Lag0031892 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0031892
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationchr11: 17905419 .. 17906186 (-)
RNA-Seq ExpressionLag0031892
SyntenyLag0031892
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGCCTAGGGGAAAAATTCAAGCAGACAGAGGTAACCGAGCAAAAGGGGCTTATCAAAGGCTGTTCTGTGTGCTCAACCTTCATCTCTCATCTTCTCTTTGTCGATGATATCCTGCTTTTTGTTCAAGACGATGATGAGGTGTTAGCCAATTGTTTCAAAATCATTAAAGCTTTCAAACAAGCCTCGGGCCTTAATATCAATTTCAGGAAGTCTTCTATTTCGGGAGTCAATGTTTCCGAAGATAGAATTGCCTGTATTGCGTCGAGTTGGGGTTGTGCCCCTTGTCAACTCCCTATCTCCTACTTGGGCTCTCCTCTAGGCGGCAACCTGGCTCACACTTCCTTTTGGTCTTCGGTTGTTGAGAAAATTCAACGCAAGCTTGAAAACTGGCACTTCTCTTACATCTCAAAGGGGGGCCGGCTAACCCTCATTCAAGCTACTCTTAGCAATATTCCTTTATATATGTTATCGGTCTTCAAAGCTCCTCAGTCTATATGTAATCATGTGGACAAGGTTATTAGAGGCTTCCTTTGGAATGGTTCTAGCTCTGATCAAAACCTCCCTTTTCTCGGTTTGGATGTGGTGGCTGCTCCAAAGGTTTCAGAAGGGTTGGGTTTTTTTAAAACTCGAATTTCAAATCAAGTGCTTCAAATTAAATGGATTTGGAGGTTCTATCAAGAAGATCAACCTTTATGGAAGTGCCTTATTGTGGCCAAGTACAAAACTTCTCCTATGGGTGCCCTCCCATGTGCCCCATTTTGA

mRNA sequence

ATGGCAAGCCTAGGGGAAAAATTCAAGCAGACAGAGGTAACCGAGCAAAAGGGGCTTATCAAAGGCTGTTCTGTGTGCTCAACCTTCATCTCTCATCTTCTCTTTGTCGATGATATCCTGCTTTTTGTTCAAGACGATGATGAGGTGTTAGCCAATTGTTTCAAAATCATTAAAGCTTTCAAACAAGCCTCGGGCCTTAATATCAATTTCAGGAAGTCTTCTATTTCGGGAGTCAATGTTTCCGAAGATAGAATTGCCTGTATTGCGTCGAGTTGGGGTTGTGCCCCTTGTCAACTCCCTATCTCCTACTTGGGCTCTCCTCTAGGCGGCAACCTGGCTCACACTTCCTTTTGGTCTTCGGTTGTTGAGAAAATTCAACGCAAGCTTGAAAACTGGCACTTCTCTTACATCTCAAAGGGGGGCCGGCTAACCCTCATTCAAGCTACTCTTAGCAATATTCCTTTATATATGTTATCGGTCTTCAAAGCTCCTCAGTCTATATGTAATCATGTGGACAAGGTTATTAGAGGCTTCCTTTGGAATGGTTCTAGCTCTGATCAAAACCTCCCTTTTCTCGGTTTGGATGTGGTGGCTGCTCCAAAGGTTTCAGAAGGGTTGGGTTTTTTTAAAACTCGAATTTCAAATCAAGTGCTTCAAATTAAATGGATTTGGAGGTTCTATCAAGAAGATCAACCTTTATGGAAGTGCCTTATTGTGGCCAAGTACAAAACTTCTCCTATGGGTGCCCTCCCATGTGCCCCATTTTGA

Coding sequence (CDS)

