Lag0031994 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0031994
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr11: 21993031 .. 21994293 (-)
RNA-Seq ExpressionLag0031994
SyntenyLag0031994
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCCTCCCGGGGACGACCAGACCCAGAAGGAAGCTGGGCCGAGCCGCAAAAAGGCCCGCAGGAGTTCTCCGCTAAAAAAAATGCCAGGTATGTACACAGGAAATAATGGCAGGGAAAAGTTGGAGGCTTGGGCAAACTCCAAGGCCGAGTAGGGCCGAAAGGGACGAGAGATGTCTGGATGGCTAAAAGGGGAGGGTAGTTACCAAACCTCCCAAAAGAAGGCAGAGAACGAGGATATAGAAGGATTGATTGGCAGGAGGGGCCAGTCTTCACCGATGAGATAATGAGAGAGGAGGTGCCGCACAAATTCAGAGTACCAAACTTCCCTCAATATGATGGGAAGAAGGATCCGAAATAGCACCTAGATGCATACCAGACTTGGATGGACTTTCATGGGGCGAACGAAGCAACAAGGTGTCGAGCTTTTGCACTAACGCTCACAGGTTTAGCAAGGTAGTGGTTTGGCAAGGTCCCACGAAGGTCAATAGGCTCGTTCAAAGAACTGGCCCGAGCGTTTGTTACGCAATTCCTAAATCAACTTGCTGACAGTAAAGCAGGGGCCCCGGGAGAGCCTGAGGGATTATATTAACATATTTAGCAAAGAATTTTGCAGGTGGAGGGTTACGATGATGGAGTTGCTTTGACTGTTGTGATTTCAGGTTTGCAGGATGAAAGGCTACTCAATTCAATTGGAGAGAGCCAACCTCGAACATACGTGGAGTTCATGACCCGAGCACAAAGATACATAAGCGCATAGGAGTTGTTGAGATCCAAGCAGGAAGAAAGAGAGAGCCGGAGGATGTCAATATCAGTCCGGCGTCGGGAAAACAGGGGAAAGAGGCACCATGCCGAAGGAAGAGGCTGGAGCCAACCTGAGCACCCCTCGGCCAATGGCTGAGGCCGACCAGAAGCCAAGGAATTGCAAGGTCGTGCGGAGCTAAGGCCAGGTTCGACAGGTATACACCACTAACAACTTCGCTTGAACAGGTCTTGGCCGCGATACAGGACACAATCTGTTGAAACGCCCAGAAAAGTTGAGATCAGATCCCGACAGGAGAAACAGGAACAAATATTGCATGTTACACGGAGATCACGACCATACAACCAGAGAATGCATCCAGTTACGAGATGAGATAGAAACCCTAATCCGAGAGGGTTACCTCAAGGAATTCGTGGGAGTGACAGAAGCAAGAGGCCACTGCCAGCAGACCAAGGCAAGGGTGGTGCCAACCCACCGCTCGAGATTCGAACCATTTTAG

mRNA sequence

ATGCCTCCTCCCGGGGACGACCAGACCCAGAAGGAAGCTGGGCCGAGCCGCAAAAAGGCCCGCAGGAGTTCTCCGCTAAAAAAAATGCCAGAAGGATCCGAAATAGCACCTAGATGCATACCAGACTTGGATGGACTTTCATGGGGCGAACGAAGCAACAAGGTGTCGAGCTTTTGCACTAACGCTCACAGGTTTAGCAAGGTAGTGGTTTGGCAAGGTCCCACGAAGGTGGAGGGTTACGATGATGGAGTTGCTTTGACTGTTGTGATTTCAGGTCTTGGCCGCGATACAGGACACAATCTGTTGAAACGCCCAGAAAAGTTGAGATCAGATCCCGACAGGAGAAACAGGAACAAATATTGCATGTTACACGGAGATCACGACCATACAACCAGAGAATGCATCCAGTTACGAGATGAGATAGAAACCCTAATCCGAGAGGGTTACCTCAAGGAATTCGTGGGAGTGACAGAAGCAAGAGGCCACTGCCAGCAGACCAAGGCAAGGGTGGTGCCAACCCACCGCTCGAGATTCGAACCATTTTAG

Coding sequence (CDS)

ATGCCTCCTCCCGGGGACGACCAGACCCAGAAGGAAGCTGGGCCGAGCCGCAAAAAGGCCCGCAGGAGTTCTCCGCTAAAAAAAATGCCAGAAGGATCCGAAATAGCACCTAGATGCATACCAGACTTGGATGGACTTTCATGGGGCGAACGAAGCAACAAGGTGTCGAGCTTTTGCACTAACGCTCACAGGTTTAGCAAGGTAGTGGTTTGGCAAGGTCCCACGAAGGTGGAGGGTTACGATGATGGAGTTGCTTTGACTGTTGTGATTTCAGGTCTTGGCCGCGATACAGGACACAATCTGTTGAAACGCCCAGAAAAGTTGAGATCAGATCCCGACAGGAGAAACAGGAACAAATATTGCATGTTACACGGAGATCACGACCATACAACCAGAGAATGCATCCAGTTACGAGATGAGATAGAAACCCTAATCCGAGAGGGTTACCTCAAGGAATTCGTGGGAGTGACAGAAGCAAGAGGCCACTGCCAGCAGACCAAGGCAAGGGTGGTGCCAACCCACCGCTCGAGATTCGAACCATTTTAG

Protein sequence

MPPPGDDQTQKEAGPSRKKARRSSPLKKMPEGSEIAPRCIPDLDGLSWGERSNKVSSFCTNAHRFSKVVVWQGPTKVEGYDDGVALTVVISGLGRDTGHNLLKRPEKLRSDPDRRNRNKYCMLHGDHDHTTRECIQLRDEIETLIREGYLKEFVGVTEARGHCQQTKARVVPTHRSRFEPF
Homology
[Close]
BLAST of Lag0031994 vs. NCBI nr
Match: TXG71857.1 (hypothetical protein EZV62_000436 [Acer yangbiense])

