Lag0032260 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0032260
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	rho GDP-dissociation inhibitor 1-like
Location	chr11: 28924962 .. 28925611 (-)
RNA-Seq Expression	Lag0032260
Synteny	Lag0032260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCCTCTCTCCTCCTCTGAAACCCCAACACCCCTCTCTCTCTTCTTCTTCCCAAGCCAACAACCCTCCCTCCCTCTGTTTCTTGGGCAGATGGGTCCGTGAAAAGAATCGTGAAAAAAATTCTGGGGTTCGGCCAATGAAGGAGGAGAAAGAGTTAGAGGAGGAGGAAAATGAAAGGAAAATCGAATTGGGTCCTCAGTACACTTTGAAAGAACTCATCGAGAAGGACAAGGTCTTTCTCCCATTATCTCTCCTTTTAATAAACCTTCAATTTCTTTGCTTCCATGGACTGACCCTTTTGAGCTTTCACTTTCAGGATGATGAAAGTCTAATCCTTTCAATTTTCTTCAAATCCCACTAGTTTTTTTTTTTTTTTTTTTTGGTTCTTCCCATTATTGTAGATTTTGCTGTGTATGGAAAAGAATAGAACAGAACAGATGAACCTGTTTTTGTGTTTTCTTTGTTAGAAGATTTGCATTGACTTTTGGTTGTGAATTAGAAACTCTTGAGCCGGATGAGAAGATTGTGAGCCTTGCAATCAAATCATCACGCCGGCCTGACATTGTTCTTCCAGTTCCTGAAAGTGGAAATCCCAAAGGCCTTTGGTTTAGGGAGATGGGAGAGGAGAGAGATTTTTTGGGTGGGTAA

mRNA sequence

ATGCTCCTCTCTCCTCCTCTGAAACCCCAACACCCCTCTCTCTCTTCTTCTTCCCAAGCCAACAACCCTCCCTCCCTCTGTTTCTTGGGCAGATGGGTCCGTGAAAAGAATCGTGAAAAAAATTCTGGGGTTCGGCCAATGAAGGAGGAGAAAGAGTTAGAGGAGGAGGAAAATGAAAGGAAAATCGAATTGGGTCCTCAGTACACTTTGAAAGAACTCATCGAGAAGGACAAGCCGGATGAGAAGATTGTGAGCCTTGCAATCAAATCATCACGCCGGCCTGACATTGTTCTTCCAGTTCCTGAAAGTGGAAATCCCAAAGGCCTTTGGTTTAGGGAGATGGGAGAGGAGAGAGATTTTTTGGGTGGGTAA

Coding sequence (CDS)

ATGCTCCTCTCTCCTCCTCTGAAACCCCAACACCCCTCTCTCTCTTCTTCTTCCCAAGCCAACAACCCTCCCTCCCTCTGTTTCTTGGGCAGATGGGTCCGTGAAAAGAATCGTGAAAAAAATTCTGGGGTTCGGCCAATGAAGGAGGAGAAAGAGTTAGAGGAGGAGGAAAATGAAAGGAAAATCGAATTGGGTCCTCAGTACACTTTGAAAGAACTCATCGAGAAGGACAAGCCGGATGAGAAGATTGTGAGCCTTGCAATCAAATCATCACGCCGGCCTGACATTGTTCTTCCAGTTCCTGAAAGTGGAAATCCCAAAGGCCTTTGGTTTAGGGAGATGGGAGAGGAGAGAGATTTTTTGGGTGGGTAA

Protein sequence

MLLSPPLKPQHPSLSSSSQANNPPSLCFLGRWVREKNREKNSGVRPMKEEKELEEEENERKIELGPQYTLKELIEKDKPDEKIVSLAIKSSRRPDIVLPVPESGNPKGLWFREMGEERDFLGG

Homology

[Close]

BLAST of Lag0032260 vs. NCBI nr
Match: XP_022142383.1 (rho GDP-dissociation inhibitor 1-like [Momordica charantia])

HSP 1 Score: 87.4 bits (215), Expect = 9.2e-14
Identity = 52/86 (60.47%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 52  ELEEEENERKIELGPQYTLKELIEKDK--------------------------PDEKIVS 111
           E E++E+ RKIELGPQYTLKEL EKDK                          PD KIVS
Sbjct: 64  EEEDDEDGRKIELGPQYTLKELNEKDKDDESLRRWKEQLLGTVDFEAVGETLEPDVKIVS 123