ATGGCAAGCCTAGGGGAAAAATTCAAGCAGACAGAGGTAACCGAGCAAAAGGGGCTTATCAAAGGCTGTTCTGTGTGCTCAACCTTCATCTCTCATCTTCTCTTTGTCGATGATATCCTGCTTTTTGTTCAAGACGATGATGAGGTGTTAGCCAATTGTTTCAAAATCATTAAAGCTTTCAAACAAGCCTCGGGCCTTAATATCAATTTCAGGAAGTCTTCTATTTCGGGAGTCAATGTTTCCGAAGATAGAATTGCCTGTATTGCGTCGAGTTGGGGTTGTGCCCCTTGTCAACTCCCTATCTCCTACTTGGGCTCTCCTCTAGGCGGCAACCTGGCTCACACTTCCTTTTGGTCTTCGGTTGTTGAGAAAATTCAACGCAAGCTTGAAAACTGGCACTTCTCTTACATCTCAAAGGGGGGCCGGCTAACCCTCATTCAAGCTACTCTTAGCAATATTCCTTTATATATGTTATCGGTCTTCAAAGCTCCTCAGTCTATATGTAATCATGTGGACAAGGTTATTAGAGGCTTCCTTTGGAATGGTTCTAGCTCTGATCAAAACCTCCCTTTTCTCGGTTTGGATGTGGTGGCTGCTCCAAAGGTTTCAGAAGGGTTGGGTTTTTTTAAAACTCGAATTTCAAATCAAGTGCTTCAAATTAAATGGATTTGGAGGTTCTATCAAGAAGATCAACCTTTATGGAAGTGCCTTATTGTGGCCAAGTACAAAACTTCTCCTATGGGTGCCCTCCCATGTGCCCCATTTTGA

Protein sequence

MASLGEKFKQTEVTEQKGLIKGCSVCSTFISHLLFVDDILLFVQDDDEVLANCFKIIKAFKQASGLNINFRKSSISGVNVSEDRIACIASSWGCAPCQLPISYLGSPLGGNLAHTSFWSSVVEKIQRKLENWHFSYISKGGRLTLIQATLSNIPLYMLSVFKAPQSICNHVDKVIRGFLWNGSSSDQNLPFLGLDVVAAPKVSEGLGFFKTRISNQVLQIKWIWRFYQEDQPLWKCLIVAKYKTSPMGALPCAPF
Homology
BLAST of Lag0031892 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 230.3 bits (586), Expect = 1.8e-56
Identity = 103/222 (46.40%), Postives = 147/222 (66.22%), Query Frame = 0

Query: 30  ISHLLFVDDILLFVQDDDEVLANCFKIIKAFKQASGLNINFRKSSISGVNVSEDRIACIA 89
           ++H+LF DDIL+FV+D D+ ++N   I+  F+ ASGLNIN  KS+I  +NV  DR   IA
Sbjct: 608 LTHILFADDILIFVEDRDDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIA 667

Query: 90  SSWGCAPCQLPISYLGSPLGGNLAHTSFWSSVVEKIQRKLENWHFSYISKGGRLTLIQAT 149
            SWG +   LP SYLG PLGG  + ++FW +V++KIQ+KL NW +S +SKGGR+TLI +T
Sbjct: 668 DSWGISKGHLPTSYLGMPLGGRPSSSNFWDNVLQKIQKKLSNWKYSQLSKGGRITLINST 727

Query: 150 LSNIPLYMLSVFKAPQSICNHVDKVIRGFLWNGSSSDQNLPFLGLDVVAAPKVSEGLGFF 209
           L ++P+Y +SVFK P+ I   ++   R FLWNG+S+  N+  +  + + +PK   GLG  
Sbjct: 728 LESLPIYQMSVFKVPKGIAQKIEASWRNFLWNGASNGHNISLIRWNQIVSPKEKGGLGIH 787

Query: 210 KTRISNQVLQIKWIWRFYQEDQPLWKCLIVAKYKTSPMGALP 252
               +N  L  KW+W+F  E  PLWK LI++KY    MG+ P
Sbjct: 788 SVNSTNFALLCKWLWKFLTEKDPLWKRLIISKYDKEKMGSFP 829

BLAST of Lag0031892 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 229.2 bits (583), Expect = 4.1e-56
Identity = 105/237 (44.30%), Postives = 153/237 (64.56%), Query Frame = 0

Query: 16  QKGLIKGCSVCSTF-ISHLLFVDDILLFVQDDDEVLANCFKIIKAFKQASGLNINFRKSS 75
           +KG I G +      ++H+LF DDIL+FV+D ++ ++N   I+  F+ ASGLNIN  KS+
Sbjct: 485 EKGKINGVNFGPNLNLTHILFADDILIFVEDKEDYVSNLKMILHLFESASGLNINLSKST 544

