Lag0032023 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032023
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGirdin-like
Locationchr11: 22698402 .. 22698827 (-)
RNA-Seq ExpressionLag0032023
SyntenyLag0032023
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCAGGTAACTCAAGCTAGTGGCAAACTCGAAGAAGTAGAGAGAGTTTCAAAAAACCGAGCCAAGCGAGAAAGAGATTATGATATATTGGACGAGAAGAATAGAAGGTTGATTAAGGAGAATCATGCTTTGAAGAATGAGAATACTGCATTACGAAGGGCAACTCATTCACAAGAGGACATAATCAAAGACCTTTCAAGAAGCAAAGAGACTCTCTTAGATTTAGTTGCGGAATTAAACGAAACCACCAACAAGCAGAAAACGCAACTTATCGAGTTTGAAGAAGCCAATACTGCTCTAAGGCGAACGATGGACAATCTACGCGTGAATATGCAGGCTCAATCAGAAGAGTCTGAAGCTTTAAAAGGTTATGCAAGCTCGTTAGAACGTCAGCTCCAAGCATTTCAAAGGGCAAGCGAATAG

mRNA sequence

ATGGACCAGGTAACTCAAGCTAGTGGCAAACTCGAAGAAGTAGAGAGAGTTTCAAAAAACCGAGCCAAGCGAGAAAGAGATTATGATATATTGGACGAGAAGAATAGAAGGTTGATTAAGGAGAATCATGCTTTGAAGAATGAGAATACTGCATTACGAAGGGCAACTCATTCACAAGAGGACATAATCAAAGACCTTTCAAGAAGCAAAGAGACTCTCTTAGATTTAGTTGCGGAATTAAACGAAACCACCAACAAGCAGAAAACGCAACTTATCGAGTTTGAAGAAGCCAATACTGCTCTAAGGCGAACGATGGACAATCTACGCGTGAATATGCAGGCTCAATCAGAAGAGTCTGAAGCTTTAAAAGGTTATGCAAGCTCGTTAGAACGTCAGCTCCAAGCATTTCAAAGGGCAAGCGAATAG

Coding sequence (CDS)

ATGGACCAGGTAACTCAAGCTAGTGGCAAACTCGAAGAAGTAGAGAGAGTTTCAAAAAACCGAGCCAAGCGAGAAAGAGATTATGATATATTGGACGAGAAGAATAGAAGGTTGATTAAGGAGAATCATGCTTTGAAGAATGAGAATACTGCATTACGAAGGGCAACTCATTCACAAGAGGACATAATCAAAGACCTTTCAAGAAGCAAAGAGACTCTCTTAGATTTAGTTGCGGAATTAAACGAAACCACCAACAAGCAGAAAACGCAACTTATCGAGTTTGAAGAAGCCAATACTGCTCTAAGGCGAACGATGGACAATCTACGCGTGAATATGCAGGCTCAATCAGAAGAGTCTGAAGCTTTAAAAGGTTATGCAAGCTCGTTAGAACGTCAGCTCCAAGCATTTCAAAGGGCAAGCGAATAG

Protein sequence

MDQVTQASGKLEEVERVSKNRAKRERDYDILDEKNRRLIKENHALKNENTALRRATHSQEDIIKDLSRSKETLLDLVAELNETTNKQKTQLIEFEEANTALRRTMDNLRVNMQAQSEESEALKGYASSLERQLQAFQRASE
Homology
BLAST of Lag0032023 vs. NCBI nr
Match: XP_031738551.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 2.1e-17
Identity = 59/141 (41.84%), Postives = 89/141 (63.12%), Query Frame = 0

Query: 1   MDQVTQASGKLEEVERVSKNRAKRERDYDILDEKNRRLIKENHALKNENTALRRATHSQE 60
           +D  T    +LE+ +   KN+ K E++ ++LDE+ RR+ K N +LKNE T L+    SQ+
Sbjct: 153 IDHATFLQRELEKTKSFLKNQDKLEKNLEVLDEEMRRMNKSNRSLKNEKTILQATVESQD 212

Query: 61  DIIKDLSRSKETLLDLVAELNETTNKQKTQLIEFEEANTALRRTMDNLRVNMQAQSEESE 120
           + IKDL   KE  L+LV +L  +  K++ Q+++ E  N +LR+T+D+L V M   SE+ +
Sbjct: 213 EYIKDLENMKEYYLELVNDLKSSIGKREAQIVDLEVHNCSLRQTVDSLHVKMVEHSEDYK 272

Query: 121 ALKGYASSLERQLQAFQRASE 142
            LK YA SL  QL AFQ +SE
Sbjct: 273 ILKNYADSLHHQLTAFQNSSE 293

BLAST of Lag0032023 vs. NCBI nr
Match: KAA0036949.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 3.5e-17
Identity = 60/141 (42.55%), Postives = 87/141 (61.70%), Query Frame = 0

Query: 1   MDQVTQASGKLEEVERVSKNRAKRERDYDILDEKNRRLIKENHALKNENTALRRATHSQE 60
           MD  T    KLE+ +   KN+ K E+D + LD++ RR+ K N +LKNE T  +    SQ+
Sbjct: 387 MDHATYLQNKLEKTKSFLKNQDKLEKDLETLDKEMRRMNKANRSLKNEKTTFQATMGSQD 446

