Lag0032243 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032243
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr11: 28211233 .. 28211864 (+)
RNA-Seq ExpressionLag0032243
SyntenyLag0032243
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAAACGAGAGCAAGAAAAGAGAGAGATAATGAGGAAGAAGAGGTACTTGTTACCCCTGAGGCACAGAAAGTGAAAATGAAGAAGAAGAAGACATCGGAGGAGAAAGAAGCTAAAAGAAGGAAAAGGCAACAACGAAAATAATAACTGAGTCGAGAGTTGTACAGAAGGTTGTGGAAGATGTTGTTGCCACAGTAGTTGAAGAAGACCCGAAGGAACCAGAAGAACAAAATCCAGAGCAGTTAAGTGATGCTGTGAGGGAAGTTGGTGTTGAGGGGGCACAGTGGAGGCTTTCAAAAACTCTGAAGAGGACGTTTCAGTCAGCCTATTTGAAGAAGGAAGCAAATACATGGATGGGGTTTATCAAACAAAGGTTGCTTCCAATGACTCATGACTCGAAGGTTTCAAGGGAACGAGTTCTTCTAGCTTTCGTGATTTTGAGGTCTCTCAGCATTGATGTAGGAAAGATTATTGCTAGTGAAATATCTGGTTGCTGGAAAAAGAAAGTGGGGAAATTGTTTTTCCCGAATACGATCACAATGCTTTGCAAGCGAGCAGGGGTTCTGGAGAATGAAGGAGATGTCACACTATTTGACAAGGGAATCATTGATACGCCTAACTTGGCGTAG

mRNA sequence

ATGGCGAAAACGAGAGCAAGAAAAGAGAGAGATAATGAGGAAGAAGAGAAGGTTGTGGAAGATGTTGTTGCCACAGTAGTTGAAGAAGACCCGAAGGAACCAGAAGAACAAAATCCAGAGCAGTTAAGTGATGCTGTGAGGGAAGTTGGTGTTGAGGGGGCACAGTGGAGGCTTTCAAAAACTCTGAAGAGGACGTTTCAGTCAGCCTATTTGAAGAAGGAAGCAAATACATGGATGGGGTTTATCAAACAAAGGTTGCTTCCAATGACTCATGACTCGAAGGTTTCAAGGGAACGAGTTCTTCTAGCTTTCGTGATTTTGAGGTCTCTCAGCATTGATGTAGGAAAGATTATTGCTAGTGAAATATCTGGTTGCTGGAAAAAGAAAGTGGGGAAATTGTTTTTCCCGAATACGATCACAATGCTTTGCAAGCGAGCAGGGGTTCTGGAGAATGAAGGAGATGTCACACTATTTGACAAGGGAATCATTGATACGCCTAACTTGGCGTAG

Coding sequence (CDS)

ATGGCGAAAACGAGAGCAAGAAAAGAGAGAGATAATGAGGAAGAAGAGAAGGTTGTGGAAGATGTTGTTGCCACAGTAGTTGAAGAAGACCCGAAGGAACCAGAAGAACAAAATCCAGAGCAGTTAAGTGATGCTGTGAGGGAAGTTGGTGTTGAGGGGGCACAGTGGAGGCTTTCAAAAACTCTGAAGAGGACGTTTCAGTCAGCCTATTTGAAGAAGGAAGCAAATACATGGATGGGGTTTATCAAACAAAGGTTGCTTCCAATGACTCATGACTCGAAGGTTTCAAGGGAACGAGTTCTTCTAGCTTTCGTGATTTTGAGGTCTCTCAGCATTGATGTAGGAAAGATTATTGCTAGTGAAATATCTGGTTGCTGGAAAAAGAAAGTGGGGAAATTGTTTTTCCCGAATACGATCACAATGCTTTGCAAGCGAGCAGGGGTTCTGGAGAATGAAGGAGATGTCACACTATTTGACAAGGGAATCATTGATACGCCTAACTTGGCGTAG

Protein sequence

MAKTRARKERDNEEEEKVVEDVVATVVEEDPKEPEEQNPEQLSDAVREVGVEGAQWRLSKTLKRTFQSAYLKKEANTWMGFIKQRLLPMTHDSKVSRERVLLAFVILRSLSIDVGKIIASEISGCWKKKVGKLFFPNTITMLCKRAGVLENEGDVTLFDKGIIDTPNLA
Homology
BLAST of Lag0032243 vs. NCBI nr
Match: XP_024971944.1 (uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus])

HSP 1 Score: 91.3 bits (225), Expect = 8.8e-15
Identity = 45/118 (38.14%), Postives = 73/118 (61.86%), Query Frame = 0

Query: 41  QLSDAVREVGVEGAQWRL-SKTLKRTFQSAYLKKEANTWMGFIKQRLLPMTHDSKVSRER 100
           +L +  RE+G  G +W   S  + RT++++ LK  AN W+ FI+  L P THDS +S E+
Sbjct: 302 KLEEIGRELGKAGIRWDAHSNYMLRTYRASNLKPNANVWINFIRYSLNPTTHDSSISVEK 361

Query: 101 VLLAFVILRSLSIDVGKIIASEISGCWKKKVGKLFFPNTITMLCKRAGVLENEGDVTL 158
           ++L + ++   +I+VGK++   I  C K++ GKLFFP+ I  L  +AGV E   D+ +
Sbjct: 362 IILLYCVVTGRTINVGKVVEKAILYCSKRRQGKLFFPSLIHKLLMQAGVPEYTDDLVI 419

BLAST of Lag0032243 vs. NCBI nr
Match: XP_024995361.1 (formin-like protein 3 [Cynara cardunculus var. scolymus])

