Lag0032109 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032109
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr11: 24950090 .. 24950557 (+)
RNA-Seq ExpressionLag0032109
SyntenyLag0032109
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAAAAGAGATTTCTTCAACGAGAAGGATTCACTAATAGAGCGAGAACATGCCAGAGTTCGTAACCAGAGTTATCTTACAGTACAAGTGGCAGGAGTTCTGGGTCACCCTCAGGAAGTTGTAGTGCCTTTAGTTCGAGAGTTTTACGTCGGACTAAGGGACGAAAACATGAGTATGACAGTGGCGAGAGGCAAGATTGTTAGCTTCTCTTCTGTTGACATCAACAGGGTGTACAAAATCAAGGCACCCTTGCATCCAAGAGGGAACGATGCCATTAAGAACCCCTCGGCCAAACAAATGAAAGAAGCACTGAAATTGGTGGCCAACAAGGGAGTTAAGTGGGAAGAGTCCCAAACAAAGGTGAAGGCATTAGTGTCAAGCGATCTCAAGCCAGAATCGGCAGTGTTGCTTCACTTTCTCAAGAACAGATTGATGCCAACAACCACGACAGCACAATCTCAGTAG

mRNA sequence

ATGAGAAAAAGAGATTTCTTCAACGAGAAGGATTCACTAATAGAGCGAGAACATGCCAGAGTTCGTAACCAGAGTTATCTTACAGTACAAGTGGCAGGAGTTCTGGGTCACCCTCAGGAAGTTGTAGTGCCTTTAGTTCGAGAGTTTTACGTCGGACTAAGGGACGAAAACATGAGTATGACAGTGGCGAGAGGCAAGATTGTTAGCTTCTCTTCTGTTGACATCAACAGGGTGTACAAAATCAAGGCACCCTTGCATCCAAGAGGGAACGATGCCATTAAGAACCCCTCGGCCAAACAAATGAAAGAAGCACTGAAATTGGTGGCCAACAAGGGAGTTAAGTGGGAAGAGTCCCAAACAAAGGTGAAGGCATTAGTGTCAAGCGATCTCAAGCCAGAATCGGCAGTGTTGCTTCACTTTCTCAAGAACAGATTGATGCCAACAACCACGACAGCACAATCTCAGTAG

Coding sequence (CDS)

ATGAGAAAAAGAGATTTCTTCAACGAGAAGGATTCACTAATAGAGCGAGAACATGCCAGAGTTCGTAACCAGAGTTATCTTACAGTACAAGTGGCAGGAGTTCTGGGTCACCCTCAGGAAGTTGTAGTGCCTTTAGTTCGAGAGTTTTACGTCGGACTAAGGGACGAAAACATGAGTATGACAGTGGCGAGAGGCAAGATTGTTAGCTTCTCTTCTGTTGACATCAACAGGGTGTACAAAATCAAGGCACCCTTGCATCCAAGAGGGAACGATGCCATTAAGAACCCCTCGGCCAAACAAATGAAAGAAGCACTGAAATTGGTGGCCAACAAGGGAGTTAAGTGGGAAGAGTCCCAAACAAAGGTGAAGGCATTAGTGTCAAGCGATCTCAAGCCAGAATCGGCAGTGTTGCTTCACTTTCTCAAGAACAGATTGATGCCAACAACCACGACAGCACAATCTCAGTAG

Protein sequence

MRKRDFFNEKDSLIEREHARVRNQSYLTVQVAGVLGHPQEVVVPLVREFYVGLRDENMSMTVARGKIVSFSSVDINRVYKIKAPLHPRGNDAIKNPSAKQMKEALKLVANKGVKWEESQTKVKALVSSDLKPESAVLLHFLKNRLMPTTTTAQSQ
Homology
BLAST of Lag0032109 vs. NCBI nr
Match: XP_038904385.1 (uncharacterized protein LOC120090747 [Benincasa hispida])

HSP 1 Score: 72.0 bits (175), Expect = 5.0e-09
Identity = 38/110 (34.55%), Postives = 64/110 (58.18%), Query Frame = 0

Query: 41  VVVP-LVREFYVGLRDENMSMTVARGKIVSFSSVDINRVYKIKAPLHPRGNDAIKNPSAK 100
           +++P +VR FY G         + +G IV FS+ DIN +YK+K      GN  I +P  +
Sbjct: 210 IIIPTVVRAFYKGRLHGTKDAVIMKGCIVPFSARDINELYKMKDIPDASGNKIIDDPQEE 269

Query: 101 QMKEALKLVANKGVKWEESQTKVKALVSSDLKPESAVLLHFLKNRLMPTT 150
           +M++AL+ +   G +W  S   +K L SS L PE+ + ++ +K R++PT+
Sbjct: 270 KMEDALRTLTQSGTQWSVSLKGIKTLASSKLLPEARLWVYLVKRRIIPTS 319

