Lag0032248 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0032248
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Location	chr11: 28485532 .. 28486147 (+)
RNA-Seq Expression	Lag0032248
Synteny	Lag0032248

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGAACCCCTGCAGGGCCGGAACAGAGCATCTCTTCCCGAGTCTGGAGACAGAGCCGGCCACCTAGTTCAAGTCATGGACTTTCTCGGCCAGGACCAGTCGCAGGAGATGATGGTTGTAATTCCCTCGGCGGTGAGAATTTGGCTATGGAGACTGGAGAATTGGAGGTGTTTGAGGTGTGGAGGTGGATGGCTCGAGAAATGACATTGGCGATTTCAAAGGAAAGAATGTGATTGTGGCAGTGAGATTTGGAGGCTTGTAGGGAAGATTGGAACTTGGGCTGCTCCACATTTTGAGAGTTCTCAAAGGAATGAATCCATGGTAGTTGGATGGGAAATTCTGAAATCATGGAGAATGAAGGGAGGAATTTGTACAGTGTGCCTAAATTTATGTGAAGAATCATCCAATTTTTAAGAAATTTGGGAATGACCATCTGATTTTTAAGAAATTTGGGAATGTGAAGGTCATTACTAAGGCTAATCTTGTTACCTACCGTGGCCCGACTATGGTGGCCAACACATTGCACGCAGCAGAGGTGAGGAGCTCCGGCGGCGACGGGAGGAGATTCGGCGGCGGGGAGAAGAAGAAAGAGAAGGTGGGGGCGACGAGGTGA

mRNA sequence

ATGCTCGAACCCCTGCAGGGCCGGAACAGAGCATCTCTTCCCGAGTCTGGAGACAGAGCCGGCCACCTAGTTCAAGTCATGGACTTTCTCGGCCAGGACCAGTCGCAGGAGATGATGGTTGTAATTCCCTCGGCGGTGAGAATTTGGCTATGGAGACTGGAGAATTGGAGTGAGATTTGGAGGCTTGTAGGGAAGATTGGAACTTGGGCTGCTCCACATTTTGAGAGTTCTCAAAGGAATGAATCCATGGTCATTACTAAGGCTAATCTTGTTACCTACCGTGGCCCGACTATGGTGGCCAACACATTGCACGCAGCAGAGGTGAGGAGCTCCGGCGGCGACGGGAGGAGATTCGGCGGCGGGGAGAAGAAGAAAGAGAAGGTGGGGGCGACGAGGTGA

Coding sequence (CDS)

ATGCTCGAACCCCTGCAGGGCCGGAACAGAGCATCTCTTCCCGAGTCTGGAGACAGAGCCGGCCACCTAGTTCAAGTCATGGACTTTCTCGGCCAGGACCAGTCGCAGGAGATGATGGTTGTAATTCCCTCGGCGGTGAGAATTTGGCTATGGAGACTGGAGAATTGGAGTGAGATTTGGAGGCTTGTAGGGAAGATTGGAACTTGGGCTGCTCCACATTTTGAGAGTTCTCAAAGGAATGAATCCATGGTCATTACTAAGGCTAATCTTGTTACCTACCGTGGCCCGACTATGGTGGCCAACACATTGCACGCAGCAGAGGTGAGGAGCTCCGGCGGCGACGGGAGGAGATTCGGCGGCGGGGAGAAGAAGAAAGAGAAGGTGGGGGCGACGAGGTGA

Protein sequence

MLEPLQGRNRASLPESGDRAGHLVQVMDFLGQDQSQEMMVVIPSAVRIWLWRLENWSEIWRLVGKIGTWAAPHFESSQRNESMVITKANLVTYRGPTMVANTLHAAEVRSSGGDGRRFGGGEKKKEKVGATR

Homology

[Close]

BLAST of Lag0032248 vs. ExPASy Swiss-Prot
Match: Q9FLD7 (Beta-glucuronosyltransferase GlcAT14A OS=Arabidopsis thaliana OX=3702 GN=GLCAT14A PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.3e-04
Identity = 21/25 (84.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 84  VITKANLVTYRGPTMVANTLHAAEV 109
           +I KANLVTYRGPTMVANTLHAA +
Sbjct: 163 MIEKANLVTYRGPTMVANTLHAAAI 187

[Close]

BLAST of Lag0032248 vs. ExPASy Swiss-Prot
Match: Q9LFQ0 (Beta-glucuronosyltransferase GlcAT14B OS=Arabidopsis thaliana OX=3702 GN=GLCAT14B PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.6e-04
Identity = 23/32 (71.88%), Postives = 25/32 (78.12%), Query Frame = 0


Query: 84  VITKANLVTYRGPTMVANTLHAAEV-RSSGGD 115
           +I KAN VTYRGPTMVANTLHAA +    GGD
Sbjct: 150 MIVKANFVTYRGPTMVANTLHAAAILLREGGD 181

The following BLAST results are available for this feature:

BLAST of Lag0032248 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0032248 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FLD7	3.3e-04	84.00	Beta-glucuronosyltransferase GlcAT14A OS=Arabidopsis thaliana OX=3702 GN=GLCAT14...	[more]
Q9LFQ0	5.6e-04	71.88	Beta-glucuronosyltransferase GlcAT14B OS=Arabidopsis thaliana OX=3702 GN=GLCAT14...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0032248.1	Lag0032248.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015020	glucuronosyltransferase activity