Lag0032254 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0032254
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RT_RNaseH_2 domain-containing protein
Location	chr11: 28629657 .. 28630370 (-)
RNA-Seq Expression	Lag0032254
Synteny	Lag0032254

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGAGGTACCCCGTCGTCCTCGTCGCCGTCAGAATCAGAAAGTCGACCGTGTGAAGGTGGTTCAGACTGATACTCCTTCGCCGCGGACAACTGATTATGAGAAAGAGAATGCAGAGAGAAAAGAACATGAGAAAAAGAAGGCCGAAGACAAAGAAAGAGAGGAAACAGAGAAAAAAGCAGAAGAAGAAATTTTACCCAAACAAAGGGAAGACAAGGGCAAATGTATTGCTGAAGCGTAAACGAAACAAGAAGATAGTGAAACAGAGGAGCCGCGGTTACCATACAATCTCTTTATTAATAATCTTACTAGAGCAAAGTATGTCGAGATGCTAAGAAGAGACTTTTTGTTTGAACGAGGATTCGACAATGATCTGCCACGATTCTTGATGACTGGAATAGCGAACCATGGCTGGAGTCAATTATGTGCAAAGTCGAAGCTGGTCAATTCCAACATTGTTCGAGAGTTTTATGCAAATATTTATGATCAAGAGGGATTTCAGGCTATCGTCCGAGGAGTGCCCGTTGATTGGAGCCCAGGGGCTATCAATTCGTTATTCAACCTCAAGGATTTTTCGCACACAGACTTCAATGAGATGGTGGTGGCACCATCAAATGATCAATTAAATGTGGTTGTCCGAGAAGTTGGCATCGAGGGGCTCAGTGGAGACTGTCGAAGACAGAAAGGCGCACGTTTCAAGCTACTTATCTAA

mRNA sequence

ATGCCAGAGGTACCCCGTCGTCCTCGTCGCCGTCAGAATCAGAAAGTCGACCGTGTGAAGGTGGTTCAGACTGATACTCCTTCGCCGCGGACAACTGATTATGAGAAAGAGAATGCAGAGAGAAAAGAACATGAGAAAAAGAAGGCCGAAGACAAAGAAAGAGAGGAAACAGAGAAAAAAGCAGAAGAAGAAATTTTACCCAAACAAAGGGAAGACAAGGGCAAATGTATTGCTGAAGCAGCAAAGTATGTCGAGATGCTAAGAAGAGACTTTTTGTTTGAACGAGGATTCGACAATGATCTGCCACGATTCTTGATGACTGGAATAGCGAACCATGGCTGGAGTCAATTATGTGCAAAGTCGAAGCTGGTCAATTCCAACATTGTTCGAGAGTTTTATGCAAATATTTATGATCAAGAGGGATTTCAGGCTATCGTCCGAGGAGTGCCCGTTGATTGGAGCCCAGGGGCTATCAATTCGTTATTCAACCTCAAGGATTTTTCGCACACAGACTTCAATGAGATGGTGGTGGCACCATCAAATGATCAATTAAATGTGGTTGTCCGAGAAGTTGGCATCGAGGGGCTCAGTGGAGACTGTCGAAGACAGAAAGGCGCACGTTTCAAGCTACTTATCTAA

Coding sequence (CDS)

ATGCCAGAGGTACCCCGTCGTCCTCGTCGCCGTCAGAATCAGAAAGTCGACCGTGTGAAGGTGGTTCAGACTGATACTCCTTCGCCGCGGACAACTGATTATGAGAAAGAGAATGCAGAGAGAAAAGAACATGAGAAAAAGAAGGCCGAAGACAAAGAAAGAGAGGAAACAGAGAAAAAAGCAGAAGAAGAAATTTTACCCAAACAAAGGGAAGACAAGGGCAAATGTATTGCTGAAGCAGCAAAGTATGTCGAGATGCTAAGAAGAGACTTTTTGTTTGAACGAGGATTCGACAATGATCTGCCACGATTCTTGATGACTGGAATAGCGAACCATGGCTGGAGTCAATTATGTGCAAAGTCGAAGCTGGTCAATTCCAACATTGTTCGAGAGTTTTATGCAAATATTTATGATCAAGAGGGATTTCAGGCTATCGTCCGAGGAGTGCCCGTTGATTGGAGCCCAGGGGCTATCAATTCGTTATTCAACCTCAAGGATTTTTCGCACACAGACTTCAATGAGATGGTGGTGGCACCATCAAATGATCAATTAAATGTGGTTGTCCGAGAAGTTGGCATCGAGGGGCTCAGTGGAGACTGTCGAAGACAGAAAGGCGCACGTTTCAAGCTACTTATCTAA

