Lag0032246 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032246
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Locationchr11: 28391639 .. 28392055 (-)
RNA-Seq ExpressionLag0032246
SyntenyLag0032246
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCGTTAACCAATGCGCTGAACAAGTTGACTTCATTTGAGGTGGTCAAATCCATTTCCACCTTAGCTGAAGGATATTCGAAGAAAGAAGGTCAAGATATGGAAGAAGTCCAGTACATAGGAAACAAACCATTTACTCAAGGAGTATCGAACTTCTACCACCCCAGTCTGCGCAATCACGAGAACTTCTCATATTCGAATATGAAGAATGTTTTGCAGCCACCGCCAGGTTTTGCATCATCCAGTACGCCTGAAAAAAAGAATAACCTGGAGGAGATGGTGACTTTGTTTATTAAAGAACAAAAAGTGTTAAACGTGAATCTCCAGATGAGAGTAAATAACCACCACACAGCTCTGAAAAACATGGAAGTGCAAATAGGACAGATCGCTTCAGCGGTGAATGCCCTTCAATAG

mRNA sequence

ATGGCATCGTTAACCAATGCGCTGAACAAGTTGACTTCATTTGAGGTGGTCAAATCCATTTCCACCTTAGCTGAAGGATATTCGAAGAAAGAAGGTCAAGATATGGAAGAAGTCCAGTACATAGGAAACAAACCATTTACTCAAGGAGTATCGAACTTCTACCACCCCAGTCTGCGCAATCACGAGAACTTCTCATATTCGAATATGAAGAATGTTTTGCAGCCACCGCCAGGTTTTGCATCATCCAGTACGCCTGAAAAAAAGAATAACCTGGAGGAGATGGTGACTTTGTTTATTAAAGAACAAAAAGTGTTAAACGTGAATCTCCAGATGAGAGTAAATAACCACCACACAGCTCTGAAAAACATGGAAGTGCAAATAGGACAGATCGCTTCAGCGGTGAATGCCCTTCAATAG

Coding sequence (CDS)

ATGGCATCGTTAACCAATGCGCTGAACAAGTTGACTTCATTTGAGGTGGTCAAATCCATTTCCACCTTAGCTGAAGGATATTCGAAGAAAGAAGGTCAAGATATGGAAGAAGTCCAGTACATAGGAAACAAACCATTTACTCAAGGAGTATCGAACTTCTACCACCCCAGTCTGCGCAATCACGAGAACTTCTCATATTCGAATATGAAGAATGTTTTGCAGCCACCGCCAGGTTTTGCATCATCCAGTACGCCTGAAAAAAAGAATAACCTGGAGGAGATGGTGACTTTGTTTATTAAAGAACAAAAAGTGTTAAACGTGAATCTCCAGATGAGAGTAAATAACCACCACACAGCTCTGAAAAACATGGAAGTGCAAATAGGACAGATCGCTTCAGCGGTGAATGCCCTTCAATAG

Protein sequence

MASLTNALNKLTSFEVVKSISTLAEGYSKKEGQDMEEVQYIGNKPFTQGVSNFYHPSLRNHENFSYSNMKNVLQPPPGFASSSTPEKKNNLEEMVTLFIKEQKVLNVNLQMRVNNHHTALKNMEVQIGQIASAVNALQ
Homology
BLAST of Lag0032246 vs. NCBI nr
Match: XP_030970157.1 (uncharacterized protein LOC115990464 [Quercus lobata])

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-16
Identity = 61/150 (40.67%), Postives = 89/150 (59.33%), Query Frame = 0

Query: 1   MASLTNALNKLTSFEVVKSISTLAEGYSKKEGQDM--EEVQYIGNKPFT---QGVSNFYH 60
           +ASL++ ++ LT+  + +S   +A         ++  E+VQYI N+ +      + N+YH
Sbjct: 244 VASLSHQVSTLTTQRIPQSAEYVAVSSMTVPMNEVSQEQVQYINNRNYNYRGNPMPNYYH 303

Query: 61  PSLRNHENFSYSNMKNVLQPPPGFASSSTPEKKNNLEEMVTLFIKEQKVLNV-------N 120
           P LRNHENFSY N KNVLQPPPGF  S   EKK +LE+ +  F++E K           N
Sbjct: 304 PGLRNHENFSYGNTKNVLQPPPGF-DSQPSEKKMSLEDAMVSFVEETKARFKKSDSRLDN 363

Query: 121 LQMRVNNHHTALKNMEVQIGQIASAVNALQ 139
           ++   NN    +KN+EVQIGQ+A+ +NA Q
Sbjct: 364 IETHCNNMAATMKNLEVQIGQLATTINAQQ 392

BLAST of Lag0032246 vs. NCBI nr
Match: XP_023929660.1 (uncharacterized protein LOC112040975 [Quercus suber])

HSP 1 Score: 95.5 bits (236), Expect = 3.8e-16
Identity = 60/150 (40.00%), Postives = 87/150 (58.00%), Query Frame = 0

Query: 1   MASLTNALNKLTSFEVVKSISTLAEGYS--KKEGQDMEEVQYIGNKPFT---QGVSNFYH 60
           +ASL++ ++ LT+  + +S+  +A             E VQYI N+ +      + N+YH
Sbjct: 244 VASLSHQVSALTTQRIPQSVEYVAASSMTVPMNEASQEHVQYINNRNYNYHGNPMPNYYH 303

