Lag0031885 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0031885
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibonuclease H
Locationchr11: 17836006 .. 17836624 (+)
RNA-Seq ExpressionLag0031885
SyntenyLag0031885
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAGGGTACAGAAGCGAGAAAAAGATAGGCGTTTGGCCAGATTTGAAAGTCGTGAACCAGAATATGGGGAAAAATTCATCCCTCATCTCTACCATTCATTTGAAAGTGCTGGTATAATTCGTCCAGGAGATTTTGCAGTTGCAGTAGTGACTAAAGAGGAAGAATTTGGTCCATGGATCTACCCGTGCCCAGAAAACTTCGAGCTCAACAATTGGAGTACTATTGAATTACGTCATTTGCTGTTAAGATGTCAAAGTAATTGACCACTTTTTTATTGTTTTTTGCAATTTCAATTTTCATTTCAAGTTAGGTTAGTCATTTTACTCATTTCATTTTCCAGACTTCTTTCTATGTGTTCAAGTAAATTTCTTCATTCAATAGTAAATTTCATCATTCAATGAAGGTTTTAGTTCATTTCCTTTTGCTATTGCATAATTACACTCTCCAGGGCAAATATTTACTCTTCTTTTCTTCTTTTTCCAAATTATCAACATCTTAAGCAGTAATACTGAGATTGAATGTGCAAACGATTCTCAATACGAACTTGATATTCCTATACACAATGTTGAGTCTGACGAGGAAGAAGAAGATTTGAACCTAGTGCTGAGTTGTTAG

mRNA sequence

ATGATCAGGGTACAGAAGCGAGAAAAAGATAGGCGTTTGGCCAGATTTGAAAGTCGTGAACCAGAATATGGGGAAAAATTCATCCCTCATCTCTACCATTCATTTGAAAGTGCTGGTATAATTCGTCCAGGAGATTTTGCAGTTGCAGTAGTGACTAAAGAGGAAGAATTTGGTCCATGGATCTACCCGTGCCCAGAAAACTTCGAGCTCAACAATTGGAGTACTATTGAATTACGTCATTTGCTGTTAAGATGTCAAAGGCAAATATTTACTCTTCTTTTCTTCTTTTTCCAAATTATCAACATCTTAAGCAGTAATACTGAGATTGAATGTGCAAACGATTCTCAATACGAACTTGATATTCCTATACACAATGTTGAGTCTGACGAGGAAGAAGAAGATTTGAACCTAGTGCTGAGTTGTTAG

Coding sequence (CDS)

ATGATCAGGGTACAGAAGCGAGAAAAAGATAGGCGTTTGGCCAGATTTGAAAGTCGTGAACCAGAATATGGGGAAAAATTCATCCCTCATCTCTACCATTCATTTGAAAGTGCTGGTATAATTCGTCCAGGAGATTTTGCAGTTGCAGTAGTGACTAAAGAGGAAGAATTTGGTCCATGGATCTACCCGTGCCCAGAAAACTTCGAGCTCAACAATTGGAGTACTATTGAATTACGTCATTTGCTGTTAAGATGTCAAAGGCAAATATTTACTCTTCTTTTCTTCTTTTTCCAAATTATCAACATCTTAAGCAGTAATACTGAGATTGAATGTGCAAACGATTCTCAATACGAACTTGATATTCCTATACACAATGTTGAGTCTGACGAGGAAGAAGAAGATTTGAACCTAGTGCTGAGTTGTTAG

Protein sequence

MIRVQKREKDRRLARFESREPEYGEKFIPHLYHSFESAGIIRPGDFAVAVVTKEEEFGPWIYPCPENFELNNWSTIELRHLLLRCQRQIFTLLFFFFQIINILSSNTEIECANDSQYELDIPIHNVESDEEEEDLNLVLSC
Homology
[Close]
BLAST of Lag0031885 vs. NCBI nr
Match: XP_022147181.1 (uncharacterized protein LOC111016192 [Momordica charantia])

HSP 1 Score: 111.7 bits (278), Expect = 5.2e-21
Identity = 64/138 (46.38%), Postives = 84/138 (60.87%), Query Frame = 0 

Query: 1   MIRVQKREKDRRLARFESREPEYGEKFIPHLYHSFESAGIIR---PGDFAVAVVTKE-EE 60
           +IRV   EK +RL+RFE+ E +Y  + +P L HSF SAGII         VA VT+E E+
Sbjct: 237 IIRVWSLEKAKRLSRFENEERDYPRRTVPPLSHSFRSAGIIHQEYDESSVVAGVTEEREQ 296

Query: 61  FGPWIYPCPENFELNNWSTIELRHLLLRCQRQIFTLLFFFFQIINILSSNTEIECANDSQ 120
            GP++YPCP+ FEL+NWS +EL                     +N  S+  EIEC NDS+
Sbjct: 297 VGPFVYPCPDGFELSNWSVLELP------------------SFVNNKSNXXEIECDNDSK 356

Query: 121 YELDIPIHNVESDEEEED 135
           YELD PI+N+ESDEE +D
Sbjct: 357 YELDTPIYNIESDEEIDD 356

[Close]
BLAST of Lag0031885 vs. NCBI nr
Match: XP_022147189.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia])