Protein sequence

MPEVPRRPRRRQNQKVDRVKVVQTDTPSPRTTDYEKENAERKEHEKKKAEDKEREETEKKAEEEILPKQREDKGKCIAEAAKYVEMLRRDFLFERGFDNDLPRFLMTGIANHGWSQLCAKSKLVNSNIVREFYANIYDQEGFQAIVRGVPVDWSPGAINSLFNLKDFSHTDFNEMVVAPSNDQLNVVVREVGIEGLSGDCRRQKGARFKLLI

Homology

[Close]

BLAST of Lag0032254 vs. NCBI nr
Match: EXB53755.1 (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-06
Identity = 37/96 (38.54%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 102 PRFLMTGIANHGWSQLCAKSKLVNSNIVREFYANIYDQEGFQAIVRGVPVDWSPGAINSL 161
           P F+   I  HGW Q C         +VREFYAN+ D       V+ V V ++  AINS+
Sbjct: 4   PAFITRVIHQHGWRQFCQHPSNPIVPLVREFYANLLDFNQETVFVQNVKVPFTARAINSI 63

Query: 162 FNLKDF--SHTDFNEMVVAPSNDQLNVVVREVGIEG 196
           F L++    + DF   V   +++QL VV+ EV IEG
Sbjct: 64  FGLEEVVDEYVDFASEV---TDEQLEVVLAEVAIEG 96

[Close]

BLAST of Lag0032254 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 62.8 bits (151), Expect = 4.2e-06
Identity = 42/105 (40.00%), Postives = 54/105 (51.43%), Query Frame = 0


Query: 78  AEAAKYVEMLR-RDFLFERGF--DN-----DLPRFLMTGIANHGWSQLCAKSKLVNSNIV 137
           A A +Y   ++ R    E+GF  DN      LP F+   I  H W Q CA  +     +V
Sbjct: 29  AAATRYENNIQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLV 88

Query: 138 REFYANIYDQEGFQAIVRGVPVDWSPGAINSLFNLKD--FSHTDF 173
           REFYAN+ D E     VRGV V WS  AIN++F L D    H++F
Sbjct: 89  REFYANLTDPEENTVYVRGVQVSWSEEAINAVFGLGDPVDEHSEF 132

[Close]

BLAST of Lag0032254 vs. NCBI nr
Match: PON90635.1 (hypothetical protein TorRG33x02_134920 [Trema orientale])

HSP 1 Score: 62.4 bits (150), Expect = 5.5e-06
Identity = 45/128 (35.16%), Postives = 64/128 (50.00%), Query Frame = 0


Query: 78  AEAAKYVEMLRRDFL-FERGF---DND---LPRFLMTGIANHGWSQLCAKSKLVNSNIVR 137
           A  A+Y E ++   L  E+GF   +N+    P F+   I  H W   CA  +     +VR
Sbjct: 20  AAEARYEEHIKNQPLGAEKGFAWNNNEPLGQPPFIADVIIQHNWQLFCAHHEDPIVPLVR 79

Query: 138 EFYANIYDQEGFQAIVRGVPVDWSPGAINSLFNLKD--FSHTDFNEMVVAPSNDQLNVVV 197
           EFYAN+ D E     V+GV V WS  AIN+LF L D    H+ F E V   +  +L +V+
Sbjct: 80  EFYANLTDPEEDTVYVKGVQVPWSEEAINTLFGLGDPVDEHSAFVEDV---TERELLIVL 139

[Close]

BLAST of Lag0032254 vs. NCBI nr
Match: XP_017248025.1 (PREDICTED: uncharacterized protein LOC108219212 [Daucus carota subsp. sativus])

HSP 1 Score: 61.6 bits (148), Expect = 9.3e-06
Identity = 38/118 (32.20%), Postives = 61/118 (51.69%), Query Frame = 0


