Lag0032151 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0032151
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr11: 26201945 .. 26202382 (-)
RNA-Seq Expression	Lag0032151
Synteny	Lag0032151

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGAGTATATTTCCAAGATTAAGAAGTGTATTGATGCTTTAGTTGCCATAGGGAAAACTGTACCGGTTGAAGATCATATTATGTATATCCTAGCTGGTCTTGGTGCAGAATATGAAACTATGGTTTCAGTGATTACTGCCAAAACAGGGTCACAAACTGTTCAGGATGTTATTGCATTGCTTTTAACACATGAAAGTAGGATAGAAATCAAATCTTCTATTAATGTTGATGCAGTCTTACCTACTGCTAATCTCACAATTCAAAATCCTACACAAAAAGATACAGAAAAATTGAGAAATGTGAGTCAGTCGCAACAACAACAAAGTTTCGGTAATGGTAGAGGAAGAGGAAGATTTAATTCTAGTCAAGGTAGAGGAGGAAGGTCTTGGAATAGTAGAAACATATCTCAGTGTAATGCCCGTAATTTGAGATAA

mRNA sequence

ATGAATGAGTATATTTCCAAGATTAAGAAGTGTATTGATGCTTTAGTTGCCATAGGGAAAACTGTACCGGTTGAAGATCATATTATGTATATCCTAGCTGGTCTTGGTGCAGAATATGAAACTATGGTTTCAGTGATTACTGCCAAAACAGGGTCACAAACTGTTCAGGATGTTATTGCATTGCTTTTAACACATGAAAGTAGGATAGAAATCAAATCTTCTATTAATGTTGATGCAGTCTTACCTACTGCTAATCTCACAATTCAAAATCCTACACAAAAAGATACAGAAAAATTGAGAAATGTGAGTCAGTCGCAACAACAACAAAGTTTCGGTAATGGTAGAGGAAGAGGAAGATTTAATTCTAGTCAAGGTAGAGGAGGAAGGTCTTGGAATAGTAGAAACATATCTCAGTGTAATGCCCGTAATTTGAGATAA

Coding sequence (CDS)

ATGAATGAGTATATTTCCAAGATTAAGAAGTGTATTGATGCTTTAGTTGCCATAGGGAAAACTGTACCGGTTGAAGATCATATTATGTATATCCTAGCTGGTCTTGGTGCAGAATATGAAACTATGGTTTCAGTGATTACTGCCAAAACAGGGTCACAAACTGTTCAGGATGTTATTGCATTGCTTTTAACACATGAAAGTAGGATAGAAATCAAATCTTCTATTAATGTTGATGCAGTCTTACCTACTGCTAATCTCACAATTCAAAATCCTACACAAAAAGATACAGAAAAATTGAGAAATGTGAGTCAGTCGCAACAACAACAAAGTTTCGGTAATGGTAGAGGAAGAGGAAGATTTAATTCTAGTCAAGGTAGAGGAGGAAGGTCTTGGAATAGTAGAAACATATCTCAGTGTAATGCCCGTAATTTGAGATAA

Protein sequence

MNEYISKIKKCIDALVAIGKTVPVEDHIMYILAGLGAEYETMVSVITAKTGSQTVQDVIALLLTHESRIEIKSSINVDAVLPTANLTIQNPTQKDTEKLRNVSQSQQQQSFGNGRGRGRFNSSQGRGGRSWNSRNISQCNARNLR

Homology

[Close]

BLAST of Lag0032151 vs. NCBI nr
Match: XP_022158089.1 (uncharacterized protein LOC111024658 [Momordica charantia])

HSP 1 Score: 111.3 bits (277), Expect = 7.0e-21
Identity = 69/146 (47.26%), Postives = 93/146 (63.70%), Query Frame = 0


Query: 1   MNEYISKIKKCIDALVAIGKTVPVEDHIMYILAGLGAEYETMVSVITAKTGSQTVQDVIA 60
           + EYI +IK  +D+L A GK++  EDHIM+IL+GLG+EYE+ VSVIT K G  T+QDV A
Sbjct: 51  LKEYIRQIKNLVDSLKAAGKSMNTEDHIMHILSGLGSEYESTVSVITVKKGPLTIQDVTA 110

Query: 61  LLLTHESRIEIKSSINVDAVLPTANLTIQNPTQKDTEKLRNVSQS-------QQQQSFGN 120
           LLL+H+ RIE + S   D  LP+A++ + +       +  +VS +       QQ  S  N
Sbjct: 111 LLLSHQRRIEKEISAAKDVTLPSASINLAHQQFGQNNQNNSVSYNSNDNHRYQQHYSNDN 170

Query: 121 GRGRGRFNSSQGRGGRSWNSRNISQC 140
            RGRGRF+ +   GGR WNSRN  QC
Sbjct: 171 NRGRGRFHRN---GGRRWNSRNKIQC 193

[Close]

BLAST of Lag0032151 vs. NCBI nr
Match: XP_022136882.1 (dr1-associated corepressor homolog isoform X1 [Momordica charantia])

HSP 1 Score: 95.5 bits (236), Expect = 4.0e-16
Identity = 60/139 (43.17%), Postives = 84/139 (60.43%), Query Frame = 0