Query: 76  ISGVNVSEDRIACIASSWGCAPCQLPISYLGSPLGGNLAHTSFWSSVVEKIQRKLENWHF 135
           I  +NV  DR   I  SWG +  QLP +YLG PLGG  + ++FW ++++KIQ+KL +W +
Sbjct: 545 IFPINVPTDRANSIVDSWGISKGQLPTTYLGMPLGGKPSSSNFWDNILQKIQKKLSSWKY 604

Query: 136 SYISKGGRLTLIQATLSNIPLYMLSVFKAPQSICNHVDKVIRGFLWNGSSSDQNLPFLGL 195
           S +SKGGR+TLI +TL ++P+Y LSVFK P+ I   ++   R FLWNG+S+  N+  +  
Sbjct: 605 SQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWNGTSNGHNISLIRW 664

Query: 196 DVVAAPKVSEGLGFFKTRISNQVLQIKWIWRFYQEDQPLWKCLIVAKYKTSPMGALP 252
           + V +PK   GLG      +N  L  KW+W+F  E +PLWK LI++KY    MG  P
Sbjct: 665 NQVVSPKEKGGLGIHSVHSTNFALLCKWLWKFLTEKEPLWKRLIISKYDQEKMGRFP 721

BLAST of Lag0031892 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 228.0 bits (580), Expect = 9.0e-56
Identity = 105/237 (44.30%), Postives = 153/237 (64.56%), Query Frame = 0

Query: 16  QKGLIKGCSVCSTF-ISHLLFVDDILLFVQDDDEVLANCFKIIKAFKQASGLNINFRKSS 75
           +KG I G +      ++H+LF DDIL+FV+D ++ ++N   I+  F+ ASGLNIN  KS+
Sbjct: 391 EKGKINGVNFGPNLNLTHILFADDILIFVEDKEDYVSNLKMILHLFESASGLNINLSKST 450

Query: 76  ISGVNVSEDRIACIASSWGCAPCQLPISYLGSPLGGNLAHTSFWSSVVEKIQRKLENWHF 135
           I  +NV  DR   I  SWG +  QLP +YLG PLGG  + ++FW ++++KIQ+KL +W +
Sbjct: 451 IFPINVPTDRANSIVDSWGISKGQLPTTYLGMPLGGKPSSSNFWDNILQKIQKKLSSWKY 510

Query: 136 SYISKGGRLTLIQATLSNIPLYMLSVFKAPQSICNHVDKVIRGFLWNGSSSDQNLPFLGL 195
           S +SKGGR+TLI +TL ++P+Y LSVFK P+ I   ++   R FLWNG+S+  N+  +  
Sbjct: 511 SQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWNGTSNGHNISLIRW 570

Query: 196 DVVAAPKVSEGLGFFKTRISNQVLQIKWIWRFYQEDQPLWKCLIVAKYKTSPMGALP 252
           + V +PK   GLG      +N  L  KW+W+F  E +PLWK LI++KY    MG  P
Sbjct: 571 NQVVSPKEKGGLGIHFVHSTNFALLCKWLWKFLTEKEPLWKRLIISKYDQEKMGRFP 627

BLAST of Lag0031892 vs. NCBI nr
Match: KAA0046762.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 224.6 bits (571), Expect = 1.0e-54
Identity = 113/238 (47.48%), Postives = 150/238 (63.03%), Query Frame = 0

Query: 15  EQKGLIKGCSVCSTF-ISHLLFVDDILLFVQDDDEVLANCFKIIKAFKQASGLNINFRKS 74
           E  G IKG S  S   ISH+LF DDILLF++D+D  L N    +  F++ASGL IN  KS
Sbjct: 506 EITGAIKGVSFSSNCNISHILFADDILLFIEDNDFFLNNLRMALSLFERASGLKINLLKS 565

Query: 75  SISGVNVSEDRIACIASSWGCAPCQLPISYLGSPLGGNLAHTSFWSSVVEKIQRKLENWH 134
           ++  +NVSE R    AS WG +   LP+SYLG PLGGN     FWS+V EKIQ+KL NW 
Sbjct: 566 ALVPMNVSEIRAKECASFWGISSQSLPLSYLGVPLGGNPKSRLFWSNVEEKIQKKLNNWK 625