Query: 82  KYVEMLRRDFLFERGFDNDLPRF----LMTGIANHGWSQLCAKSKLVNSNIVREFYANIY 141
           +++ ++ +    ERGF   LP      LM  I   GW  LC   + V  +IVREFYAN  
Sbjct: 702 EFIRLMGKSITKERGF---LPSSGDGGLMLMIQARGWESLCKAPEAVPLSIVREFYANAR 761

Query: 142 DQEGFQAIVRGVPVDWSPGAINSLFNLKDFSHTDFNEMVVAPSNDQLNVVVREVGIEG 196
            ++   AIVRG+ VD++  AI  L  +++   T+ + +     N  L+ +V E+ + G
Sbjct: 762 MEKNGFAIVRGLTVDYTFEAIQKLIGVQEMQETEEDWVRKDKRNVDLDKIVNELCVPG 816

[Close]

BLAST of Lag0032254 vs. NCBI nr
Match: PON65868.1 (hypothetical protein PanWU01x14_113570 [Parasponia andersonii])

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-05
Identity = 45/132 (34.09%), Postives = 64/132 (48.48%), Query Frame = 0


Query: 73  KGKCIAEAAKYVEMLR-RDFLFERGF--DN----DLPRFLMTGIANHGWSQLCAKSKLVN 132
           K K  A   +Y E ++ R    E+GF  DN    + P F+   I  H W   CA  +   
Sbjct: 15  KFKSEAAETRYEENIQNRPLSAEKGFVGDNSKPLEKPPFIADVITQHNWQLFCAHPEDPI 74

Query: 133 SNIVREFYANIYDQEGFQAIVRGVPVDWSPGAINSLFNLKD--FSHTDFNEMVVAPSNDQ 192
             +VREFYAN+ + +     VRGV V  S  AIN+++ L D    H++F E +  P   +
Sbjct: 75  VPLVREFYANMTNPDDDTVYVRGVQVLLSSEAINTIYGLGDPIDEHSEFVEAITEP---E 134

Query: 193 LNVVVREVGIEG 196
           L  V+  V I G
Sbjct: 135 LATVLETVAIAG 143

[Close]

BLAST of Lag0032254 vs. ExPASy TrEMBL
Match: W9QTD9 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022412 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.0e-07
Identity = 37/96 (38.54%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 102 PRFLMTGIANHGWSQLCAKSKLVNSNIVREFYANIYDQEGFQAIVRGVPVDWSPGAINSL 161
           P F+   I  HGW Q C         +VREFYAN+ D       V+ V V ++  AINS+
Sbjct: 4   PAFITRVIHQHGWRQFCQHPSNPIVPLVREFYANLLDFNQETVFVQNVKVPFTARAINSI 63

Query: 162 FNLKDF--SHTDFNEMVVAPSNDQLNVVVREVGIEG 196
           F L++    + DF   V   +++QL VV+ EV IEG
Sbjct: 64  FGLEEVVDEYVDFASEV---TDEQLEVVLAEVAIEG 96

[Close]

BLAST of Lag0032254 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.0e-06
Identity = 42/105 (40.00%), Postives = 54/105 (51.43%), Query Frame = 0


Query: 78  AEAAKYVEMLR-RDFLFERGF--DN-----DLPRFLMTGIANHGWSQLCAKSKLVNSNIV 137
           A A +Y   ++ R    E+GF  DN      LP F+   I  H W Q CA  +     +V
Sbjct: 29  AAATRYENNIQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDPIVPLV 88

Query: 138 REFYANIYDQEGFQAIVRGVPVDWSPGAINSLFNLKD--FSHTDF 173
           REFYAN+ D E     VRGV V WS  AIN++F L D    H++F
Sbjct: 89  REFYANLTDPEENTVYVRGVQVSWSEEAINAVFGLGDPVDEHSEF 132

[Close]

BLAST of Lag0032254 vs. ExPASy TrEMBL
Match: A0A2P5EYL5 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_134920 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.6e-06
Identity = 45/128 (35.16%), Postives = 64/128 (50.00%), Query Frame = 0


