Lag0032263 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032263
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr11: 29077414 .. 29078821 (+)
RNA-Seq ExpressionLag0032263
SyntenyLag0032263
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAAACACGAGCAAGAAAAGAAAGAGAGAATGAGGAGGAAGAGGTTGCGATTACCCCTGAGGTACAGAAAGTAAAGGCGAAAAAGAAAAAGACCCCGGAGGAGAAAGAAGCCAAGAGAAGAAGGAGGCAACAGAGGGTTGCAGAACAAGAAGAGGTTCAGGAAGCGACGGATGATGTTGCTGCCACAGTGGTTGAAGAAGACCCGAAGGAACCAGAAGAACAGAACCCAAAGCAGACTAAGTAGAGAATTGCGGATACAGAAGAAGTTCAAGAGGAGGTTCAAGAAACACAGGCTGACGAGGTTCAAGAGGAAGAGGCAGCGGCTGTGCCTGAAAAAGAGACTGTAAGAGAGCCAGTTCAGGAGGCTCGTGTTGAGGTCGTCATGCCCGAACCCCCGAGATGTCGCCGCATTAAGCGGAAGGCTGGGCGCGTTCAAGTGATTCGGACTGATACCCCATCACCACCATCGTCGGATTCTAAGAAAGAGAAGGCAGACCGAGAGGAGCGAGAGAAAACGAAAGCTGAGGAAGAGCGGTTGCTCAAACGAAGGGTAGAAAAGGGCAAAAGTGTTGCTGAGGCATCGGAAGAACACGATGAGATGGAAGAGCCATATGATCGCTTCGTCAACAATTTTGCCAGAGCAAAATACGCTGAGCTGCTGAAAAGGGATTTTTTATTTGAGAGAGGTTTCAACGGTGATCTTCCGCATTTTCTGAGAACCGGTATTGCAGATCACGGCTGGGAGTTGTTTTGTGCGAAGCCTGAGTCTGTTAACGCGTAGACGGTGCGTGAATTTTATGCTAACATTAACAAAGAAGATGTTTTCCAGGTGATTGTTCGAGAAGTCGAGGTAGACTGGAGTCCTAGTGCTATCAACGCACTGTATAACCTTCAGAATTTCCCCCATGCGGCATATAATGAGATGGTTGTAGCGCCATCTAGTGAGCAGTTGAGTGAGGCTGTGCGGGAGGTAGGTATTGAAGGGGTACAGTGGCAGCTGTCCAAGACAGAGAAGAGGACGTTCCAGTCGGCTTATTTGAAAAGGGAAGCGAACACGTGGATGAGATTTATCAAACAAAGGATGCTTCCAACGACACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACTCGACAATCTCCAGGGAACGGGTTCTTCTAGCTTTTGAAATCTTGTGGTCTCTCAACATTGATGTAGGGAAGATCATTGCTAGTGAAATTTCGGGATGTTGGAAAAAGAAAGTGGGGAAACTGTTTTTTCGAACACAATCACGATGTTATGCAGCAGGGCAGGAGTGCCCACGGTTCCAGATGTTGGGATTGGTGCCCTAA

mRNA sequence

ATGGCGAAAACACGAGCAAGAAAAGAAAGAGAGAATGAGGAGGAAGAGGTTGCGATTACCCCTGAGGTACAGAAAGTAAAGGCGAAAAAGAAAAAGACCCCGGAGGAGAAAGAAGCCAAGAGAAGAAGGAGGCAACAGAGGGTTGCAGAACAAGAAGAGGTTCAGGAAGCGACGGATGATGTTGCTGCCACAGTGGCTGACGAGGTTCAAGAGGAAGAGGCAGCGGCTGTGCCTGAAAAAGAGACTGTAAGAGAGCCAGTTCAGGAGGCTCGTGTTGAGGTCGTCATGCCCGAACCCCCGAGATGTCGCCGCATTAAGCGGAAGGCTGGGCGCGTTCAAGTGATTCGGACTGATACCCCATCACCACCATCGTCGGATTCTAAGAAAGAGAAGGCAGACCGAGAGGAGCGAGAGAAAACGAAAGCTGAGGAAGAGCGGTTGCTCAAACGAAGGGTAGAAAAGGGCAAAAGTGTTGCTGAGGCATCGGAAGAACACGATGAGATGGAAGAGCCATATGATCGCTTCGTCAACAATTTTGCCAGAGCAAAATACGCTGAGCTGCTGAAAAGGGATTTTTTATTTGAGAGAGGTTTCAACGGTGATCTTCCGCATTTTCTGAGAACCGGTATTGCAGATCACGGCTGGGAGTTGTTTTGTGCGAAGCCTGAGTCTGTGATTGTTCGAGAAGTCGAGGTAGACTGGAGTCCTAGTGCTATCAACGCACTGTATAACCTTCAGAATTTCCCCCATGCGGCATATAATGAGATGGTTGTAGCGCCATCTAGTGAGCAGTTGAGTGAGGCTGTGCGGGAGGTAGGTATTGAAGGGGTACAGTGGCAGCTGTCCAAGACAGAGAAGAGGACGTTCCAGTCGGCTTATTTGAAAAGGGAAGCGAACACGGAACGGGTTCTTCTAGCTTTTGAAATCTTGTGGTCTCTCAACATTGATGTAGGGAAGATCATTGCTAGTGAAATTTCGGGATGTTGGAAAAAGAAAGTGGGGAAACTGTTTTTTCGAACACAATCACGATGTTATGCAGCAGGGCAGGAGTGCCCACGGTTCCAGATGTTGGGATTGGTGCCCTAA