Query: 135 FSYISKGGRLTLIQATLSNIPLYMLSVFKAPQSICNHVDKVIRGFLWNGSSSDQNLPFLG 194
           ++ ISKGGRLTLI++TLS++P Y LSVF+AP   C +++K  R FLW G++S +    + 
Sbjct: 626 YAQISKGGRLTLIKSTLSSLPTYQLSVFQAPSLTCKNIEKFWRNFLWKGNNSSEGFHLIN 685

Query: 195 LDVVAAPKVSEGLGFFKTRISNQVLQIKWIWRFYQEDQPLWKCLIVAKYKTSPMGALP 252
              V   K   GLG  +  ++N+ L  KW+WR+  E + LW+ LI  KYK    G +P
Sbjct: 686 WTKVTKSKAEGGLGISRVHVTNKALLTKWLWRYLSEPKALWRRLIQCKYKGIYPGDIP 743

BLAST of Lag0031892 vs. NCBI nr
Match: KAA0067274.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 223.0 bits (567), Expect = 2.9e-54
Identity = 113/239 (47.28%), Postives = 149/239 (62.34%), Query Frame = 0

Query: 15  EQKGLIKGCSV--CSTFISHLLFVDDILLFVQDDDEVLANCFKIIKAFKQASGLNINFRK 74
           E KG IKG S   C   ISHLLF DD+L+FV+D+++ L N    +  F++ASGL  N  K
Sbjct: 12  ETKGAIKGVSFNNCCN-ISHLLFADDVLIFVEDNEKYLNNLQMALSLFEKASGLTFNLLK 71

Query: 75  SSISGVNVSEDRIACIASSWGCAPCQLPISYLGSPLGGNLAHTSFWSSVVEKIQRKLENW 134
           S+IS +N+S DR   IA  +G     LP++YLG PLGGN    SFW   +E I +KL  W
Sbjct: 72  STISPINISADRTDQIARLFGFQTKFLPVNYLGVPLGGNPRSRSFWGQTIECIHKKLNGW 131

Query: 135 HFSYISKGGRLTLIQATLSNIPLYMLSVFKAPQSICNHVDKVIRGFLWNGSSSDQNLPFL 194
            +S ISKGGRLTL++A+LS++P Y LS FKAP S+   ++K  R FLW GS   QN   +
Sbjct: 132 KYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGGSEDKQNAHLI 191

Query: 195 GLDVVAAPKVSEGLGFFKTRISNQVLQIKWIWRFYQEDQPLWKCLIVAKYKTSPMGALP 252
              +  +PK  EGLG  K + +NQVL  KW+WR++ E   LWK  I AKY  +  G +P
Sbjct: 192 NWRICTSPKKLEGLGISKLKDTNQVLLCKWLWRYHNESNSLWKKCIDAKYTKNHQGDIP 249

BLAST of Lag0031892 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.6e-16
Identity = 40/125 (32.00%), Postives = 66/125 (52.80%), Query Frame = 0

Query: 118 WSSVVEKIQRKLENWHFSYISKGGRLTLIQATLSNIPLYMLSVFKAPQSICNHVDKVIRG 177
           +  ++E++  ++  W    +S  GRLTL +A LS++P++ +S    PQSI N +D++ R 
Sbjct: 13  FGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRT 72

Query: 178 FLWNGSSSDQNLPFLGLDVVAAPKVSEGLGFFKTRISNQVLQIKWIWRFYQEDQPLWKCL 237
           FLW  ++  +    +    V +PK   GLG    +  N+ L  K  WR  QE   LW  +
Sbjct: 73  FLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLV 132

Query: 238 IVAKY 243
           +  KY
Sbjct: 133 LQKKY 137

BLAST of Lag0031892 vs. ExPASy Swiss-Prot
Match: P08548 (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.7e-07
Identity = 46/220 (20.91%), Postives = 96/220 (43.64%), Query Frame = 0

Query: 13  VTEQKGLIKGCSVCSTFISHLLFVDDILLFVQDDDEVLANCFKIIKAFKQASGLNINFRK 72
           + E+K  IKG  + S  I   LF DD+++++++  +      ++IK +   SG  IN  K
Sbjct: 678 IREEKA-IKGIHIGSEEIKLSLFADDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTHK 737

