Lag0032140 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032140
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr11: 25881068 .. 25881601 (+)
RNA-Seq ExpressionLag0032140
SyntenyLag0032140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGAAGTAAAACCTCCTAGGGAAGACTCCTGGAAAGAAACTAATGGGCCTTCCACGTTTAACTTCAGCTCTAAAATTCAAGAAGGAATCAGGGCCATGTATGAATGGAAAAAAGGCAGACTAAAAGGTTCCATAAAAGAAGTAATCAAGAGAAAAGAGAAAGAAATCAAGGACCAAACTAACCCAAACAGTAAAAAAGAGTTTGACAGGTTGCCCAAAAGTGAGCAAGAGCTAGAGGACTTGTTGGCAGAAGAAGAAAGCTTTTGGAAAATAAGATCTAGGGAGGTTTGGTTAAAGAGTGGAGACAAAAACACGAAATGGTTCCATGCAAAGGCATCACACCCAATGAAAAGGAATGAGATTGAAGGAATCTTCAACAAGGAGAACAAATGGGTGGAGTCAGAGGAAGAGATAGGAAGGACAACAAATGACTTCTTTAAATCTCTCTTAAACTCCAACCAACCGGACATGAGCAGCATAAGGGATGTGATAGAAGCAATAGACTCCAATATAACAAACATCGAAATTTAG

mRNA sequence

ATGAGGGAAGTAAAACCTCCTAGGGAAGACTCCTGGAAAGAAACTAATGGGCCTTCCACGTTTAACTTCAGCTCTAAAATTCAAGAAGGAATCAGGGCCATGTATGAATGGAAAAAAGGCAGACTAAAAGGTTCCATAAAAGAAGTAATCAAGAGAAAAGAGAAAGAAATCAAGGACCAAACTAACCCAAACAGTAAAAAAGAGTTTGACAGGTTGCCCAAAAGTGAGCAAGAGCTAGAGGACTTGTTGGCAGAAGAAGAAAGCTTTTGGAAAATAAGATCTAGGGAGGTTTGGTTAAAGAGTGGAGACAAAAACACGAAATGGTTCCATGCAAAGGCATCACACCCAATGAAAAGGAATGAGATTGAAGGAATCTTCAACAAGGAGAACAAATGGGTGGAGTCAGAGGAAGAGATAGGAAGGACAACAAATGACTTCTTTAAATCTCTCTTAAACTCCAACCAACCGGACATGAGCAGCATAAGGGATGTGATAGAAGCAATAGACTCCAATATAACAAACATCGAAATTTAG

Coding sequence (CDS)

ATGAGGGAAGTAAAACCTCCTAGGGAAGACTCCTGGAAAGAAACTAATGGGCCTTCCACGTTTAACTTCAGCTCTAAAATTCAAGAAGGAATCAGGGCCATGTATGAATGGAAAAAAGGCAGACTAAAAGGTTCCATAAAAGAAGTAATCAAGAGAAAAGAGAAAGAAATCAAGGACCAAACTAACCCAAACAGTAAAAAAGAGTTTGACAGGTTGCCCAAAAGTGAGCAAGAGCTAGAGGACTTGTTGGCAGAAGAAGAAAGCTTTTGGAAAATAAGATCTAGGGAGGTTTGGTTAAAGAGTGGAGACAAAAACACGAAATGGTTCCATGCAAAGGCATCACACCCAATGAAAAGGAATGAGATTGAAGGAATCTTCAACAAGGAGAACAAATGGGTGGAGTCAGAGGAAGAGATAGGAAGGACAACAAATGACTTCTTTAAATCTCTCTTAAACTCCAACCAACCGGACATGAGCAGCATAAGGGATGTGATAGAAGCAATAGACTCCAATATAACAAACATCGAAATTTAG

Protein sequence

MREVKPPREDSWKETNGPSTFNFSSKIQEGIRAMYEWKKGRLKGSIKEVIKRKEKEIKDQTNPNSKKEFDRLPKSEQELEDLLAEEESFWKIRSREVWLKSGDKNTKWFHAKASHPMKRNEIEGIFNKENKWVESEEEIGRTTNDFFKSLLNSNQPDMSSIRDVIEAIDSNITNIEI
Homology
BLAST of Lag0032140 vs. NCBI nr
Match: XP_023906330.1 (uncharacterized protein LOC112018052 [Quercus suber])