HSP 1 Score: 88.2 bits (217), Expect = 7.4e-14
Identity = 49/129 (37.98%), Postives = 72/129 (55.81%), Query Frame = 0

Query: 40  EQLSDAVREVGVEGAQWRLSKTLKRTFQSAYLKKEANTWMGFIKQRLLPMTHDSKVSRER 99
           E+L   + +V  EG  W   K   R  ++ YLK EAN W  F++  + PM+HD+ +  ER
Sbjct: 402 EELDLILAKVANEGVVWSF-KGRARLLKTQYLKPEANIWCYFMRHTIHPMSHDTNLCLER 461

Query: 100 VLLAFVILRSLSIDVGKIIASEISGCWKKKVGKLFFPNTITMLCKRAGVLENEGDVTLFD 159
           VL+ + IL +   DVG++I S I  C ++  GKL +P+ I  L ++A VL    DV   +
Sbjct: 462 VLILYCILEARPFDVGRMICSNIKACVERTNGKLLYPSLIHRLMQKAQVLALPKDVMSME 521

Query: 160 KGIIDTPNL 169
           K  ID  NL
Sbjct: 522 KTSIDKKNL 529

BLAST of Lag0032243 vs. NCBI nr
Match: TYH88163.1 (hypothetical protein ES332_D01G168900v1 [Gossypium tomentosum])

HSP 1 Score: 86.3 bits (212), Expect = 2.8e-13
Identity = 50/124 (40.32%), Postives = 69/124 (55.65%), Query Frame = 0

Query: 27  VEEDPKEP--EEQNPEQLSDAVREVGVEGAQWRLSKTLKRTFQSAYLKKEANTWMGFIKQ 86
           VEED   P     N + L   +  V   G+QW + K    + +  YLK  AN W  F++ 
Sbjct: 118 VEEDEYYPMINNMNWDFLQQVLDVVTNSGSQWIIRKYGSHSCRREYLKPIANVWFYFVQY 177

Query: 87  RLLPMTHDSKVSRERVLLAFVILRSLSIDVGKIIASEISGCWKKKVGKLFFPNTITMLCK 146
             +P++H   +S ER+LL + IL   SI+VGKII  EI  C KKK G ++FP+ IT LC 
Sbjct: 178 SFMPISHSYTISMERMLLLYAILTEKSINVGKIILKEIHNCAKKKAGSVYFPSLITSLCL 237

Query: 147 RAGV 149
           +A V
Sbjct: 238 KACV 241

BLAST of Lag0032243 vs. NCBI nr
Match: PON78020.1 (hypothetical protein PanWU01x14_023740 [Parasponia andersonii])

HSP 1 Score: 84.7 bits (208), Expect = 8.2e-13
Identity = 50/126 (39.68%), Postives = 68/126 (53.97%), Query Frame = 0

Query: 27  VEEDPKEPEEQNPEQLSDAVREVGVEGAQWRLSKTLKRTFQSAYLKKEANTWMGFIKQRL 86
           V+E  +  E     +L   +  V   GA+W +S     T   + L   A  W  F+K RL
Sbjct: 56  VDEHSEFIENITEPELITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRL 115

Query: 87  LPMTHDSKVSRERVLLAFVILRSLSIDVGKIIASEISGCWKKKVGKLFFPNTITMLCKRA 146
           LP TH   VS++R+LL   +L   SI+VG++I SEI  C  +K G LFFP+ IT LC+ A
Sbjct: 116 LPTTHGKIVSKDRMLLLHSMLNGKSINVGRMIHSEIRACAAQKTGALFFPSLITRLCRNA 175

Query: 147 GVLENE 153
             L NE
Sbjct: 176 PFLVNE 181

BLAST of Lag0032243 vs. NCBI nr
Match: TYI22425.1 (hypothetical protein ES332_A06G102500v1 [Gossypium tomentosum])

HSP 1 Score: 84.7 bits (208), Expect = 8.2e-13
Identity = 50/131 (38.17%), Postives = 71/131 (54.20%), Query Frame = 0

Query: 27  VEEDPKEPEEQN-----PEQLSDAVREVGVEGAQWRLSKTLKRTFQSAYLKKEANTWMGF 86
           VEED   P   N      +Q+ D +  +   G+QW + K    + Q  YLK  A  W  F
Sbjct: 69  VEEDEYYPMMNNINWDFLQQVLDVLTNL---GSQWSIRKYGSHSCQREYLKPVAKVWFHF 128

Query: 87  IKQRLLPMTHDSKVSRERVLLAFVILRSLSIDVGKIIASEISGCWKKKVGKLFFPNTITM 146
           ++   +P++H S +  E++L  +VIL   SI+VGKII  EI  C KKK+G  +FP+ IT 
Sbjct: 129 VRNSFMPISHSSTILMEQMLFLYVILTENSINVGKIILKEIHDCAKKKIGSDYFPSLITS 188

Query: 147 LCKRAGVLENE 153
           +C RA V   E
Sbjct: 189 ICLRAHVKSQE 196

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_024971944.18.8e-1538.14uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus][more]
XP_024995361.17.4e-1437.98formin-like protein 3 [Cynara cardunculus var. scolymus][more]
TYH88163.12.8e-1340.32hypothetical protein ES332_D01G168900v1 [Gossypium tomentosum][more]
PON78020.18.2e-1339.68hypothetical protein PanWU01x14_023740 [Parasponia andersonii][more]
TYI22425.18.2e-1338.17hypothetical protein ES332_A06G102500v1 [Gossypium tomentosum][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032243.1Lag0032243.1mRNA