[Close]

BLAST of Lag0032260 vs. NCBI nr
Match: KAE8652873.1 (hypothetical protein Csa_013012 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-13
Identity = 51/86 (59.30%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 52  ELEEEENERKIELGPQYTLKELIEKDK--------------------------PDEKIVS 111
           E E++E+ RKIELGPQYTLKEL EKDK                          PD KI+S
Sbjct: 68  EEEDDEDGRKIELGPQYTLKELNEKDKDDESLRRWKEQLLGDVDFESVGETLEPDVKILS 127

[Close]

BLAST of Lag0032260 vs. NCBI nr
Match: XP_038893727.1 (rho GDP-dissociation inhibitor 1-like [Benincasa hispida])

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-13
Identity = 51/86 (59.30%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 52  ELEEEENERKIELGPQYTLKELIEKDK--------------------------PDEKIVS 111
           E E++E+ RKIELGPQYTLKEL EKDK                          PD KI+S
Sbjct: 65  EEEDDEDGRKIELGPQYTLKELNEKDKDDESLRRWKEQLLGGVDFEAVGETLEPDVKILS 124

[Close]

BLAST of Lag0032260 vs. NCBI nr
Match: XP_004139545.1 (rho GDP-dissociation inhibitor 1 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-13
Identity = 51/86 (59.30%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 52  ELEEEENERKIELGPQYTLKELIEKDK--------------------------PDEKIVS 111
           E E++E+ RKIELGPQYTLKEL EKDK                          PD KI+S
Sbjct: 68  EEEDDEDGRKIELGPQYTLKELNEKDKDDESLRRWKEQLLGDVDFESVGETLEPDVKILS 127

[Close]

BLAST of Lag0032260 vs. NCBI nr
Match: XP_008458949.1 (PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis melo] >KAA0054334.1 rho GDP-dissociation inhibitor 1-like [Cucumis melo var. makuwa] >TYK12371.1 rho GDP-dissociation inhibitor 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-13
Identity = 51/86 (59.30%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 52  ELEEEENERKIELGPQYTLKELIEKDK--------------------------PDEKIVS 111
           E E++E+ RKIELGPQYTLKEL EKDK                          PD KI+S
Sbjct: 51  EEEDDEDGRKIELGPQYTLKELNEKDKDDESLRRWKEQLLGGVDFESVGETLEPDVKILS 110

[Close]

BLAST of Lag0032260 vs. ExPASy Swiss-Prot
Match: Q9SFC6 (Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=GDI1 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.4e-11
Identity = 40/84 (47.62%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 54  EEEENERKIELGPQYTLKELIEKDKPDE--------------------------KIVSLA 112
           EEE+++ K++LGPQYT+KE +EKDK DE                          +I SLA
Sbjct: 54  EEEDDDSKLQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIGETLDPEVRIDSLA 113

The following BLAST results are available for this feature:

BLAST of Lag0032260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142383.1	9.2e-14	60.47	rho GDP-dissociation inhibitor 1-like [Momordica charantia]	[more]
KAE8652873.1	2.0e-13	59.30	hypothetical protein Csa_013012 [Cucumis sativus]	[more]
XP_038893727.1	2.0e-13	59.30	rho GDP-dissociation inhibitor 1-like [Benincasa hispida]	[more]
XP_004139545.1	2.0e-13	59.30	rho GDP-dissociation inhibitor 1 [Cucumis sativus]	[more]
XP_008458949.1	2.0e-13	59.30	PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis melo] >KAA0054334.1 rh...	[more]

BLAST of Lag0032260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SFC6	4.4e-11	47.62	Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=GDI1 PE=1 SV...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..60
None	No IPR available	PANTHER	PTHR10980:SF50	RHO GDP-DISSOCIATION INHIBITOR 1	coord: 79..111
None	No IPR available	PANTHER	PTHR10980:SF50	RHO GDP-DISSOCIATION INHIBITOR 1	coord: 39..81
IPR000406	Rho protein GDP-dissociation inhibitor	PANTHER	PTHR10980	RHO GDP-DISSOCIATION INHIBITOR	coord: 79..111 coord: 39..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0032260.1	Lag0032260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005094	Rho GDP-dissociation inhibitor activity