HSP 1 Score: 106.3 bits (264), Expect = 2.8e-19
Identity = 56/168 (33.33%), Postives = 102/168 (60.71%), Query Frame = 0

Query: 9   EDSWKET--NGPSTFNFSSKIQEGIRAMYEWKKGRLKGSIKEVIKRKEKEIKDQTNPNSK 68
           E++W++T   G   F    KI+    A+ +W+K    G+ K  +K K +E+++  + N  
Sbjct: 367 EEAWRQTVEVGSPMFCLFQKIKNTRLALLKWEKVAF-GNTKASLKDKHRELEELNSKNDP 426

Query: 69  KEFDRLPKSEQELEDLLAEEESFWKIRSREVWLKSGDKNTKWFHAKASHPMKRNEIEGIF 128
              +R+ +++ E+ ++L +EE  W+ RSR +WL +GDKNTK+FH +A+   +RN+I G+F
Sbjct: 427 ALLERIRETKVEINNILHQEEVAWRQRSRAIWLPAGDKNTKFFHQRATQRKRRNQIVGVF 486

Query: 129 NKENKWVESEEEIGRTTNDFFKSLLNSNQPDMSSIRDVIEAIDSNITN 175
           N   +W   E++I     ++F+SL  S+QP+   +  V+EA+D  +T+
Sbjct: 487 NTVGEWCTDEDQIADIAVEYFQSLFTSSQPEDDDVSRVLEAVDRRVTD 533

BLAST of Lag0032140 vs. NCBI nr
Match: KMT18348.1 (hypothetical protein BVRB_2g025050 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-15
Identity = 54/163 (33.13%), Postives = 93/163 (57.06%), Query Frame = 0

Query: 11  SWKETNGPSTFNFSSKIQEGIRAMYEWKKGRLKGSIKEVIKRKEKEIKDQTNPNSKKEFD 70
           +W+E  G +      K++   R +  W KGR     K+++K ++   ++Q  P S    D
Sbjct: 108 AWEEAKGDA---IHVKMEHVARELLVWSKGRYGNLPKQIVKVEKALHEEQGLPTSTVTCD 167

Query: 71  RLPKSEQELEDLLAEEESFWKIRSREVWLKSGDKNTKWFHAKASHPMKRNEIEGIFNKEN 130
           +  K EQ+L+DL  ++E++W +RSR   +K GD+NTK+FH KAS   +RN I+GI N+E 
Sbjct: 168 KCAKLEQQLDDLHVKQEAYWYLRSRVSEVKDGDRNTKYFHHKASQRKQRNFIKGILNEEG 227

Query: 131 KWVESEEEIGRTTNDFFKSLLNSNQPDMSSIRDVIEAIDSNIT 174
           +W    E+I     ++F+++  S  P  +   DV++ +  +IT
Sbjct: 228 QWRTEVEDIEAEVGNYFRNIFTSINPTTTHFDDVLKYVRPSIT 267

BLAST of Lag0032140 vs. NCBI nr
Match: XP_015382878.1 (uncharacterized protein LOC107175701 [Citrus sinensis])

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-15
Identity = 53/164 (32.32%), Postives = 90/164 (54.88%), Query Frame = 0

Query: 12  WKETNGPSTFNFSSKIQEGIRAMYEWKKGRLKGSIKEV--IKRKEKEIKDQTNPNSKKEF 71
           W + N    F   SK  E +  +  W K    G  K++  +K K KE+K+Q +    +E 
Sbjct: 60  WTKNNPVELFRRKSK--ESLADLKIWSKQEFNGRDKKLKQLKNKLKEMKNQFSHFDNRE- 119

Query: 72  DRLPKSEQELEDLLAEEESFWKIRSREVWLKSGDKNTKWFHAKASHPMKRNEIEGIFNKE 131
             + + E +++++L +EE FWK RSR  WLK GD+N K+FHAKAS   K+N I G+ ++ 
Sbjct: 120 -EMQRIENQIDNILIDEEIFWKQRSRADWLKEGDRNAKFFHAKASAQKKKNRINGLEDEN 179

