Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGTCAACACAACCCTTCCCAAGTCGTCTTCAAAAGAAAAGCAACAAACAAACGGAACACATCACTTAACATTAAAGGAAAGACAGAAGAAAATCTATCCTTTCGCTGATGCTGACATTCCTGATATGTTGGAACAACTACTGGAAGCGCAACTGATAGAGATTCCTACGTGTAAACGACCAGAAGAGATGGAGAAAGTCGATGATCTCAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCATTCTAAAGGACTTAATTTTAAAGCTGGCTAAGGAAGGCAAAATTGAGCTCGACCTTGATGAAGTAGCCCAATCAAATCTTGCTACAATCAAAGGAAAGAGCAAACATCAAAGAAAAAAGGATCCTAAGAAACTTCAACCCAAGAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAGAACCTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAAGAGTGAACAAAGGACTTCCGTCTTCGATCGCATCAGGCCTCCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCAACCTCCACTCGACCCTCAGCTTTCCAAAGGCTAAGTGTTTCCACGTCAAAGAAAAGTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGGTCAATCTAAAAGAAAGATGGATAACTTGGAGATGAAACTTTTTGATGAAGTAAACAACGACAAGAAGCTTCAAAGTAGCGTTTCGTCACGTATGAAGAGGACGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAACCAAATCTCATTATCTTGACCAACCCTACAAGTCAAAGATCTGATCAAGACCATGATGAAGATAAGGGCTTTTAAAATGTAAGAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGAGCAAAAATCTTGAACTACGTTATGACTTGAGCCCTATTCCATAAGGGTACGTAGGAAGCTTAAAGAAAACTTTAAGTTCAGTCTCTATAAACAAAAAAAAAGGTTCTTCGCTACAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTCTTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCATTGTTCCTTCTCCAAGTTTACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCGCTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTCGCTGGAGTTCCTTCTCCCCAAGTTCAAAGGTTCTAACGCGCTTCGTTGCAGTTCCTTCTCTCCAAGGTCGAAGGTTCTCACGCGCTGCGTTGCAGCTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCACTGCAACTCCTTCCTCCAAGTTCGAAGGTTCTCCGCTGCTGCAGTTCATTCTTCCAAGTTCGAAGGTTCTCACGTCGCTTCACTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTGATTCGCTGCAGTTCTTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTCCTCATGCTATGCTCGGCTGCACTGCTGCGCTACTTCCTAAAGTCCAAAGACGTCAATTGTCCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCAAAGGTCCTCATGCTACGCTCGGCTGCACTGCTGCGCTACTTCCTAAAGTCCAAAGACGTCAATTGTCCTTGTACTTATGCTGA
mRNA sequence