Coding sequence (CDS)

ATGGCGAAAACACGAGCAAGAAAAGAAAGAGAGAATGAGGAGGAAGAGGTTGCGATTACCCCTGAGGTACAGAAAGTAAAGGCGAAAAAGAAAAAGACCCCGGAGGAGAAAGAAGCCAAGAGAAGAAGGAGGCAACAGAGGGTTGCAGAACAAGAAGAGGTTCAGGAAGCGACGGATGATGTTGCTGCCACAGTGGCTGACGAGGTTCAAGAGGAAGAGGCAGCGGCTGTGCCTGAAAAAGAGACTGTAAGAGAGCCAGTTCAGGAGGCTCGTGTTGAGGTCGTCATGCCCGAACCCCCGAGATGTCGCCGCATTAAGCGGAAGGCTGGGCGCGTTCAAGTGATTCGGACTGATACCCCATCACCACCATCGTCGGATTCTAAGAAAGAGAAGGCAGACCGAGAGGAGCGAGAGAAAACGAAAGCTGAGGAAGAGCGGTTGCTCAAACGAAGGGTAGAAAAGGGCAAAAGTGTTGCTGAGGCATCGGAAGAACACGATGAGATGGAAGAGCCATATGATCGCTTCGTCAACAATTTTGCCAGAGCAAAATACGCTGAGCTGCTGAAAAGGGATTTTTTATTTGAGAGAGGTTTCAACGGTGATCTTCCGCATTTTCTGAGAACCGGTATTGCAGATCACGGCTGGGAGTTGTTTTGTGCGAAGCCTGAGTCTGTGATTGTTCGAGAAGTCGAGGTAGACTGGAGTCCTAGTGCTATCAACGCACTGTATAACCTTCAGAATTTCCCCCATGCGGCATATAATGAGATGGTTGTAGCGCCATCTAGTGAGCAGTTGAGTGAGGCTGTGCGGGAGGTAGGTATTGAAGGGGTACAGTGGCAGCTGTCCAAGACAGAGAAGAGGACGTTCCAGTCGGCTTATTTGAAAAGGGAAGCGAACACGGAACGGGTTCTTCTAGCTTTTGAAATCTTGTGGTCTCTCAACATTGATGTAGGGAAGATCATTGCTAGTGAAATTTCGGGATGTTGGAAAAAGAAAGTGGGGAAACTGTTTTTTCGAACACAATCACGATGTTATGCAGCAGGGCAGGAGTGCCCACGGTTCCAGATGTTGGGATTGGTGCCCTAA

Protein sequence

MAKTRARKERENEEEEVAITPEVQKVKAKKKKTPEEKEAKRRRRQQRVAEQEEVQEATDDVAATVADEVQEEEAAAVPEKETVREPVQEARVEVVMPEPPRCRRIKRKAGRVQVIRTDTPSPPSSDSKKEKADREEREKTKAEEERLLKRRVEKGKSVAEASEEHDEMEEPYDRFVNNFARAKYAELLKRDFLFERGFNGDLPHFLRTGIADHGWELFCAKPESVIVREVEVDWSPSAINALYNLQNFPHAAYNEMVVAPSSEQLSEAVREVGIEGVQWQLSKTEKRTFQSAYLKREANTERVLLAFEILWSLNIDVGKIIASEISGCWKKKVGKLFFRTQSRCYAAGQECPRFQMLGLVP
Homology
BLAST of Lag0032263 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 68.9 bits (167), Expect = 9.9e-08
Identity = 60/213 (28.17%), Postives = 91/213 (42.72%), Query Frame = 0

Query: 174 RFVNNFARAKYA-ELLKRDFLFERGF-------NGDLPHFLRTGIADHGWELFCAKPE-- 233
           +F    A  +Y   +  R    E+GF        G LP F+   I  H W+ FCA PE  
Sbjct: 15  KFETEAAETRYENNIQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDP 74

Query: 234 ------------------SVIVREVEVDWSPSAINALYNLQNFPHAAYNEMVVAPSSEQL 293
                             +V VR V+V WS  AINA++ L + P   ++E +   +   L
Sbjct: 75  IVPLVREFYANLTDPVENTVYVRGVQVSWSEEAINAVFGLGD-PVDEHSEFIENITEHDL 134

Query: 294 SEAVREVGIEGVQWQLSKTEKRT-FQSA----------YLK---------REANTERVLL 339
              +  V + G +W +S     T  +SA          +LK         +  + +R+LL
Sbjct: 135 ITVLETVAVAGAEWNVSAQGAYTCIRSALTPAAKVWFHFLKSHLLPTTHGKTVSKDRMLL 194