HSP 1 Score: 109.8 bits (273), Expect = 2.0e-20
Identity = 63/138 (45.65%), Postives = 84/138 (60.87%), Query Frame = 0 

Query: 1    MIRVQKREKDRRLARFESREPEYGEKFIPHLYHSFESAGIIR---PGDFAVAVVTKE-EE 60
            +IRV+  EK +RL+RFE+ E +Y  + +P L HSF SAG I         VA VT+E E+
Sbjct: 1030 IIRVRSLEKAKRLSRFENEERDYPRRIVPPLTHSFRSAGTIHQEYDESSVVAAVTEEREQ 1089

Query: 61   FGPWIYPCPENFELNNWSTIELRHLLLRCQRQIFTLLFFFFQIINILSSNTEIECANDSQ 120
             GP++Y CP+ FEL+NWS I+L                     +N  S+NTEIEC NDS+
Sbjct: 1090 VGPFVYLCPDGFELSNWSVIKLP------------------SFVNNKSNNTEIECDNDSK 1149

Query: 121  YELDIPIHNVESDEEEED 135
            YELD PI+ +ESDEE +D
Sbjct: 1150 YELDTPIYIIESDEEIDD 1149

[Close]
BLAST of Lag0031885 vs. NCBI nr
Match: XP_022143495.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia])

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-18
Identity = 60/138 (43.48%), Postives = 79/138 (57.25%), Query Frame = 0 

Query: 1    MIRVQKREKDRRLARFESREPEYGEKFIPHLYHSFESAGIIR---PGDFAVAVVTKE-EE 60
            +IRV+  EK +RL+RFE+ E +Y  + +P L HSF SAG I     G   VA VT+E E+
Sbjct: 932  IIRVRSLEKAKRLSRFENEERDYPRRTVPPLSHSFRSAGTIHQEYDGSSVVAAVTEEREQ 991

Query: 61   FGPWIYPCPENFELNNWSTIELRHLLLRCQRQIFTLLFFFFQIINILSSNTEIECANDSQ 120
              P++YPCP+ FEL+NWS                               NTEIEC NDS+
Sbjct: 992  VRPFVYPCPDGFELSNWSV------------------------------NTEIECDNDSK 1039

Query: 121  YELDIPIHNVESDEEEED 135
            YELD PI+N+ESD+E +D
Sbjct: 1052 YELDTPIYNIESDKEIDD 1039

[Close]
BLAST of Lag0031885 vs. NCBI nr
Match: XP_022150030.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia])

HSP 1 Score: 100.1 bits (248), Expect = 1.6e-17
Identity = 56/138 (40.58%), Postives = 75/138 (54.35%), Query Frame = 0 

Query: 1   MIRVQKREKDRRLARFESREPEYGEKFIPHLYHSFESAGIIR----PGDFAVAVVTKEEE 60
           +IRV+  EK +RL+RFE+ E +Y  + +P L HS  SAG I         A AV  + E+
Sbjct: 462 IIRVRSMEKAKRLSRFENGERDYSRRTVPPLSHSLRSAGTIHQEYDESSVAAAVTEEREQ 521

Query: 61  FGPWIYPCPENFELNNWSTIELRHLLLRCQRQIFTLLFFFFQIINILSSNTEIECANDSQ 120
             P++YPCP+ F+L+NWS                               NTEIEC NDS+
Sbjct: 522 VEPFVYPCPDGFKLSNWSV------------------------------NTEIECDNDSK 569

Query: 121 YELDIPIHNVESDEEEED 135
           YELD PI+N+ESDEE +D
Sbjct: 582 YELDTPIYNIESDEEIDD 569

[Close]
BLAST of Lag0031885 vs. NCBI nr
Match: XP_022155744.1 (uncharacterized protein LOC111022791 [Momordica charantia])

HSP 1 Score: 79.3 bits (194), Expect = 2.9e-11
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 0 

Query: 1   MIRVQKREKDRRLARFESREPEYGEKFIPHLYHSFESAGIIR---PGDFAVAVVTKE-EE 60
           +IRV+  EK +RL+RFE+ E +Y  + +P L HSF SAG I         VA VT+E E+
Sbjct: 446 IIRVRSLEKAKRLSRFENEERDYPRRIVPPLTHSFRSAGTIHQEYDESSVVAAVTEEREQ 505

Query: 61  FGPWIYPCPENFELNNWSTIEL 79
            GP++Y CP+ FEL+NWS IEL
Sbjct: 506 VGPFVYLCPDGFELSNWSVIEL 527

The following BLAST results are available for this feature:
BLAST of Lag0031885 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022147181.15.2e-2146.38uncharacterized protein LOC111016192 [Momordica charantia][more]
XP_022147189.12.0e-2045.65LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia][more]
XP_022143495.11.1e-1843.48LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia][more]
XP_022150030.11.6e-1740.58LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia][more]
XP_022155744.12.9e-1150.00uncharacterized protein LOC111022791 [Momordica charantia][more]
BLAST of Lag0031885 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0031885.1Lag0031885.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process