ATGGTTGTCAACACAACCCTTCCCAAGTCGTCTTCAAAAGAAAAGCAACAAACAAACGGAACACATCACTTAACATTAAAGGAAAGACAGAAGAAAATCTATCCTTTCGCTGATGCTGACATTCCTGATATGTTGGAACAACTACTGGAAGCGCAACTGATAGAGATTCCTACGTGTAAACGACCAGAAGAGATGGAGAAAGTCGATGATCTCAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCATTCTAAAGGACTTAATTTTAAAGCTGGCTAAGGAAGGCAAAATTGAGCTCGACCTTGATGAAGTAGCCCAATCAAATCTTGCTACAATCAAAGGAAAGAGCAAACATCAAAGAAAAAAGGATCCTAAGAAACTTCAACCCAAGAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAGAACCTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAAGAGTGAACAAAGGACTTCCGTCTTCGATCGCATCAGGCCTCCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCAACCTCCACTCGACCCTCAGCTTTCCAAAGGCTAAGTGTTTCCACGTCAAAGAAAAGTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGGTCAATCTAAAAGAAAGATGGATAACTTGGAGATGAAACTTTTTGATGAAGTAAACAACGACAAGAAGCTTCAAAGTAGCGTTTCGTCACGTATGAAGAGGACGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCATTGTTCCTTCTCCAAGTTTACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCGCTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTCGCTGGAGTTCCTTCTCCCCAAGTTCAAAGGTTCTAACGCGCTTCGTTGCAGTTCCTTCTCTCCAAGGTCGAAGGTTCTCACGCGCTGCGTTGCAGCTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCACTGCAACTCCTTCCTCCAAGTTCGAAGGTTCTCCGCTGCTGCAGTTCATTCTTCCAAGTTCGAAGGTTCTCACGTCGCTTCACTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTGATTCGCTGCAGTTCTTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTCCTCATGCTATGCTCGGCTGCACTGCTGCGCTACTTCCTAAAGTCCAAAGACGTCAATTGTCCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCAAAGGTCCTCATGCTACGCTCGGCTGCACTGCTGCGCTACTTCCTAAAGTCCAAAGACGTCAATTGTCCTTGTACTTATGCTGA
Coding sequence (CDS)
ATGGTTGTCAACACAACCCTTCCCAAGTCGTCTTCAAAAGAAAAGCAACAAACAAACGGAACACATCACTTAACATTAAAGGAAAGACAGAAGAAAATCTATCCTTTCGCTGATGCTGACATTCCTGATATGTTGGAACAACTACTGGAAGCGCAACTGATAGAGATTCCTACGTGTAAACGACCAGAAGAGATGGAGAAAGTCGATGATCTCAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCATTCTAAAGGACTTAATTTTAAAGCTGGCTAAGGAAGGCAAAATTGAGCTCGACCTTGATGAAGTAGCCCAATCAAATCTTGCTACAATCAAAGGAAAGAGCAAACATCAAAGAAAAAAGGATCCTAAGAAACTTCAACCCAAGAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAGAACCTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAAGAGTGAACAAAGGACTTCCGTCTTCGATCGCATCAGGCCTCCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCAACCTCCACTCGACCCTCAGCTTTCCAAAGGCTAAGTGTTTCCACGTCAAAGAAAAGTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGGTCAATCTAAAAGAAAGATGGATAACTTGGAGATGAAACTTTTTGATGAAGTAAACAACGACAAGAAGCTTCAAAGTAGCGTTTCGTCACGTATGAAGAGGACGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCATTGTTCCTTCTCCAAGTTTACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCGCTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTCGCTGGAGTTCCTTCTCCCCAAGTTCAAAGGTTCTAACGCGCTTCGTTGCAGTTCCTTCTCTCCAAGGTCGAAGGTTCTCACGCGCTGCGTTGCAGCTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCACTGCAACTCCTTCCTCCAAGTTCGAAGGTTCTCCGCTGCTGCAGTTCATTCTTCCAAGTTCGAAGGTTCTCACGTCGCTTCACTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTGATTCGCTGCAGTTCTTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTCCTCATGCTATGCTCGGCTGCACTGCTGCGCTACTTCCTAAAGTCCAAAGACGTCAATTGTCCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCAAAGGTCCTCATGCTACGCTCGGCTGCACTGCTGCGCTACTTCCTAAAGTCCAAAGACGTCAATTGTCCTTGTACTTATGCTGA
Protein sequence
MVVNTTLPKSSSKEKQQTNGTHHLTLKERQKKIYPFADADIPDMLEQLLEAQLIEIPTCKRPEEMEKVDDLKYCKYHRVIGHPVERCFILKDLILKLAKEGKIELDLDEVAQSNLATIKGKSKHQRKKDPKKLQPKRKRSKKFSQPQQLVMLNKSFSKTFHKKEKENLATSYCIDVEEVDNSKKSEQRTSVFDRIRPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSGQSKRKMDNLEMKLFDEVNNDKKLQSSVSSRMKRTFSVLINTEGSLKFEGSSLYPAALFLLQVYCYVVPPPSAKDLMWCAVALFPLLSSSMVLTQLRWSSFSPSSKVLTRFVAVPSLQGRRFSRAALQLFLPKFEGSRTSLQFLLPNSKVLTRFTATPSSKFEGSPLLQFILPSSKVLTSLHCSSFLQVRRFSRDSLQFFPPSSKVLTRFVAVPSSKFEGPHAMLGCTAALLPKVQRRQLSSRCAASFSKFKGPHATLGCTAALLPKVQRRQLSLYLC
Homology
BLAST of Lag0031823 vs. NCBI nr
Match:
KAA0056121.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 254.2 bits (648), Expect = 2.5e-63
Identity = 165/316 (52.22%), Postives = 209/316 (66.14%), Query Frame = 0
Query: 1 MVVNTTLPKSSSKEKQQTNGTHH-------LTLKERQKKIYPFADADIPDMLEQLLEAQL 60
MVV+ T KS SK K+ H TLKERQ+K+YPF D+D+ DMLEQLLE QL
Sbjct: 398 MVVHATPLKSFSKRKETKIERKHDGDEKRQSTLKERQEKVYPFPDSDVADMLEQLLENQL 457
Query: 61 IEIPTCKRPEEMEKVDDLKYCKYHRVIGHPVERCFILKDLILKLAKEGKIELDLDEVAQS 120
I++P CKRPE+ KVDD YCKYHRVI HPVE+CF+LK+LILKLA+E KIELD+DEVAQ+
Sbjct: 458 IQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDIDEVAQT 517
Query: 121 NLATIKGKSKHQRKKDPKKLQPKRK--------RSKKFSQPQQLVMLNKSFSKTFHKKEK 180
N A I+ S + KD LQ +R RS P++++ + + + + +
Sbjct: 518 NHA-IEMTSNPIKGKDEDFLQLRRSITLAEFLPRSFLEDDPEEILEVTACHAASIVEVD- 577
Query: 181 ENLATSYCIDVEEVDNSKKSEQRTSVFDRIRPPTTRPSVFQRMSMAATEEENQCSMSTST 240
N +S +EV+NS + QRTSVFDRI+P TTR SVFQR+S+A EEENQC T
Sbjct: 578 NNYGSS-----KEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSVATKEEENQCPTFIYT 637
Query: 241 RPSAFQRLSVSTSKKSRPSTSVFDRLKVTSGQSKRKMDNLEMKLFDEVNNDKKLQSSVSS 300
R S +RLS+ST KK RPSTS FDRLK+T+ Q +R+M + + K F E N+D K+ S V S
Sbjct: 638 RTSTSKRLSISTLKKDRPSTSSFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPS 697
Query: 301 RMKRTFSVLINTEGSL 302
RMKR V INTEGSL
