Lag0031865 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0031865
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Zinc finger BED domain-containing protein RICESLEEPER 2-like
Location	chr11: 17178122 .. 17178565 (+)
RNA-Seq Expression	Lag0031865
Synteny	Lag0031865

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAAAGGGATGGTTGATAGCATCAAGATGTGTTTGGTTCGTCTGTATAATTTTTACATGTCAAAGTCACATGATGATATTTCTAGTTCTAGTACTCAAAGTTCTAGTAGTGATCATCAACAATCAGAATGTAGTTTTACTTCTTTGAGTATGGAATCTGGTGCAAGTCCGAGTGCATCAAATTTGGCTCGGTACAAGAGAAGAAGAGAAGAAAAAAGTTCTTTAGAATTGAAGGATGATGTGGATCGATATTTATCTGACGAATGTGTGGAACTTAATGATAAATTTGATGTTTTGGCTTGGTGGAAACTGAATGAGTCTAGATATCAAGTTTTATCAAAAATCGCTCGAGATGTTTTGGCAGTTCCAGTGTCTACCGTGGCTTCTGAATCAGCATTTAGTACTGGAGGAGGATTCTTAATTCTTGTAGAAGTTCTTTGA

mRNA sequence

ATGGTTAAAGGGATGGTTGATAGCATCAAGATGTGTTTGGTTCGTCTGTATAATTTTTACATGTCAAAGTCACATGATGATATTTCTAGTTCTAGTACTCAAAGTTCTAGTAGTGATCATCAACAATCAGAATGTAGTTTTACTTCTTTGAGTATGGAATCTGGTGCAAGTCCGAGTGCATCAAATTTGGCTCGGTACAAGAGAAGAAGAGAAGAAAAAAGTTCTTTAGAATTGAAGGATGATGTGGATCGATATTTATCTGACGAATGTGTGGAACTTAATGATAAATTTGATGTTTTGGCTTGGTGGAAACTGAATGAGTCTAGATATCAAGTTTTATCAAAAATCGCTCGAGATGTTTTGGCAGTTCCAGTGTCTACCGTGGCTTCTGAATCAGCATTTAGTACTGGAGGAGGATTCTTAATTCTTGTAGAAGTTCTTTGA

Coding sequence (CDS)

ATGGTTAAAGGGATGGTTGATAGCATCAAGATGTGTTTGGTTCGTCTGTATAATTTTTACATGTCAAAGTCACATGATGATATTTCTAGTTCTAGTACTCAAAGTTCTAGTAGTGATCATCAACAATCAGAATGTAGTTTTACTTCTTTGAGTATGGAATCTGGTGCAAGTCCGAGTGCATCAAATTTGGCTCGGTACAAGAGAAGAAGAGAAGAAAAAAGTTCTTTAGAATTGAAGGATGATGTGGATCGATATTTATCTGACGAATGTGTGGAACTTAATGATAAATTTGATGTTTTGGCTTGGTGGAAACTGAATGAGTCTAGATATCAAGTTTTATCAAAAATCGCTCGAGATGTTTTGGCAGTTCCAGTGTCTACCGTGGCTTCTGAATCAGCATTTAGTACTGGAGGAGGATTCTTAATTCTTGTAGAAGTTCTTTGA

Protein sequence

MVKGMVDSIKMCLVRLYNFYMSKSHDDISSSSTQSSSSDHQQSECSFTSLSMESGASPSASNLARYKRRREEKSSLELKDDVDRYLSDECVELNDKFDVLAWWKLNESRYQVLSKIARDVLAVPVSTVASESAFSTGGGFLILVEVL

Homology

[Close]

BLAST of Lag0031865 vs. NCBI nr
Match: KAA0031947.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 6.6e-27
Identity = 80/149 (53.69%), Postives = 105/149 (70.47%), Query Frame = 0