Query: 1   MNEYISKIKKCIDALVAIGKTVPVEDHIMYILAGLGAEYETMVSVITAKTGSQTVQDVIA 60
           + +Y  K+K  +D+L A GK V VEDHIM+IL GL +E+E+ VSVI+A+T +QT+Q+V +
Sbjct: 65  LKDYFQKVKALVDSLAAAGKKVTVEDHIMHILTGLRSEFESTVSVISARTQTQTLQEVYS 124

Query: 61  LLLTHESRIEIKSSINVDAVLPTANLTIQNPTQKDTEKLRNVSQSQQQQSFGNGRGRGRF 120
           LLL+HE R E ++SIN D  LP+ NLT Q       + +       Q+    N R +   
Sbjct: 125 LLLSHEGRNE-RNSINTDGTLPSVNLTQQTKNSNSAQSI-----DGQRPYMQNNRSK--- 184

Query: 121 NSSQGRGGRSWNSRNISQC 140
           NS      R+WNS N  QC
Sbjct: 185 NSGNPNFRRNWNSNNRPQC 194

[Close]

BLAST of Lag0032151 vs. NCBI nr
Match: XP_022136883.1 (dr1-associated corepressor homolog isoform X2 [Momordica charantia])

HSP 1 Score: 95.5 bits (236), Expect = 4.0e-16
Identity = 60/139 (43.17%), Postives = 84/139 (60.43%), Query Frame = 0


Query: 1   MNEYISKIKKCIDALVAIGKTVPVEDHIMYILAGLGAEYETMVSVITAKTGSQTVQDVIA 60
           + +Y  K+K  +D+L A GK V VEDHIM+IL GL +E+E+ VSVI+A+T +QT+Q+V +
Sbjct: 65  LKDYFQKVKALVDSLAAAGKKVTVEDHIMHILTGLRSEFESTVSVISARTQTQTLQEVYS 124

Query: 61  LLLTHESRIEIKSSINVDAVLPTANLTIQNPTQKDTEKLRNVSQSQQQQSFGNGRGRGRF 120
           LLL+HE R E ++SIN D  LP+ NLT Q       + +       Q+    N R +   
Sbjct: 125 LLLSHEGRNE-RNSINTDGTLPSVNLTQQTKNSNSAQSI-----DGQRPYMQNNRSK--- 184

Query: 121 NSSQGRGGRSWNSRNISQC 140
           NS      R+WNS N  QC
Sbjct: 185 NSGNPNFRRNWNSNNRPQC 194

[Close]

BLAST of Lag0032151 vs. NCBI nr
Match: KAA0045111.1 (putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa] >TYK23627.1 putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 4.0e-16
Identity = 48/87 (55.17%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 1   MNEYISKIKKCIDALVAIGKTVPVEDHIMYILAGLGAEYETMVSVITAKTGSQTVQDVIA 60
           + EY  KI++C+DAL +I K +  +DHI+YILAGLG EY++M+SVI+A+T S +VQDV++
Sbjct: 291 LKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSMISVISARTDSPSVQDVMS 350

Query: 61  LLLTHESRIEIKSSINVDAVLPTANLT 88
           LLLT ES+IE  S I  +  LPT N+T
Sbjct: 351 LLLTQESQIE--SKITSEVSLPTVNMT 375

[Close]

BLAST of Lag0032151 vs. NCBI nr
Match: XP_022154487.1 (uncharacterized protein LOC111021757 [Momordica charantia])

HSP 1 Score: 92.0 bits (227), Expect = 4.4e-15
Identity = 62/142 (43.66%), Postives = 85/142 (59.86%), Query Frame = 0


Query: 1   MNEYISKIKKCIDALVAIGKTVPVEDHIMYILAGLGAEYETMVSVITAKTGSQTVQDVIA 60
           + +Y  KIK  +D+L   GK +  EDHIM+ILAGLG E++ ++SVITA+   QT+Q+V +
Sbjct: 155 LKDYFLKIKNLVDSLAIAGKKLSTEDHIMHILAGLGPEFDAIISVITARNMPQTLQEVCS 214

Query: 61  LLLTHESRIEIKSSINVDAVLPTANLTIQNPTQKDTEKLRNVSQSQ---QQQSFGNGRGR 120
           LLL  E R E ++ IN D  LP+ NLT+      D+ K  N+ QS+     QS  + RGR
Sbjct: 215 LLLQQEGRNE-RNLINSDGSLPSVNLTL-----NDSSKKNNLHQSKCFNPHQSNYSQRGR 274

Query: 121 GRFNSSQGRGGRSWNSRNISQC 140
           G  N S  R  R+W   N  QC
Sbjct: 275 GTNNRSSNR--RNWTGNNKPQC 288

The following BLAST results are available for this feature:

BLAST of Lag0032151 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158089.1	7.0e-21	47.26	uncharacterized protein LOC111024658 [Momordica charantia]	[more]
XP_022136882.1	4.0e-16	43.17	dr1-associated corepressor homolog isoform X1 [Momordica charantia]	[more]
XP_022136883.1	4.0e-16	43.17	dr1-associated corepressor homolog isoform X2 [Momordica charantia]	[more]
KAA0045111.1	4.0e-16	55.17	putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa] >TYK236...	[more]
XP_022154487.1	4.4e-15	43.66	uncharacterized protein LOC111021757 [Momordica charantia]	[more]

BLAST of Lag0032151 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 1..68 e-value: 2.7E-10 score: 40.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..145
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 1..126
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0032151.1	Lag0032151.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:0071704	organic substance metabolic process
molecular_function	GO:0016740	transferase activity