Sbjct: 698 RMKRKLFVDINTEGSL 706
BLAST of Lag0031823 vs. NCBI nr
Match:
KAA0040811.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 252.3 bits (643), Expect = 9.4e-63
Identity = 171/405 (42.22%), Postives = 219/405 (54.07%), Query Frame = 0
Query: 1 MVVNTTLPKSSSKEKQQTNGTHH-------LTLKERQKKIYPFADADIPDMLEQLLEAQL 60
M+V T KS SK K++ + +H TL+ERQKK+YPF D+D+ DMLEQL+E QL
Sbjct: 183 MLVQETPLKSFSKRKERKHERNHNGDEKRRPTLRERQKKVYPFPDSDVADMLEQLIEKQL 242
Query: 61 IEIPTCKRPEEMEKVDDLKYCKYHRVIGHPVERCFILKDLILKLAKEGKIELDLDEVAQS 120
I++P CKRPE+ KVDD YCKYHRVI H VE+CF+LK+LILKL +E KIELD+DEVAQ+
Sbjct: 243 IQLPKCKRPEQAGKVDDPNYCKYHRVISHHVEKCFVLKELILKLTRENKIELDIDEVAQT 302
Query: 121 N----------------------------------------------------------- 180
N
Sbjct: 303 NHVAVNMTSSVPPSILLYDQRESLIQFGTFEPILVRFQQKVMTSNSQNKEEPIEDEGEEW 362
Query: 181 -------------------------LATIKGKSKHQRKKDPKKLQPKRKRSKKFSQPQQL 240
I K K +R K K +P + + + F QP+Q
Sbjct: 363 IVVAHKKERQTSSVQTNSHFHQKHSKGNISHKKKGRRNKKMWKSKPIKGKDEDFLQPRQS 422
Query: 241 VMLNKSFSKTF---HKKEKENLATSYCIDV----------EEVDNSKKSEQRTSVFDRIR 300
+ L + F ++F H KE + + + EEVDNS + +QRTSVFDRI+
Sbjct: 423 ITLAEFFPRSFLEDHPKEILEVTACHTTSIVEFDNNYDSYEEVDNSNEIKQRTSVFDRIK 482
Query: 301 PPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSG 302
P TTR SVFQR+S+ EEENQC ST TR SAF+ LS+STSKK RPSTS FDRLK+ +
Sbjct: 483 PLTTRSSVFQRLSITTKEEENQCPTSTCTRTSAFKSLSISTSKKDRPSTSAFDRLKMIND 542
BLAST of Lag0031823 vs. NCBI nr
Match:
KAA0065984.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28929.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 248.1 bits (632), Expect = 1.8e-61
Identity = 163/316 (51.58%), Postives = 204/316 (64.56%), Query Frame = 0
Query: 1 MVVNTTLPKSSSKEKQQTNGTHH-------LTLKERQKKIYPFADADIPDMLEQLLEAQL 60
MVV T KS SK K+ + +H TL+ERQKK+YPF D+D+ DMLEQL+E QL
Sbjct: 111 MVVQETPLKSFSKRKETKHERNHDDDEKRRPTLRERQKKVYPFPDSDVTDMLEQLIEKQL 170
Query: 61 IEIPTCKRPEEMEKVDDLKYCKYHRVIGHPVERCFILKDLILKLAKEGKIELDLDEVAQS 120
I++ CKRP + KVDD YCKYHRVI HPVE+CF+LK+LILKLA+E KI+LD+DE
Sbjct: 171 IQLLGCKRPGQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLARENKIQLDIDE---- 230
Query: 121 NLATIKGKSKHQRKKDPKKLQPKRK--------RSKKFSQPQQLVMLNKSFSKTFHKKEK 180
IKG KD LQP+R RS P++++ + + + E
Sbjct: 231 ---PIKG-------KDEDFLQPRRSITLAEFLPRSFFEDHPEEVIEVTACHTTSI--VEV 290
Query: 181 ENLATSYCIDVEEVDNSKKSEQRTSVFDRIRPPTTRPSVFQRMSMAATEEENQCSMSTST 240