Query: 73  SSISGVNVSEDRIACIASSWGCAPCQLPISYLGSPLGGNL--AHTSFWSSVVEKIQRKLE 132
           S       +      +  S         + YLG  L  ++   +   + ++ ++I   + 
Sbjct: 738 SVAFIYTNNNQAEKTVKDSIPFTVVPKKMKYLGVYLTKDVKDLYKENYETLRKEIAEDVN 797

Query: 133 NWHFSYISKGGRLTLIQATLSNIPLYMLSV--FKAPQSICNHVDKVIRGFLWNGSSSDQN 192
            W     S  GR+ +++ ++    +Y  +    KAP S    ++K+I  F+WN     Q 
Sbjct: 798 KWKNIPCSWLGRINIVKMSILPKAIYNFNAIPIKAPLSYFKDLEKIILHFIWN-----QK 857

Query: 193 LPFLGLDVVAAPKVSEGLGFFKTRISNQVLQIKWIWRFYQ 229
            P +   +++    + G+     R+  + + IK  W +++
Sbjct: 858 KPQIAKTLLSNKNKAGGITLPDLRLYYKSIVIKTAWYWHK 891

BLAST of Lag0031892 vs. ExPASy Swiss-Prot
Match: O00370 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.1e-06
Identity = 49/242 (20.25%), Postives = 93/242 (38.43%), Query Frame = 0

Query: 16  QKGLIKGCSVCSTFISHLLFVDDILLFVQDDDEVLANCFKIIKAFKQASGLNINFRKSSI 75
           Q+  IKG  +    +   LF DD+++++++      N  K+I  F + SG  IN +KS  
Sbjct: 681 QEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQA 740

Query: 76  SGVNVSEDRIACIASSWGCAPCQLPISYLGSPLGGNL--AHTSFWSSVVEKIQRKLENWH 135
              N +    + I            I YLG  L  ++       +  ++++I+     W 
Sbjct: 741 FLYNNNRQTESQIMGELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLKEIKEDTNKWK 800

Query: 136 FSYISKGGRLTLIQATLSNIPLYMLSV--FKAPQSICNHVDKVIRGFLWNGSSSDQNLPF 195
               S  GR+ +++  +    +Y  +    K P +    ++K    F+WN     Q    
Sbjct: 801 NIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWN-----QKRAR 860

Query: 196 LGLDVVAAPKVSEGLGF--FKTRISNQVLQIKWIWRFYQEDQPLWKCLIVAKYKTSPMGA 252
           +   +++    + G+    FK      V +  W W +   D   W        +T P   
Sbjct: 861 IAKSILSQKNKAGGITLPDFKLYYKATVTKTAWYW-YQNRDIDQWN-------RTEPSEI 909

BLAST of Lag0031892 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 8.8e-57
Identity = 103/222 (46.40%), Postives = 147/222 (66.22%), Query Frame = 0

Query: 30  ISHLLFVDDILLFVQDDDEVLANCFKIIKAFKQASGLNINFRKSSISGVNVSEDRIACIA 89
           ++H+LF DDIL+FV+D D+ ++N   I+  F+ ASGLNIN  KS+I  +NV  DR   IA
Sbjct: 608 LTHILFADDILIFVEDRDDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIA 667

Query: 90  SSWGCAPCQLPISYLGSPLGGNLAHTSFWSSVVEKIQRKLENWHFSYISKGGRLTLIQAT 149
            SWG +   LP SYLG PLGG  + ++FW +V++KIQ+KL NW +S +SKGGR+TLI +T
Sbjct: 668 DSWGISKGHLPTSYLGMPLGGRPSSSNFWDNVLQKIQKKLSNWKYSQLSKGGRITLINST 727

Query: 150 LSNIPLYMLSVFKAPQSICNHVDKVIRGFLWNGSSSDQNLPFLGLDVVAAPKVSEGLGFF 209
           L ++P+Y +SVFK P+ I   ++   R FLWNG+S+  N+  +  + + +PK   GLG  
Sbjct: 728 LESLPIYQMSVFKVPKGIAQKIEASWRNFLWNGASNGHNISLIRWNQIVSPKEKGGLGIH 787