Query: 61  DIIKDLSRSKETLLDLVAELNETTNKQKTQLIEFEEANTALRRTMDNLRVNMQAQSEESE 120
           + IKDL   KE  L LV +LN +  K++T++++ E  N +LR+T+D+L + M   SEE E
Sbjct: 447 EYIKDLENGKEYFLKLVNDLNTSIRKRETKIMDLEAQNHSLRQTVDSLHLKMVEHSEEYE 506

Query: 121 ALKGYASSLERQLQAFQRASE 142
            LK YA SL  QL A Q +S+
Sbjct: 507 ILKNYADSLHYQLTALQNSSK 527

BLAST of Lag0032023 vs. NCBI nr
Match: KAA0060422.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 4.6e-17
Identity = 60/140 (42.86%), Postives = 87/140 (62.14%), Query Frame = 0

Query: 1   MDQVTQASGKLEEVERVSKNRAKRERDYDILDEKNRRLIKENHALKNENTALRRATHSQE 60
           MD  T    +LE+ +   KN+ K E+D + LD++ RR+ K N +LKNE T L+    SQ+
Sbjct: 1   MDHATYLQNELEKTKSFLKNQDKLEKDLETLDKEMRRMDKANRSLKNEKTTLQATVGSQD 60

Query: 61  DIIKDLSRSKETLLDLVAELNETTNKQKTQLIEFEEANTALRRTMDNLRVNMQAQSEESE 120
           + IKDL   KE  L+ V +LN +  K++TQ+++ E  N +LR+T+D+L + M   SEE E
Sbjct: 61  EYIKDLENGKEYFLERVNDLNTSIGKRETQIMDLEAQNHSLRQTVDSLHLKMAECSEEYE 120

Query: 121 ALKGYASSLERQLQAFQRAS 141
            LK YA SL  QL A Q +S
Sbjct: 121 ILKNYADSLHYQLTALQNSS 140

BLAST of Lag0032023 vs. NCBI nr
Match: KAA0037780.1 (girdin-like [Cucumis melo var. makuwa] >TYK27303.1 girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 3.9e-16
Identity = 59/132 (44.70%), Postives = 85/132 (64.39%), Query Frame = 0

Query: 10  KLEEVERVSKNRAKRERDYDILDEKNRRLIKENHALKNENTALRRATHSQEDIIKDLSRS 69
           +LE+ +   KN+ K E D   LD++ RR+ K N +LKNE T L+    SQ++ IKDL   
Sbjct: 111 ELEKTKSFLKNQDKLENDLKTLDKEMRRMNKANRSLKNEKTTLQATVGSQDEYIKDLENG 170

Query: 70  KETLLDLVAELNETTNKQKTQLIEFEEANTALRRTMDNLRVNMQAQSEESEALKGYASSL 129
           KE  L+LV +LN +  K++TQ+++ E  N +LR+T+DNL + M  +SEE E LK YA SL
Sbjct: 171 KEYFLELVNDLNTSIVKRETQIMDLEAQNHSLRQTIDNLHLKMAERSEEYEILKNYADSL 230

Query: 130 ERQLQAFQRASE 142
             QL A Q +S+
Sbjct: 231 HFQLTAHQNSSK 242

BLAST of Lag0032023 vs. NCBI nr
Match: KAA0062685.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 6.6e-16
Identity = 58/140 (41.43%), Postives = 85/140 (60.71%), Query Frame = 0

Query: 1   MDQVTQASGKLEEVERVSKNRAKRERDYDILDEKNRRLIKENHALKNENTALRRATHSQE 60
           MD  T    +L++ +   KN+ K E+D + LD++ RR+ K N +LKNE T L+    SQ 
Sbjct: 118 MDHATYLQNELKKTKSFLKNQDKLEKDLETLDKEMRRMNKANRSLKNEKTTLQATVGSQN 177

Query: 61  DIIKDLSRSKETLLDLVAELNETTNKQKTQLIEFEEANTALRRTMDNLRVNMQAQSEESE 120
           + IKDL   KE  L+ V +LN +  K++TQ+++ E  N +LR+T+D+L + M   SEE E
Sbjct: 178 EYIKDLENGKEYFLERVNDLNTSIGKRETQIMDLEAQNHSLRQTVDSLHLKMAECSEEYE 237

Query: 121 ALKGYASSLERQLQAFQRAS 141
            LK Y  SL  QL A Q +S
Sbjct: 238 ILKNYVESLHYQLTALQNSS 257

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_031738551.12.1e-1741.84LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus][more]
KAA0036949.13.5e-1742.55girdin-like [Cucumis melo var. makuwa][more]
KAA0060422.14.6e-1742.86girdin-like [Cucumis melo var. makuwa][more]
KAA0037780.13.9e-1644.70girdin-like [Cucumis melo var. makuwa] >TYK27303.1 girdin-like [Cucumis melo var... [more]
KAA0062685.16.6e-1641.43girdin-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 91..118
NoneNo IPR availableCOILSCoilCoilcoord: 126..141
NoneNo IPR availableCOILSCoilCoilcoord: 28..55
NoneNo IPR availableCOILSCoilCoilcoord: 63..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032023.1Lag0032023.1mRNA