+N SY EEVDNS + +QRTSVFDRI+P TTR VFQR+SMA EEENQC ST T
Sbjct: 291 DNNYDSY----EEVDNSNEIKQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYT 350
Query: 241 RPSAFQRLSVSTSKKSRPSTSVFDRLKVTSGQSKRKMDNLEMKLFDEVNNDKKLQSSVSS 300
R SAF+RLS+STSKK RPSTS FDRLK+ + Q +R+M +L+ K F E N+D K+ S + S
Sbjct: 351 RTSAFKRLSISTSKKHRPSTSAFDRLKMKNDQQQREMKSLKAKPFHEENDDDKIHSHIPS 403
Query: 301 RMKRTFSVLINTEGSL 302
R SV IN EGSL
Sbjct: 411 ---RKLSVDINIEGSL 403
BLAST of Lag0031823 vs. NCBI nr
Match:
KAA0032121.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 247.7 bits (631), Expect = 2.3e-61
Identity = 165/342 (48.25%), Postives = 216/342 (63.16%), Query Frame = 0
Query: 1 MVVNTTLPKSSSKEKQQTNGTHH-------LTLKERQKKIYPFADADIPDMLEQLLEAQL 60
M+V T KS SK K+ + +H TL+ERQKK+YPF D+D+ DMLEQL+E QL
Sbjct: 372 MLVQETPLKSFSKRKETKHKRNHDGDEKRRPTLRERQKKVYPFPDSDVADMLEQLIEKQL 431
Query: 61 IEIPTCKRPEEMEKVDDLKYCKYHRVIGHPVERCFILKDLILKLAKEGKIELDLDEVAQS 120
I++P CKRPE++ KVDD YCKYHRVI H VE+CF+LK+LI KLA+E KIELD+DEVAQ+
Sbjct: 432 IQLPECKRPEQVGKVDDPNYCKYHRVISHLVEKCFVLKELIRKLARENKIELDIDEVAQT 491
Query: 121 NLATIKGKSK--------HQRKK-------DPKKLQPKRKRSKKFSQPQQ---------- 180
N + S QRK +P ++ ++K SQ ++
Sbjct: 492 NHVAVNMTSSVPLSILLYDQRKSLIQFGTFEPILVRFQQKTMTSNSQNKEEPSEDEGEEW 551
Query: 181 LVMLNKSFSKTFHKKEKENLA--TSYCIDV-------EEVDNSKKSEQRTSVFDRIRPPT 240
+ L +SF + ++ E A T+ ++V EE+DNS + +QRTSVFD I+P T
Sbjct: 552 IEFLPRSFLEDHPEEILEVTACHTTSIVEVDNNYDSYEEMDNSNEIKQRTSVFDCIKPLT 611
Query: 241 TRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSGQSK 300
TR SVFQR+SMA +EENQC T + SAF+RLS+S SKK RPST FDRLK+T+ Q +
Sbjct: 612 TRSSVFQRLSMATKKEENQCPTFTYAQTSAFKRLSISISKKHRPSTYTFDRLKMTNDQQQ 671
Query: 301 RKMDNLEMKLFDEVNNDKKLQSSVSSRMKRTFSVLINTEGSL 302
R+M L+ K F E N+D K+ S V SRMKR SV INTEGSL
Sbjct: 672 REMKTLKAKPFQEENDDDKIHSRVPSRMKRKLSVDINTEGSL 713
BLAST of Lag0031823 vs. NCBI nr
Match:
TYK16519.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 246.5 bits (628), Expect = 5.1e-61
Identity = 170/405 (41.98%), Postives = 218/405 (53.83%), Query Frame = 0
Query: 1 MVVNTTLPKSSSKEKQQTNGTHH-------LTLKERQKKIYPFADADIPDMLEQLLEAQL 60
M V T KS SK K+ + +H TL+ERQKK+YPF ++D+ DMLEQL+E QL
Sbjct: 111 MFVQETPLKSFSKRKETKHKRNHDGDEKQRPTLRERQKKVYPFPNSDVADMLEQLIEKQL 170
Query: 61 IEIPTCKRPEEMEKVDDLKYCKYHRVIGHPVERCFILKDLILKLAKEGKIELDLDEVAQS 120
I++P CKR E++ KVDD YCKY+RVI HPVE+CF+LK+LILKLA+E KIELD+DEVAQ+