Query: 1   MVKGMVDSIKMCLVRLYNFYMSKS-----HDDISSSST---QSSSSDHQQSECSFTSLSM 60
           MVK +VD I+  L+RLYN Y S++      +D+S  +    Q  SSD  +   S T++  
Sbjct: 522 MVKVLVDGIQAYLMRLYNCYKSQNGGFAFRNDLSGQAVVCEQVESSDSLKVLSSGTTMET 581

Query: 61  ESGASPSASNLARYKRRREEKSSLELKDDVDRYLSDECVELNDKFDVLAWWKLNESRYQV 120
           ++    S   L+RYKRRR+E+++LEL++DVDRYLSD C ELND+FDVL WWKLN  +Y +
Sbjct: 582 DA----SCRVLSRYKRRRQEQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNAVKYPI 641

Query: 121 LSKIARDVLAVPVSTVASESAFSTGGGFL 142
           LSKIA+D+ AVPVSTVASESAFSTGG  L
Sbjct: 642 LSKIAQDIFAVPVSTVASESAFSTGGRIL 666

[Close]

BLAST of Lag0031865 vs. NCBI nr
Match: KAA0067548.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-26
Identity = 77/144 (53.47%), Postives = 100/144 (69.44%), Query Frame = 0


Query: 2   VKGMVDSIKMCLVRLYNFYMSKSHDDISSSSTQSSSSDHQQSECSFTSLSMESGAS---- 61
           VK +VD I+  L+RLYN Y S++ D    +     +   +Q E S +   + SG +    
Sbjct: 523 VKVLVDGIQAYLMRLYNCYKSQNGDFAFRNDLSGQAVVCEQVESSDSLKVLSSGTTMETD 582

Query: 62  PSASNLARYKRRREEKSSLELKDDVDRYLSDECVELNDKFDVLAWWKLNESRYQVLSKIA 121
            S   L+RYKRRR+E+++LEL++DVDRYLSD C ELND+FDVL WWKLN  +Y +LSKIA
Sbjct: 583 ASCRVLSRYKRRRQEQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNAVKYPILSKIA 642

Query: 122 RDVLAVPVSTVASESAFSTGGGFL 142
           +D+ AVPVSTVASESAFSTGG  L
Sbjct: 643 QDIFAVPVSTVASESAFSTGGRIL 666

[Close]

BLAST of Lag0031865 vs. NCBI nr
Match: TYK16769.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-26
Identity = 77/144 (53.47%), Postives = 100/144 (69.44%), Query Frame = 0


Query: 2   VKGMVDSIKMCLVRLYNFYMSKSHDDISSSSTQSSSSDHQQSECSFTSLSMESGAS---- 61
           VK +VD I+  L+RLYN Y S++ D    +     +   +Q E S +   + SG +    
Sbjct: 523 VKVLVDGIQAYLMRLYNCYKSQNGDFAFRNDLSGQAVVCEQVESSDSLKVLSSGTTMETD 582

Query: 62  PSASNLARYKRRREEKSSLELKDDVDRYLSDECVELNDKFDVLAWWKLNESRYQVLSKIA 121
            S   L+RYKRRR+E+++LEL++DVDRYLSD C ELND+FDVL WWKLN  +Y +LSKIA
Sbjct: 583 ASCRVLSRYKRRRQEQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNAVKYPILSKIA 642

Query: 122 RDVLAVPVSTVASESAFSTGGGFL 142
           +D+ AVPVSTVASESAFSTGG  L
Sbjct: 643 QDIFAVPVSTVASESAFSTGGRIL 666

[Close]

BLAST of Lag0031865 vs. NCBI nr
Match: KAA0050616.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-26
Identity = 77/144 (53.47%), Postives = 100/144 (69.44%), Query Frame = 0


Query: 2   VKGMVDSIKMCLVRLYNFYMSKSHDDISSSSTQSSSSDHQQSECSFTSLSMESGAS---- 61
           VK +VD I+  L+RLYN Y S++ D    +     +   +Q E S +   + SG +    
Sbjct: 691 VKVLVDGIQAYLMRLYNCYKSQNGDFAFRNDLSGQAVVCEQVESSDSLKVLSSGTTMETD 750