Query: 210 KTRISNQVLQIKWIWRFYQEDQPLWKCLIVAKYKTSPMGALP 252
               +N  L  KW+W+F  E  PLWK LI++KY    MG+ P
Sbjct: 788 SVNSTNFALLCKWLWKFLTEKDPLWKRLIISKYDKEKMGSFP 829

BLAST of Lag0031892 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 2.0e-56
Identity = 105/237 (44.30%), Postives = 153/237 (64.56%), Query Frame = 0

Query: 16  QKGLIKGCSVCSTF-ISHLLFVDDILLFVQDDDEVLANCFKIIKAFKQASGLNINFRKSS 75
           +KG I G +      ++H+LF DDIL+FV+D ++ ++N   I+  F+ ASGLNIN  KS+
Sbjct: 485 EKGKINGVNFGPNLNLTHILFADDILIFVEDKEDYVSNLKMILHLFESASGLNINLSKST 544

Query: 76  ISGVNVSEDRIACIASSWGCAPCQLPISYLGSPLGGNLAHTSFWSSVVEKIQRKLENWHF 135
           I  +NV  DR   I  SWG +  QLP +YLG PLGG  + ++FW ++++KIQ+KL +W +
Sbjct: 545 IFPINVPTDRANSIVDSWGISKGQLPTTYLGMPLGGKPSSSNFWDNILQKIQKKLSSWKY 604

Query: 136 SYISKGGRLTLIQATLSNIPLYMLSVFKAPQSICNHVDKVIRGFLWNGSSSDQNLPFLGL 195
           S +SKGGR+TLI +TL ++P+Y LSVFK P+ I   ++   R FLWNG+S+  N+  +  
Sbjct: 605 SQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWNGTSNGHNISLIRW 664

Query: 196 DVVAAPKVSEGLGFFKTRISNQVLQIKWIWRFYQEDQPLWKCLIVAKYKTSPMGALP 252
           + V +PK   GLG      +N  L  KW+W+F  E +PLWK LI++KY    MG  P
Sbjct: 665 NQVVSPKEKGGLGIHSVHSTNFALLCKWLWKFLTEKEPLWKRLIISKYDQEKMGRFP 721

BLAST of Lag0031892 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 4.4e-56
Identity = 105/237 (44.30%), Postives = 153/237 (64.56%), Query Frame = 0

Query: 16  QKGLIKGCSVCSTF-ISHLLFVDDILLFVQDDDEVLANCFKIIKAFKQASGLNINFRKSS 75
           +KG I G +      ++H+LF DDIL+FV+D ++ ++N   I+  F+ ASGLNIN  KS+
Sbjct: 391 EKGKINGVNFGPNLNLTHILFADDILIFVEDKEDYVSNLKMILHLFESASGLNINLSKST 450

Query: 76  ISGVNVSEDRIACIASSWGCAPCQLPISYLGSPLGGNLAHTSFWSSVVEKIQRKLENWHF 135
           I  +NV  DR   I  SWG +  QLP +YLG PLGG  + ++FW ++++KIQ+KL +W +
Sbjct: 451 IFPINVPTDRANSIVDSWGISKGQLPTTYLGMPLGGKPSSSNFWDNILQKIQKKLSSWKY 510

Query: 136 SYISKGGRLTLIQATLSNIPLYMLSVFKAPQSICNHVDKVIRGFLWNGSSSDQNLPFLGL 195
           S +SKGGR+TLI +TL ++P+Y LSVFK P+ I   ++   R FLWNG+S+  N+  +  
Sbjct: 511 SQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWNGTSNGHNISLIRW 570

Query: 196 DVVAAPKVSEGLGFFKTRISNQVLQIKWIWRFYQEDQPLWKCLIVAKYKTSPMGALP 252
           + V +PK   GLG      +N  L  KW+W+F  E +PLWK LI++KY    MG  P
Sbjct: 571 NQVVSPKEKGGLGIHFVHSTNFALLCKWLWKFLTEKEPLWKRLIISKYDQEKMGRFP 627

BLAST of Lag0031892 vs. ExPASy TrEMBL
Match: A0A5A7TTK1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00450 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 4.8e-55
Identity = 113/238 (47.48%), Postives = 150/238 (63.03%), Query Frame = 0