Sbjct: 171 IQLPECKRLEQVGKVDDSNYCKYYRVISHPVEKCFVLKELILKLARENKIELDIDEVAQT 230
Query: 121 N----------------------------------------------------------- 180
N
Sbjct: 231 NHVAVNMTSNVPPSILLYDQRESLIQFGTFEPIHVQFQQKTMTSNSQNKEEPSEDEGEEW 290
Query: 181 -------------------------LATIKGKSKHQRKKDPKKLQPKRKRSKKFSQPQQL 240
I K K +R K K +P + + + F QP++
Sbjct: 291 IGVAHKKERQTSFVQTNSHFHQKNSKGNISHKKKGRRNKKMWKPKPIKGKDEHFLQPRRS 350
Query: 241 VMLNKSFSKTFHKKEKENLA------TSYCIDV-------EEVDNSKKSEQRTSVFDRIR 300
+ L + + F + E + T+ ++V EEVDNS + +QRTSVFDRI+
Sbjct: 351 ITLAEFLPRIFLEDHPEEILEVTACHTTNIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIK 410
Query: 301 PPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSG 302
P TTR VFQR+SMA EEENQC ST R SAF+RLS+STSKK RPSTS FDRLK+T+
Sbjct: 411 PLTTRSLVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNN 470
BLAST of Lag0031823 vs. ExPASy TrEMBL
Match:
A0A5A7URH1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17350G00010 PE=4 SV=1)
HSP 1 Score: 254.2 bits (648), Expect = 1.2e-63
Identity = 165/316 (52.22%), Postives = 209/316 (66.14%), Query Frame = 0
Query: 1 MVVNTTLPKSSSKEKQQTNGTHH-------LTLKERQKKIYPFADADIPDMLEQLLEAQL 60
MVV+ T KS SK K+ H TLKERQ+K+YPF D+D+ DMLEQLLE QL
Sbjct: 398 MVVHATPLKSFSKRKETKIERKHDGDEKRQSTLKERQEKVYPFPDSDVADMLEQLLENQL 457
Query: 61 IEIPTCKRPEEMEKVDDLKYCKYHRVIGHPVERCFILKDLILKLAKEGKIELDLDEVAQS 120
I++P CKRPE+ KVDD YCKYHRVI HPVE+CF+LK+LILKLA+E KIELD+DEVAQ+
Sbjct: 458 IQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDIDEVAQT 517
Query: 121 NLATIKGKSKHQRKKDPKKLQPKRK--------RSKKFSQPQQLVMLNKSFSKTFHKKEK 180
N A I+ S + KD LQ +R RS P++++ + + + + +
Sbjct: 518 NHA-IEMTSNPIKGKDEDFLQLRRSITLAEFLPRSFLEDDPEEILEVTACHAASIVEVD- 577
Query: 181 ENLATSYCIDVEEVDNSKKSEQRTSVFDRIRPPTTRPSVFQRMSMAATEEENQCSMSTST 240
N +S +EV+NS + QRTSVFDRI+P TTR SVFQR+S+A EEENQC T
Sbjct: 578 NNYGSS-----KEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSVATKEEENQCPTFIYT 637
Query: 241 RPSAFQRLSVSTSKKSRPSTSVFDRLKVTSGQSKRKMDNLEMKLFDEVNNDKKLQSSVSS 300
R S +RLS+ST KK RPSTS FDRLK+T+ Q +R+M + + K F E N+D K+ S V S
Sbjct: 638 RTSTSKRLSISTLKKDRPSTSSFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPS 697
Query: 301 RMKRTFSVLINTEGSL 302
RMKR V INTEGSL
Sbjct: 698 RMKRKLFVDINTEGSL 706
BLAST of Lag0031823 vs. ExPASy TrEMBL
Match:
A0A5A7TGM1 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold333G00260 PE=4 SV=1)
HSP 1 Score: 252.3 bits (643), Expect = 4.5e-63