Query: 78  AEAAKYVEMLRRDFL-FERGF---DND---LPRFLMTGIANHGWSQLCAKSKLVNSNIVR 137
           A  A+Y E ++   L  E+GF   +N+    P F+   I  H W   CA  +     +VR
Sbjct: 20  AAEARYEEHIKNQPLGAEKGFAWNNNEPLGQPPFIADVIIQHNWQLFCAHHEDPIVPLVR 79

Query: 138 EFYANIYDQEGFQAIVRGVPVDWSPGAINSLFNLKD--FSHTDFNEMVVAPSNDQLNVVV 197
           EFYAN+ D E     V+GV V WS  AIN+LF L D    H+ F E V   +  +L +V+
Sbjct: 80  EFYANLTDPEEDTVYVKGVQVPWSEEAINTLFGLGDPVDEHSAFVEDV---TERELLIVL 139

[Close]

BLAST of Lag0032254 vs. ExPASy TrEMBL
Match: A0A2P5CXV1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113570 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.7e-06
Identity = 45/132 (34.09%), Postives = 64/132 (48.48%), Query Frame = 0


Query: 73  KGKCIAEAAKYVEMLR-RDFLFERGF--DN----DLPRFLMTGIANHGWSQLCAKSKLVN 132
           K K  A   +Y E ++ R    E+GF  DN    + P F+   I  H W   CA  +   
Sbjct: 15  KFKSEAAETRYEENIQNRPLSAEKGFVGDNSKPLEKPPFIADVITQHNWQLFCAHPEDPI 74

Query: 133 SNIVREFYANIYDQEGFQAIVRGVPVDWSPGAINSLFNLKD--FSHTDFNEMVVAPSNDQ 192
             +VREFYAN+ + +     VRGV V  S  AIN+++ L D    H++F E +  P   +
Sbjct: 75  VPLVREFYANMTNPDDDTVYVRGVQVLLSSEAINTIYGLGDPIDEHSEFVEAITEP---E 134

Query: 193 LNVVVREVGIEG 196
           L  V+  V I G
Sbjct: 135 LATVLETVAIAG 143

[Close]

BLAST of Lag0032254 vs. ExPASy TrEMBL
Match: A0A2P5DAQ2 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_080440 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-05
Identity = 34/111 (30.63%), Postives = 57/111 (51.35%), Query Frame = 0


Query: 87  LRRDFLFERGFDNDLPRFLMTGIANHGWSQLCAKSKLVNSNIVREFYANIYDQEGFQAIV 146
           + ++F+++     + P F+   I  H W   CA  +     +VREFY N+ + +     +
Sbjct: 66  VEKEFVWDNSKPLEQPPFIADVIIQHNWQLFCAHPEDPIVPLVREFYTNMTNPDDDTVYI 125

Query: 147 RGVPVDWSPGAINSLFNLKD--FSHTDFNEMVVAPSNDQLNVVVREVGIEG 196
           RGV V  S  AIN++F+L D    H++F E +  P   +L +V+  V I G
Sbjct: 126 RGVQVPLSVEAINTIFSLGDPIDEHSEFVEDITKP---ELVIVLETVAIVG 173

The following BLAST results are available for this feature:

BLAST of Lag0032254 vs. NCBI nr


Match Name	E-value	Identity	Description
EXB53755.1	1.4e-06	38.54	hypothetical protein L484_022412 [Morus notabilis]	[more]
PON46472.1	4.2e-06	40.00	hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]	[more]
PON90635.1	5.5e-06	35.16	hypothetical protein TorRG33x02_134920 [Trema orientale]	[more]
XP_017248025.1	9.3e-06	32.20	PREDICTED: uncharacterized protein LOC108219212 [Daucus carota subsp. sativus]	[more]
PON65868.1	1.6e-05	34.09	hypothetical protein PanWU01x14_113570 [Parasponia andersonii]	[more]

BLAST of Lag0032254 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0032254 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
W9QTD9	7.0e-07	38.54	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022412 PE=4 SV=1	[more]
A0A2P5BCG4	2.0e-06	40.00	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A2P5EYL5	2.6e-06	35.16	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_134920 PE=4 SV...	[more]
A0A2P5CXV1	7.7e-06	34.09	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113570 PE...	[more]
A0A2P5DAQ2	1.7e-05	30.63	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_080440 PE...	[more]

BLAST of Lag0032254 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 32..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0032254.1	Lag0032254.1	mRNA