Query: 15  EQKGLIKGCSVCSTF-ISHLLFVDDILLFVQDDDEVLANCFKIIKAFKQASGLNINFRKS 74
           E  G IKG S  S   ISH+LF DDILLF++D+D  L N    +  F++ASGL IN  KS
Sbjct: 506 EITGAIKGVSFSSNCNISHILFADDILLFIEDNDFFLNNLRMALSLFERASGLKINLLKS 565

Query: 75  SISGVNVSEDRIACIASSWGCAPCQLPISYLGSPLGGNLAHTSFWSSVVEKIQRKLENWH 134
           ++  +NVSE R    AS WG +   LP+SYLG PLGGN     FWS+V EKIQ+KL NW 
Sbjct: 566 ALVPMNVSEIRAKECASFWGISSQSLPLSYLGVPLGGNPKSRLFWSNVEEKIQKKLNNWK 625

Query: 135 FSYISKGGRLTLIQATLSNIPLYMLSVFKAPQSICNHVDKVIRGFLWNGSSSDQNLPFLG 194
           ++ ISKGGRLTLI++TLS++P Y LSVF+AP   C +++K  R FLW G++S +    + 
Sbjct: 626 YAQISKGGRLTLIKSTLSSLPTYQLSVFQAPSLTCKNIEKFWRNFLWKGNNSSEGFHLIN 685

Query: 195 LDVVAAPKVSEGLGFFKTRISNQVLQIKWIWRFYQEDQPLWKCLIVAKYKTSPMGALP 252
              V   K   GLG  +  ++N+ L  KW+WR+  E + LW+ LI  KYK    G +P
Sbjct: 686 WTKVTKSKAEGGLGISRVHVTNKALLTKWLWRYLSEPKALWRRLIQCKYKGIYPGDIP 743

BLAST of Lag0031892 vs. ExPASy TrEMBL
Match: A0A5A7VIU9 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00940 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 1.4e-54
Identity = 113/239 (47.28%), Postives = 149/239 (62.34%), Query Frame = 0

Query: 15  EQKGLIKGCSV--CSTFISHLLFVDDILLFVQDDDEVLANCFKIIKAFKQASGLNINFRK 74
           E KG IKG S   C   ISHLLF DD+L+FV+D+++ L N    +  F++ASGL  N  K
Sbjct: 12  ETKGAIKGVSFNNCCN-ISHLLFADDVLIFVEDNEKYLNNLQMALSLFEKASGLTFNLLK 71

Query: 75  SSISGVNVSEDRIACIASSWGCAPCQLPISYLGSPLGGNLAHTSFWSSVVEKIQRKLENW 134
           S+IS +N+S DR   IA  +G     LP++YLG PLGGN    SFW   +E I +KL  W
Sbjct: 72  STISPINISADRTDQIARLFGFQTKFLPVNYLGVPLGGNPRSRSFWGQTIECIHKKLNGW 131

Query: 135 HFSYISKGGRLTLIQATLSNIPLYMLSVFKAPQSICNHVDKVIRGFLWNGSSSDQNLPFL 194
            +S ISKGGRLTL++A+LS++P Y LS FKAP S+   ++K  R FLW GS   QN   +
Sbjct: 132 KYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGGSEDKQNAHLI 191

Query: 195 GLDVVAAPKVSEGLGFFKTRISNQVLQIKWIWRFYQEDQPLWKCLIVAKYKTSPMGALP 252
              +  +PK  EGLG  K + +NQVL  KW+WR++ E   LWK  I AKY  +  G +P
Sbjct: 192 NWRICTSPKKLEGLGISKLKDTNQVLLCKWLWRYHNESNSLWKKCIDAKYTKNHQGDIP 249

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0039950.11.8e-5646.40LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245... [more]
KAA0041397.14.1e-5644.30LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0044556.19.0e-5644.30LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0046762.11.0e-5447.48LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0067274.12.9e-5447.28LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P0C2F65.6e-1632.00Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
P085484.7e-0720.91LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1[more]
O003703.1e-0620.25LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A5A7T9I78.8e-5746.40LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TIB82.0e-5644.30LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TR154.4e-5644.30LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TTK14.8e-5547.48LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7VIU91.4e-5447.28LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 17..242
NoneNo IPR availablePANTHERPTHR33116:SF33OS01G0885550 PROTEINcoord: 17..242
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 1..108
score: 8.527134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0031892.1Lag0031892.1mRNA