Query: 62  PSASNLARYKRRREEKSSLELKDDVDRYLSDECVELNDKFDVLAWWKLNESRYQVLSKIA 121
            S   L+RYKRRR+E+++LEL++DVDRYLSD C ELND+FDVL WWKLN  +Y +LSKIA
Sbjct: 751 ASCRVLSRYKRRRQEQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNAVKYPILSKIA 810

Query: 122 RDVLAVPVSTVASESAFSTGGGFL 142
           +D+ AVPVSTVASESAFSTGG  L
Sbjct: 811 QDIFAVPVSTVASESAFSTGGRIL 834

[Close]

BLAST of Lag0031865 vs. NCBI nr
Match: KAA0065439.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa] >TYK07824.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-26
Identity = 77/144 (53.47%), Postives = 100/144 (69.44%), Query Frame = 0


Query: 2   VKGMVDSIKMCLVRLYNFYMSKSHDDISSSSTQSSSSDHQQSECSFTSLSMESGAS---- 61
           VK +VD I+  L+RLYN Y S++ D    +     +   +Q E S +   + SG +    
Sbjct: 523 VKVLVDGIQAYLMRLYNCYKSQNGDFAFRNDLSGQAVVCEQVESSDSLKVLSSGTTMETD 582

Query: 62  PSASNLARYKRRREEKSSLELKDDVDRYLSDECVELNDKFDVLAWWKLNESRYQVLSKIA 121
            S   L+RYKRRR+E+++LEL++DVDRYLSD C ELND+FDVL WWKLN  +Y +LSKIA
Sbjct: 583 ASCRVLSRYKRRRQEQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNAVKYPILSKIA 642

Query: 122 RDVLAVPVSTVASESAFSTGGGFL 142
           +D+ AVPVSTVASESAFSTGG  L
Sbjct: 643 QDIFAVPVSTVASESAFSTGGRIL 666

[Close]

BLAST of Lag0031865 vs. ExPASy Swiss-Prot
Match: P08770 (Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 4.5e-10
Identity = 44/133 (33.08%), Postives = 70/133 (52.63%), Query Frame = 0


Query: 6   VDSIKMCLVRLYNFYMSKSHDDISSSSTQSSSSDHQQSECSFTSLSMESGASPSASNLAR 65
           VD     + +LY FY S S     + +T + S D    E                     
Sbjct: 608 VDDFVRVIRKLYQFYSSCSPSAPKTKTTTNDSMDDTLME-------------NEDDEFQN 667

Query: 66  YKRRREEKSSLELKDDVDRYLSDECVELNDKFDVLAWWKLNESRYQVLSKIARDVLAVPV 125
           Y    ++   +E  +++D+Y+S+  ++ + +FD+L+WW+   + Y +L++IARDVLA+ V
Sbjct: 668 YLHELKDYDQVE-SNELDKYMSEPLLKHSGQFDILSWWRGRVAEYPILTQIARDVLAIQV 726

Query: 126 STVASESAFSTGG 139
           STVASESAFS GG
Sbjct: 728 STVASESAFSAGG 726

[Close]

BLAST of Lag0031865 vs. ExPASy Swiss-Prot
Match: P03010 (Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.5e-10
Identity = 44/133 (33.08%), Postives = 70/133 (52.63%), Query Frame = 0


Query: 6   VDSIKMCLVRLYNFYMSKSHDDISSSSTQSSSSDHQQSECSFTSLSMESGASPSASNLAR 65
           VD     + +LY FY S S     + +T + S D    E                     
Sbjct: 577 VDDFVRVIRKLYQFYSSCSPSAPKTKTTTNDSMDDTLME-------------NEDDEFQN 636