BLAST of Lag0032263 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 67.8 bits (164), Expect = 2.2e-07
Identity = 60/213 (28.17%), Postives = 91/213 (42.72%), Query Frame = 0

Query: 174 RFVNNFARAKYA-ELLKRDFLFERGF-------NGDLPHFLRTGIADHGWELFCAKPE-- 233
           +F    A  +Y   +  R    E+GF        G LP F+   I  H W+ FCA PE  
Sbjct: 24  KFETEAAATRYENNIQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDP 83

Query: 234 ------------------SVIVREVEVDWSPSAINALYNLQNFPHAAYNEMVVAPSSEQL 293
                             +V VR V+V WS  AINA++ L + P   ++E +   + + L
Sbjct: 84  IVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVFGLGD-PVDEHSEFIQNITQQDL 143

Query: 294 SEAVREVGIEGVQWQLSKTEKRT-FQSA----------YLK---------REANTERVLL 339
              +  V   G +W +S     T  +SA          +LK         +  + +R+LL
Sbjct: 144 ITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLL 203

BLAST of Lag0032263 vs. NCBI nr
Match: TYH88163.1 (hypothetical protein ES332_D01G168900v1 [Gossypium tomentosum])

HSP 1 Score: 60.1 bits (144), Expect = 4.6e-05
Identity = 43/134 (32.09%), Postives = 63/134 (47.01%), Query Frame = 0

Query: 225 VIVREVEVDWSPSAINALYNLQNFPHAAYNEMVVAPSSEQLSEAVREVGIEGVQWQLSKT 284
           VIVR+ +V  +  +IN L+NL +     Y  M+   + + L + +  V   G QW + K 
Sbjct: 95  VIVRKKKVPPTSKSINDLFNLPDVEEDEYYPMINNMNWDFLQQVLDVVTNSGSQWIIRKY 154

Query: 285 EKRTFQSAYLKREANT--------------------ERVLLAFEILWSLNIDVGKIIASE 339
              + +  YLK  AN                     ER+LL + IL   +I+VGKII  E
Sbjct: 155 GSHSCRREYLKPIANVWFYFVQYSFMPISHSYTISMERMLLLYAILTEKSINVGKIILKE 214

BLAST of Lag0032263 vs. NCBI nr
Match: XP_024995361.1 (formin-like protein 3 [Cynara cardunculus var. scolymus])

HSP 1 Score: 59.3 bits (142), Expect = 7.9e-05
Identity = 75/305 (24.59%), Postives = 121/305 (39.67%), Query Frame = 0

Query: 78  PEKETVREPVQE-ARVEVVMPEPPRCRRIKRKAGRVQVIRTDTPSPPSSDSKKEKADREE 137
           P  E  RE V   A +   MP   R  RI+ +               SS  +KE ++R E
Sbjct: 217 PHLEQEREEVDTGASLRKRMPRKKRMSRIETR---------------SSKRRKEDSERSE 276

Query: 138 REKTKAEEERLLKRRVEKGKSVAEASEEHDEMEEPYDRFVNNFARAKYAELLKRDFLFER 197
            E+  +   +  +++ E+G  +           +P   F    AR  Y +  ++  + ++
Sbjct: 277 AEERGSRRRKRSEQQFEEGPGI---------FLKPKHLFSTPLARKTYLQFSEKVGVVQK 336

Query: 198 GFNGDL---PHFLRTGIADHGWELFCAKPE--------------------SVIVREVEVD 257
           GF+  L      ++  I   GWE  C  P                      + VR+  V 
Sbjct: 337 GFSQQLLLANPDIKARIDSLGWETLCDTPNQYNLSWVREFDTEVAVTDGVELRVRKTPVS 396

Query: 258 WSPSAINALYNLQNFPHAAYNEMVVAPSSEQLSEAVREVGIEGVQWQLSKTEKRTFQSAY 317
           +SP+AIN L  L    ++  + +    + E+L   + +V  EGV W   K   R  ++ Y
Sbjct: 397 YSPNAINDLLELIPPSYSKLDRLTAGCTDEELDLILAKVANEGVVWSF-KGRARLLKTQY 456

Query: 318 LKREAN--------------------TERVLLAFEILWSLNIDVGKIIASEISGCWKKKV 339
           LK EAN                     ERVL+ + IL +   DVG++I S I  C ++  
Sbjct: 457 LKPEANIWCYFMRHTIHPMSHDTNLCLERVLILYCILEARPFDVGRMICSNIKACVERTN 496

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON35554.19.9e-0828.17hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii][more]
PON46472.12.2e-0728.17hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
TYH88163.14.6e-0532.09hypothetical protein ES332_D01G168900v1 [Gossypium tomentosum][more]
XP_024995361.17.9e-0524.59formin-like protein 3 [Cynara cardunculus var. scolymus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 125..145
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..165
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..165

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032263.1Lag0032263.1mRNA