Query: 132 NKWVESEEEIGRTTNDFFKSLLNSNQPDMSSIRDVIEAIDSNIT 174
            KW+E + ++ +   D+F  +  +  P  S +   +E + + +T
Sbjct: 180 GKWIEEDNKVEQLICDYFTHIFTTTNPSQSQLHAALETVPAKLT 219

BLAST of Lag0032140 vs. NCBI nr
Match: XP_024043217.1 (uncharacterized protein LOC112099919 [Citrus clementina])

HSP 1 Score: 93.2 bits (230), Expect = 2.4e-15
Identity = 54/157 (34.39%), Postives = 90/157 (57.32%), Query Frame = 0

Query: 10  DSWKETNGPSTFNFSSKIQEGIRA-MYEWKKGRLKGSIKEVIKRKEKEIKDQTNPNSKKE 69
           D W   N    F    K   G +A +  W K +    + +V + K K ++ + N    + 
Sbjct: 8   DGWVRNNHVQCF---KKAGNGSKAQLQRWSKQQFGNMMAKVNQLKRKLVEIKFNHVQYEA 67

Query: 70  FDRLPKSEQELEDLLAEEESFWKIRSREVWLKSGDKNTKWFHAKASHPMKRNEIEGIFNK 129
            + +  +E+++E+LL +EE++W+ RSR  WLK GD+NTK+F++KA  PMK+N I G+ N+
Sbjct: 68  KNEIRNTEKQIENLLMDEETYWRQRSRVEWLKEGDRNTKFFYSKALAPMKKNMIWGVLNQ 127

Query: 130 ENKWVESEEEIGRTTNDFFKSLLNSNQPDMSSIRDVI 166
           +N WVE EEE+ R   ++F +L  ++ P    I D +
Sbjct: 128 QNVWVEDEEEVERQFCNYFTNLFTTSSPIKECILDAL 161

BLAST of Lag0032140 vs. NCBI nr
Match: XP_030970917.1 (uncharacterized protein LOC115991351 isoform X1 [Quercus lobata])

HSP 1 Score: 92.0 bits (227), Expect = 5.4e-15
Identity = 55/167 (32.93%), Postives = 93/167 (55.69%), Query Frame = 0

Query: 9   EDSWK--ETNGPSTFNFSSKIQEGIRAMYEWKKGRLKGSIKEVIKRKEKEIKDQTNPNSK 68
           +++W+  E NG        KI+    A  +W +     S K +++ K+K+++D    NS 
Sbjct: 226 QEAWRVAERNGSPMSKLFEKIKRCRFASVDWSRAAGVSS-KTLLQEKQKQLEDLCALNSV 285

Query: 69  KEFDRLPKSEQELEDLLAEEESFWKIRSREVWLKSGDKNTKWFHAKASHPMKRNEIEGIF 128
              D +   + E   LL +EE FW+ RSR +WL +GDKNTK+FH +AS    +N+I G++
Sbjct: 286 DHLDAIKGLKVETNSLLHQEELFWRQRSRSIWLLAGDKNTKFFHQRASQRRWKNQILGVY 345

Query: 129 NKENKWVESEEEIGRTTNDFFKSLLNSNQPDMSSIRDVIEAIDSNIT 174
           + E +W  SE+ I  T   +F+ L  S+ P  ++I  V+ ++D  +T
Sbjct: 346 DSEGRWGTSEDSIAHTAEHYFQQLFTSSHP--TTIDGVLNSVDRLVT 389

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023906330.12.8e-1933.33uncharacterized protein LOC112018052 [Quercus suber][more]
KMT18348.11.1e-1533.13hypothetical protein BVRB_2g025050 [Beta vulgaris subsp. vulgaris][more]
XP_015382878.11.4e-1532.32uncharacterized protein LOC107175701 [Citrus sinensis][more]
XP_024043217.12.4e-1534.39uncharacterized protein LOC112099919 [Citrus clementina][more]
XP_030970917.15.4e-1532.93uncharacterized protein LOC115991351 isoform X1 [Quercus lobata][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..73

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032140.1Lag0032140.1mRNA