BLAST of Lag0032109 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 72.0 bits (175), Expect = 5.0e-09
Identity = 42/113 (37.17%), Postives = 62/113 (54.87%), Query Frame = 0

Query: 37  HPQEVVVPLVREFYVGLRDENMSMTVARGKIVSFSSVDINRVYKIKAPLHPRGNDAIKNP 96
           HP++ +VPLVREFY  L D   +    RG  VS+S   IN V+ +  P+    ++ I+N 
Sbjct: 78  HPEDPIVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVFGLGDPVDEH-SEFIQNI 137

Query: 97  SAKQMKEALKLVANKGVKWEESQTKVKALVSSDLKPESAVLLHFLKNRLMPTT 150
           + + +   L+ VA  G +W  S       + S L P + V  HFLK+RL+PTT
Sbjct: 138 TQQDLITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTT 189

BLAST of Lag0032109 vs. NCBI nr
Match: XP_038888747.1 (vicilin-like seed storage protein At2g18540 [Benincasa hispida])

HSP 1 Score: 71.2 bits (173), Expect = 8.6e-09
Identity = 36/110 (32.73%), Postives = 63/110 (57.27%), Query Frame = 0

Query: 40  EVVVPLVREFYVGLRDENMSMTVARGKIVSFSSVDINRVYKIKAPLHPRGNDAIKNPSAK 99
           ++++ +VR FY G   +     + +G  V FS+ DIN +YK+K  L   GN  I +P   
Sbjct: 196 DMMMEMVRAFYHGRLHDTKDAVIMKGWTVPFSARDINELYKMKDILDAPGNKIIDDPEEA 255

Query: 100 QMKEALKLVANKGVKWEESQTKVKALVSSDLKPESAVLLHFLKNRLMPTT 150
            M++ L+++   G +W  S   +K L S+ L PE+ + ++ +K RL+PT+
Sbjct: 256 HMEDTLRVLIQSGTQWSVSLKVIKTLASNKLLPEARLWVYLVKQRLIPTS 305

BLAST of Lag0032109 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 68.2 bits (165), Expect = 7.3e-08
Identity = 41/113 (36.28%), Postives = 60/113 (53.10%), Query Frame = 0

Query: 37  HPQEVVVPLVREFYVGLRDENMSMTVARGKIVSFSSVDINRVYKIKAPLHPRGNDAIKNP 96
           HP++ +VPLVREFY  L D   +    RG  VS+S   IN V+ +  P+    ++ I+N 
Sbjct: 69  HPEDPIVPLVREFYANLTDPVENTVYVRGVQVSWSEEAINAVFGLGDPVDEH-SEFIENI 128

Query: 97  SAKQMKEALKLVANKGVKWEESQTKVKALVSSDLKPESAVLLHFLKNRLMPTT 150
           +   +   L+ VA  G +W  S       + S L P + V  HFLK+ L+PTT
Sbjct: 129 TEHDLITVLETVAVAGAEWNVSAQGAYTCIRSALTPAAKVWFHFLKSHLLPTT 180

BLAST of Lag0032109 vs. NCBI nr
Match: XP_038876674.1 (chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida])

HSP 1 Score: 65.1 bits (157), Expect = 6.2e-07
Identity = 36/105 (34.29%), Postives = 59/105 (56.19%), Query Frame = 0

Query: 45  LVREFYVGLRDENMSMTVARGKIVSFSSVDINRVYKIKAPLHPRGNDAIKNPSAKQMKEA 104
           +VR+FY G           + + VSFS+ DIN +Y++K   +  GN  I +P+ +QM++A
Sbjct: 276 VVRDFYRGRLHGTRDAVTLKRETVSFSARDINEIYQMKDNPYASGNKIIDDPTEQQMEDA 335

Query: 105 LKLVANKGVKWEESQTKVKALVSSDLKPESAVLLHFLKNRLMPTT 150
           L+++   G+KW  S   V  L S  L  E  + ++ +K RL+ TT
Sbjct: 336 LQVLMQLGMKWSVSLKGVSTLASKSLLLEGRLWVYLVKKRLISTT 380

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038904385.15.0e-0934.55uncharacterized protein LOC120090747 [Benincasa hispida][more]
PON46472.15.0e-0937.17hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
XP_038888747.18.6e-0932.73vicilin-like seed storage protein At2g18540 [Benincasa hispida][more]
PON35554.17.3e-0836.28hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii][more]
XP_038876674.16.2e-0734.29chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032109.1Lag0032109.1mRNA