Lag0032027 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032027
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotransposon protein
Locationchr11: 22804055 .. 22804372 (-)
RNA-Seq ExpressionLag0032027
SyntenyLag0032027
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGAGGAGTTGAGTCAAAAAGGGAAAGAAATAGAAGAGGTCACCGAAAATGTGGAAAAATCAGGGTGGGTAGGTTGCAAAGGAGCGCTGATTCAAACGAGGGGAGACCGCAGCAAGTTCAAGCAGTTGGAAATGTCTGTCTTCACGGGTGTCAATCCAAATTCATGGTTCTTCAGAACTAAAAGGTATTTCAAGATTCATCAGCTTACCGAATGGGAGAAGATCACTGCGACTATCATCAGCTCCGATGAGTATGTGGTAGATTGGTATCATTGGTCTCACAATCGCAAGAAAATTAAATCTGGGATGATCTAA

mRNA sequence

ATGACAGAGGAGTTGAGTCAAAAAGGGAAAGAAATAGAAGAGGTCACCGAAAATGTGGAAAAATCAGGGTGGGTAGGTTGCAAAGGAGCGCTGATTCAAACGAGGGGAGACCGCAGCAAGTTCAAGCAGTTGGAAATGTCTGTCTTCACGGGTGTCAATCCAAATTCATGGTTCTTCAGAACTAAAAGGTATTTCAAGATTCATCAGCTTACCGAATGGGAGAAGATCACTGCGACTATCATCAGCTCCGATGAGTATGTGGTAGATTGGTATCATTGGTCTCACAATCGCAAGAAAATTAAATCTGGGATGATCTAA

Coding sequence (CDS)

ATGACAGAGGAGTTGAGTCAAAAAGGGAAAGAAATAGAAGAGGTCACCGAAAATGTGGAAAAATCAGGGTGGGTAGGTTGCAAAGGAGCGCTGATTCAAACGAGGGGAGACCGCAGCAAGTTCAAGCAGTTGGAAATGTCTGTCTTCACGGGTGTCAATCCAAATTCATGGTTCTTCAGAACTAAAAGGTATTTCAAGATTCATCAGCTTACCGAATGGGAGAAGATCACTGCGACTATCATCAGCTCCGATGAGTATGTGGTAGATTGGTATCATTGGTCTCACAATCGCAAGAAAATTAAATCTGGGATGATCTAA

Protein sequence

MTEELSQKGKEIEEVTENVEKSGWVGCKGALIQTRGDRSKFKQLEMSVFTGVNPNSWFFRTKRYFKIHQLTEWEKITATIISSDEYVVDWYHWSHNRKKIKSGMI
Homology
BLAST of Lag0032027 vs. NCBI nr
Match: XP_031745528.1 (uncharacterized protein LOC116405915 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 7.9e-14
Identity = 35/69 (50.72%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 34  TRGDRSKFKQLEMSVFTGVNPNSWFFRTKRYFKIHQLTEWEKITATIISSDEYVVDWYHW 93
           T GDRSK+K+LEM +F G NP SW +R + +F+I+ L E EK+   ++S  +  VDWY W
Sbjct: 76  TMGDRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLPETEKVKVAVVSFGQDEVDWYRW 135

Query: 94  SHNRKKIKS 103
           SHNR+K++S
Sbjct: 136 SHNRRKVES 144

BLAST of Lag0032027 vs. NCBI nr
Match: KAA0037230.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 1.7e-13
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = 0

Query: 34  TRGDRSKFKQLEMSVFTGVNPNSWFFRTKRYFKIHQLTEWEKITATIISSDEYVVDWYHW 93
           T  DRSK+K+LEM +F G NP SW +R + +F+I+ L E EK+   ++S  +  VDWY W
Sbjct: 19  TMVDRSKYKKLEMPMFLGENPESWVYRAENFFEINNLPEAEKVKVAVVSFGQDEVDWYRW 78

Query: 94  SHNRKKIKS 103
           SHNRKK+KS
Sbjct: 79  SHNRKKVKS 87

BLAST of Lag0032027 vs. NCBI nr
Match: KAA0065941.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK30285.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 2.3e-13
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 0

Query: 37  DRSKFKQLEMSVFTGVNPNSWFFRTKRYFKIHQLTEWEKITATIISSDEYVVDWYHWSHN 96
           DRSK+K+LEM +F G NP SW +R + +FKI+ L E EK+   ++S  +  VDWY WSHN
Sbjct: 79  DRSKYKKLEMPMFLGENPESWVYRAEHFFKINNLPEAEKVKVVVVSFGQDEVDWYRWSHN 138

Query: 97  RKKIKS 103
           RKK++S
Sbjct: 139 RKKVES 144

BLAST of Lag0032027 vs. NCBI nr
Match: KAA0061073.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 3.9e-13
Identity = 34/66 (51.52%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 37  DRSKFKQLEMSVFTGVNPNSWFFRTKRYFKIHQLTEWEKITATIISSDEYVVDWYHWSHN 96
           DRSK+K+LEM +F G NP SW +R + +F+I+ L+E EK+   ++S  +  VDWY WSHN
Sbjct: 80  DRSKYKKLEMPMFLGENPESWVYRAEHFFEINNLSESEKVKVAVVSFGQDEVDWYRWSHN 139

Query: 97  RKKIKS 103
           RKK++S
Sbjct: 140 RKKVES 145

BLAST of Lag0032027 vs. NCBI nr
Match: TYK15104.1 (syndetin [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 3.9e-13
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 0

Query: 37   DRSKFKQLEMSVFTGVNPNSWFFRTKRYFKIHQLTEWEKITATIISSDEYVVDWYHWSHN 96
            DRSK+K+LEM +F G NP SW  R + +FKI+ L E EK+   ++S  +  VDWY WSHN
Sbjct: 976  DRSKYKKLEMPMFLGENPESWVHRAQHFFKINNLPETEKVKVAVVSFGQDEVDWYRWSHN 1035

Query: 97   RKKIKS 103
            RKKI+S
Sbjct: 1036 RKKIES 1041

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_031745528.17.9e-1450.72uncharacterized protein LOC116405915 [Cucumis sativus][more]
KAA0037230.11.7e-1352.17retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0065941.12.3e-1353.03retrotransposon protein [Cucumis melo var. makuwa] >TYK30285.1 retrotransposon p... [more]
KAA0061073.13.9e-1351.52Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK15104.13.9e-1354.55syndetin [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032027.1Lag0032027.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process