Query: 66  YKRRREEKSSLELKDDVDRYLSDECVELNDKFDVLAWWKLNESRYQVLSKIARDVLAVPV 125
           Y    ++   +E  +++D+Y+S+  ++ + +FD+L+WW+   + Y +L++IARDVLA+ V
Sbjct: 637 YLHELKDYDQVE-SNELDKYMSEPLLKHSGQFDILSWWRGRVAEYPILTQIARDVLAIQV 695

Query: 126 STVASESAFSTGG 139
           STVASESAFS GG
Sbjct: 697 STVASESAFSAGG 695

[Close]

BLAST of Lag0031865 vs. ExPASy Swiss-Prot
Match: B9FJG3 (Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0239150 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.5e-09
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 0


Query: 71  EEKSSLELKDDVDRYLSDECVELNDKFDVLAWWKLNESRYQVLSKIARDVLAVPVSTVAS 130
           E  +S   K ++++YL +       +FD+L WWKLN  +Y  LSK+ARD+LA+P+S V+S
Sbjct: 607 EIATSQPTKSELEQYLDESLTPRIQEFDILNWWKLNTLKYPTLSKMARDILAIPMSMVSS 666

Query: 131 -ESAFSTGGGFLIL 144
             S FS G G  +L
Sbjct: 667 GNSIFSAGTGTRML 680

[Close]

BLAST of Lag0031865 vs. ExPASy Swiss-Prot
Match: Q9M2N5 (Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=3702 GN=HAT PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.2e-08
Identity = 29/75 (38.67%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 60  ASNLARYKRRREEKSSLELKDDVDRYLSDECVELNDKFDVLAWWKLNESRYQVLSKIARD 119
           A  L+ +     E +   LK ++D+YL +  +    +FDVL WWK N+ +Y  LSK+ARD
Sbjct: 571 ADGLSDFDTYIMETTGQNLKSELDQYLDETLLPRVQEFDVLDWWKQNKLKYPTLSKMARD 630

Query: 120 VLAVPVSTVASESAF 135
           +L++PVS  A +  F
Sbjct: 631 ILSIPVSAAAFDYVF 645

[Close]

BLAST of Lag0031865 vs. ExPASy Swiss-Prot
Match: Q6AVI0 (Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0733400 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.2e-08
Identity = 30/74 (40.54%), Postives = 47/74 (63.51%), Query Frame = 0


Query: 71  EEKSSLELKDDVDRYLSDECVELNDKFDVLAWWKLNESRYQVLSKIARDVLAVPVSTVAS 130
           E  +S   K ++++YL +       +FD+L WWKLN  ++  LS++ARD+LA+P+S V+S
Sbjct: 607 EIATSQPTKSELEQYLDESLTPRIQEFDILNWWKLNTLKFPTLSRMARDILAIPMSMVSS 666

Query: 131 -ESAFSTGGGFLIL 144
             S FS G G  +L
Sbjct: 667 GNSIFSAGTGTRML 680

The following BLAST results are available for this feature:

BLAST of Lag0031865 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031947.1	6.6e-27	53.69	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
KAA0067548.1	1.1e-26	53.47	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
TYK16769.1	1.1e-26	53.47	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
KAA0050616.1	1.1e-26	53.47	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
KAA0065439.1	1.1e-26	53.47	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]

BLAST of Lag0031865 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P08770	4.5e-10	33.08	Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2	[more]
P03010	4.5e-10	33.08	Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1	[more]
B9FJG3	6.5e-09	43.24	Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. j...	[more]
Q9M2N5	4.2e-08	38.67	Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=...	[more]
Q6AVI0	4.2e-08	40.54	Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. j...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008906	HAT, C-terminal dimerisation domain	PFAM	PF05699	Dimer_Tnp_hAT	coord: 82..138 e-value: 9.1E-21 score: 73.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..75
None	No IPR available	PANTHER	PTHR23272:SF130	OS01G0698300 PROTEIN	coord: 3..136
None	No IPR available	PANTHER	PTHR23272	BED FINGER-RELATED	coord: 3..136
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 14..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0031865.1	Lag0031865.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0046983	protein dimerization activity