Query: 61  PSLRNHENFSYSNMKNVLQPPPGFASSSTPEKKNNLEEMVTLFIKEQKV-------LNVN 120
           P LRNHENFSY N KNVLQPPPGF  S   EKK +LE+ +  F++E K           N
Sbjct: 304 PGLRNHENFSYGNTKNVLQPPPGF-DSQPSEKKMSLEDAMVSFVEETKARFRKSDSQLDN 363

Query: 121 LQMRVNNHHTALKNMEVQIGQIASAVNALQ 139
           ++   +N    +KN+EVQIGQ+A+ +NA Q
Sbjct: 364 IETHCSNMGAIMKNLEVQIGQLATTINAQQ 392

BLAST of Lag0032246 vs. NCBI nr
Match: XP_023903214.1 (uncharacterized protein LOC112015077 [Quercus suber])

HSP 1 Score: 94.4 bits (233), Expect = 8.4e-16
Identity = 60/150 (40.00%), Postives = 87/150 (58.00%), Query Frame = 0

Query: 1   MASLTNALNKLTSFEVVKSISTLAEGYS--KKEGQDMEEVQYIGNKPFT---QGVSNFYH 60
           +ASL++ ++ L++  + +S   +A             E+VQYI N+ +      + N+YH
Sbjct: 244 VASLSHQVSALSTQRIPQSAEYVAASSMTVPMNEASQEQVQYINNRNYNYRGNPMPNYYH 303

Query: 61  PSLRNHENFSYSNMKNVLQPPPGFASSSTPEKKNNLEEMVTLFIKEQKVLNVNLQMRVNN 120
           P LRNHENFSY N KNVLQPPPGF  S   EKK +LE+ +  F++E K        R++N
Sbjct: 304 PGLRNHENFSYGNTKNVLQPPPGF-DSQPSEKKMSLEDAMVSFVEETKARFKKSDSRLDN 363

Query: 121 HHT-------ALKNMEVQIGQIASAVNALQ 139
             T        +KN+EVQIGQ+A+ +NA Q
Sbjct: 364 IETHCSNMGATMKNLEVQIGQLATTINAQQ 392

BLAST of Lag0032246 vs. NCBI nr
Match: XP_023874613.1 (uncharacterized protein LOC111987139 [Quercus suber])

HSP 1 Score: 94.4 bits (233), Expect = 8.4e-16
Identity = 59/150 (39.33%), Postives = 86/150 (57.33%), Query Frame = 0

Query: 1   MASLTNALNKLTSFEVVKSISTLAEGYS--KKEGQDMEEVQYIGNKPFT---QGVSNFYH 60
           +ASL++ ++ LT+  + +    +A             E+VQYI N+ +      + N+YH
Sbjct: 244 VASLSHQVSALTTQRIPQGAEYVAASSMTVPMNEASQEQVQYINNRNYNYRGNPMPNYYH 303

Query: 61  PSLRNHENFSYSNMKNVLQPPPGFASSSTPEKKNNLEEMVTLFIKEQKVLNV-------N 120
           P LRNHENFSY N KNVLQPPPGF  S   EKK +LE+ +  F++E K           N
Sbjct: 304 PGLRNHENFSYGNTKNVLQPPPGF-DSQPSEKKMSLEDAMVSFVEETKATFKKSDSQLDN 363

Query: 121 LQMRVNNHHTALKNMEVQIGQIASAVNALQ 139
           ++   +N    +KN+EVQIGQ+A+ +NA Q
Sbjct: 364 IETHCSNMGATMKNLEVQIGQLATTINAQQ 392

BLAST of Lag0032246 vs. NCBI nr
Match: XP_030969898.1 (uncharacterized protein LOC115990189 [Quercus lobata])

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-15
Identity = 61/150 (40.67%), Postives = 86/150 (57.33%), Query Frame = 0

Query: 1   MASLTNALNKLTSFEVVKSISTLAEGYS--KKEGQDMEEVQYIGNKPFT---QGVSNFYH 60
           +ASL+  ++ LT+  + +S   +A             E+VQYI N+ +      + N+YH
Sbjct: 191 VASLSYQVSTLTTQRIPQSAEYVAASSMTVPMNEASQEQVQYINNRNYNYRGNPMPNYYH 250

Query: 61  PSLRNHENFSYSNMKNVLQPPPGFASSSTPEKKNNLEEMVTLFIKEQKVLNVNLQMRVNN 120
           P LRNHENFSY N KNVLQPPPGF  S   EKK +LE+ +  F++E K        R++N
Sbjct: 251 PRLRNHENFSYGNTKNVLQPPPGF-DSQPSEKKMSLEDAMISFVEETKARFKKSDSRLDN 310

Query: 121 HHT-------ALKNMEVQIGQIASAVNALQ 139
             T        +KN+EVQIGQ+A+ +NA Q
Sbjct: 311 IETHCSNMGATMKNLEVQIGQLATTINAQQ 339

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030970157.11.0e-1640.67uncharacterized protein LOC115990464 [Quercus lobata][more]
XP_023929660.13.8e-1640.00uncharacterized protein LOC112040975 [Quercus suber][more]
XP_023903214.18.4e-1640.00uncharacterized protein LOC112015077 [Quercus suber][more]
XP_023874613.18.4e-1639.33uncharacterized protein LOC111987139 [Quercus suber][more]
XP_030969898.11.1e-1540.67uncharacterized protein LOC115990189 [Quercus lobata][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032246.1Lag0032246.1mRNA