-30
Identity = 74/165 (44.85%), Postives = 98/165 (59.39%), Query Frame = 0

Query: 11  WRFSGFYGNPIADKRVDSWVLLKILCEM-DQNKLPWILWGDFNEIMFNHEKKGGAERNPK 70
           WRF+GFYGNP A  R +SW   ++LC + D   LPWI  GDFNEI+  +EKKGG++R+  
Sbjct: 566 WRFTGFYGNPKASCRSESW---RLLCRLKDLFDLPWICGGDFNEILSINEKKGGSDRSMS 625

Query: 71  LMDNFVEALDHCNLKDVGFFGNKFTWARGKKNEARIRERLDRFFVNQPMADLFKSIKVTH 130
            M  F  ALD C+L D+GF G  FTW   ++  A ++ERLDR+F NQ   DLF  +KV +
Sbjct: 626 AMTEFQNALDRCSLADLGFEGQCFTWLNKRQGGAHVQERLDRYFCNQRWHDLFPFVKVLN 685

Query: 131 LKFHGSDNRPIMAMMTMEELAVRNSKVRNLLRFGESWTSLEETKD 175
             F  SD+RPI+A +       R  K R   RF   W    E ++
Sbjct: 686 GDFLNSDHRPIVATLENVSRRQRYDKKR-CFRFETHWLKDPECQE 726

BLAST of Lag0032298 vs. NCBI nr
Match: KAF4347816.1 (hypothetical protein G4B88_012929 [Cannabis sativa])

HSP 1 Score: 141.4 bits (355), Expect = 8.0e-30
Identity = 73/161 (45.34%), Postives = 97/161 (60.25%), Query Frame = 0

Query: 11  WRFSGFYGNPIADKRVDSWVLLKILCEM-DQNKLPWILWGDFNEIMFNHEKKGGAERNPK 70
           WRF+GFYGNP A  R +SW   ++LC + D   LPWI  GDFNEI+  +EKKGG++R+  
Sbjct: 566 WRFTGFYGNPKASCRSESW---RLLCRLKDLFDLPWICGGDFNEILSINEKKGGSDRSMS 625

Query: 71  LMDNFVEALDHCNLKDVGFFGNKFTWARGKKNEARIRERLDRFFVNQPMADLFKSIKVTH 130
            M  F  ALD C+L D+GF G  FTW   ++  A ++ERLDR+F NQ   DLF  +KV +
Sbjct: 626 AMTEFQNALDRCSLADLGFEGQCFTWLNKRQGGAHVQERLDRYFCNQRWHDLFPFVKVLN 685

Query: 131 LKFHGSDNRPIMAMMTMEELAVRNSKVRNLLRFGESWTSLE 171
             F  SD+RPI+A +             N+ R   SW SL+
Sbjct: 686 GDFLNSDHRPIVATL------------ENVSRRQRSWLSLD 711

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155286.17.3e-3144.05uncharacterized protein LOC111022423 [Momordica charantia][more]
KAF4351405.13.6e-3043.64hypothetical protein F8388_001025, partial [Cannabis sativa][more]
KAF4381998.16.1e-3044.85hypothetical protein G4B88_006630 [Cannabis sativa][more]
KAF4383622.16.1e-3044.85hypothetical protein F8388_014122 [Cannabis sativa][more]
KAF4347816.18.0e-3045.34hypothetical protein G4B88_012929 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 4..144
e-value: 1.4E-15
score: 59.7
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 11..144
NoneNo IPR availablePANTHERPTHR33710BNAC02G09200D PROTEINcoord: 24..144
NoneNo IPR availablePANTHERPTHR33710:SF35SUBFAMILY NOT NAMEDcoord: 24..144

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032298.1Lag0032298.1mRNA