HSP 1 Score: 88.2 bits (217), Expect = 7.9e-14
Identity = 44/78 (56.41%), Postives = 50/78 (64.10%), Query Frame = 0 

Query: 101 LLKRPEKLRSDPDRRNRNKYCMLHGDHDHTTRECIQLRDEIETLIREGYLKEFVGVT-EA 160
           LL +PE LR DP RRN+ KYC  HGD  HTT EC  L+D IETLIR GYLKEF+ +T EA
Sbjct: 524 LLTKPEPLRGDPSRRNQAKYCDFHGDIGHTTSECFHLKDHIETLIRNGYLKEFIDLTQEA 583

Query: 161 RGHCQQTKARVVPTHRSR 178
           R     T  R  P H  +
Sbjct: 584 RQQVPDTTERDPPKHSDK 601

[Close]
BLAST of Lag0031994 vs. NCBI nr
Match: TXG66066.1 (hypothetical protein EZV62_007341 [Acer yangbiense])

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-13
Identity = 43/78 (55.13%), Postives = 50/78 (64.10%), Query Frame = 0 

Query: 101 LLKRPEKLRSDPDRRNRNKYCMLHGDHDHTTRECIQLRDEIETLIREGYLKEFVGVT-EA 160
           LL +PE LR +P RRN+ KYC  HGD  HTT EC  L+D IETLIR GYLKEF+ +T EA
Sbjct: 44  LLTKPEPLRGEPSRRNQAKYCDFHGDIGHTTSECFHLKDHIETLIRNGYLKEFIDITQEA 103

Query: 161 RGHCQQTKARVVPTHRSR 178
           R     T  R  P H  +
Sbjct: 104 RQQVPDTTERDPPKHSDK 121

[Close]
BLAST of Lag0031994 vs. NCBI nr
Match: XP_024024791.1 (uncharacterized protein LOC112092009 [Morus notabilis])

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-12
Identity = 45/93 (48.39%), Postives = 55/93 (59.14%), Query Frame = 0 

Query: 80  YDDGVALTVVISGLGRDTGH-NLLKRPEKLRSDPDRRNRNKYCMLHGDHDHTTRECIQLR 139
           YD    LTV +  +    G  NLL+RPE +RSDP RRN+ KYC  HGD  H T +C  L+
Sbjct: 2   YDSYHQLTVGVEEVFNQVGRGNLLRRPEPMRSDPSRRNQKKYCRFHGDVGHHTNDCANLK 61

Query: 140 DEIETLIREGYLKEFVGVTEAR--GHCQQTKAR 170
           DEIE +IREG L+EF      R  GH  Q  +R
Sbjct: 62  DEIERVIREGRLQEFKAERRPRNDGHGDQNGSR 94

[Close]
BLAST of Lag0031994 vs. NCBI nr
Match: XP_022149419.1 (uncharacterized protein LOC111017849 [Momordica charantia])

HSP 1 Score: 83.2 bits (204), Expect = 2.6e-12
Identity = 37/87 (42.53%), Postives = 57/87 (65.52%), Query Frame = 0 

Query: 73  GPTKVEGYDDGVALTV----VISGLGRDTGHNLLKRPEKLRSDPDRRNRNKYCMLHGDHD 132
           GPT+   Y+    +T+    +++ +       LLKRPEKLR  P+RR+++KYC  H +HD
Sbjct: 183 GPTRSRPYERFTPITIPISEILTNIEESGMEKLLKRPEKLRGAPERRSKDKYCRFHREHD 242

Query: 133 HTTRECIQLRDEIETLIREGYLKEFVG 156
           H T +C +L+ +IE LI++GY K+FVG
Sbjct: 243 HNTSDCWELKRQIEDLIQDGYFKKFVG 269

[Close]
BLAST of Lag0031994 vs. NCBI nr
Match: TXG63304.1 (hypothetical protein EZV62_010298 [Acer yangbiense])

HSP 1 Score: 83.2 bits (204), Expect = 2.6e-12
Identity = 42/78 (53.85%), Postives = 48/78 (61.54%), Query Frame = 0 

Query: 101 LLKRPEKLRSDPDRRNRNKYCMLHGDHDHTTRECIQLRDEIETLIREGYLKEFVGVT-EA 160
           LL +PE LR DP  RN+ KYC  H D  HTT EC  L+D IETLIR GYLKEF+ +T EA
Sbjct: 44  LLTKPEPLRGDPSLRNQAKYCDFHDDIGHTTSECFHLKDHIETLIRNGYLKEFIDITQEA 103

Query: 161 RGHCQQTKARVVPTHRSR 178
           R     T  R  P H  +
Sbjct: 104 RQQVPDTTDRDPPKHSDK 121

The following BLAST results are available for this feature:
BLAST of Lag0031994 vs. NCBI nr
Match NameE-valueIdentityDescription
TXG71857.17.9e-1456.41hypothetical protein EZV62_000436 [Acer yangbiense][more]
TXG66066.11.4e-1355.13hypothetical protein EZV62_007341 [Acer yangbiense][more]
XP_024024791.12.0e-1248.39uncharacterized protein LOC112092009 [Morus notabilis][more]
XP_022149419.12.6e-1242.53uncharacterized protein LOC111017849 [Momordica charantia][more]
TXG63304.12.6e-1253.85hypothetical protein EZV62_010298 [Acer yangbiense][more]
BLAST of Lag0031994 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 127..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0031994.1Lag0031994.1mRNA