Identity = 171/405 (42.22%), Postives = 219/405 (54.07%), Query Frame = 0
Query: 1 MVVNTTLPKSSSKEKQQTNGTHH-------LTLKERQKKIYPFADADIPDMLEQLLEAQL 60
M+V T KS SK K++ + +H TL+ERQKK+YPF D+D+ DMLEQL+E QL
Sbjct: 183 MLVQETPLKSFSKRKERKHERNHNGDEKRRPTLRERQKKVYPFPDSDVADMLEQLIEKQL 242
Query: 61 IEIPTCKRPEEMEKVDDLKYCKYHRVIGHPVERCFILKDLILKLAKEGKIELDLDEVAQS 120
I++P CKRPE+ KVDD YCKYHRVI H VE+CF+LK+LILKL +E KIELD+DEVAQ+
Sbjct: 243 IQLPKCKRPEQAGKVDDPNYCKYHRVISHHVEKCFVLKELILKLTRENKIELDIDEVAQT 302
Query: 121 N----------------------------------------------------------- 180
N
Sbjct: 303 NHVAVNMTSSVPPSILLYDQRESLIQFGTFEPILVRFQQKVMTSNSQNKEEPIEDEGEEW 362
Query: 181 -------------------------LATIKGKSKHQRKKDPKKLQPKRKRSKKFSQPQQL 240
I K K +R K K +P + + + F QP+Q
Sbjct: 363 IVVAHKKERQTSSVQTNSHFHQKHSKGNISHKKKGRRNKKMWKSKPIKGKDEDFLQPRQS 422
Query: 241 VMLNKSFSKTF---HKKEKENLATSYCIDV----------EEVDNSKKSEQRTSVFDRIR 300
+ L + F ++F H KE + + + EEVDNS + +QRTSVFDRI+
Sbjct: 423 ITLAEFFPRSFLEDHPKEILEVTACHTTSIVEFDNNYDSYEEVDNSNEIKQRTSVFDRIK 482
Query: 301 PPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSG 302
P TTR SVFQR+S+ EEENQC ST TR SAF+ LS+STSKK RPSTS FDRLK+ +
Sbjct: 483 PLTTRSSVFQRLSITTKEEENQCPTSTCTRTSAFKSLSISTSKKDRPSTSAFDRLKMIND 542
BLAST of Lag0031823 vs. ExPASy TrEMBL
Match:
A0A5A7VFA5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00130 PE=4 SV=1)
HSP 1 Score: 248.1 bits (632), Expect = 8.5e-62
Identity = 163/316 (51.58%), Postives = 204/316 (64.56%), Query Frame = 0
Query: 1 MVVNTTLPKSSSKEKQQTNGTHH-------LTLKERQKKIYPFADADIPDMLEQLLEAQL 60
MVV T KS SK K+ + +H TL+ERQKK+YPF D+D+ DMLEQL+E QL
Sbjct: 111 MVVQETPLKSFSKRKETKHERNHDDDEKRRPTLRERQKKVYPFPDSDVTDMLEQLIEKQL 170
Query: 61 IEIPTCKRPEEMEKVDDLKYCKYHRVIGHPVERCFILKDLILKLAKEGKIELDLDEVAQS 120
I++ CKRP + KVDD YCKYHRVI HPVE+CF+LK+LILKLA+E KI+LD+DE
Sbjct: 171 IQLLGCKRPGQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLARENKIQLDIDE---- 230
Query: 121 NLATIKGKSKHQRKKDPKKLQPKRK--------RSKKFSQPQQLVMLNKSFSKTFHKKEK 180
IKG KD LQP+R RS P++++ + + + E
Sbjct: 231 ---PIKG-------KDEDFLQPRRSITLAEFLPRSFFEDHPEEVIEVTACHTTSI--VEV 290
Query: 181 ENLATSYCIDVEEVDNSKKSEQRTSVFDRIRPPTTRPSVFQRMSMAATEEENQCSMSTST 240
+N SY EEVDNS + +QRTSVFDRI+P TTR VFQR+SMA EEENQC ST T
Sbjct: 291 DNNYDSY----EEVDNSNEIKQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYT 350
Query: 241 RPSAFQRLSVSTSKKSRPSTSVFDRLKVTSGQSKRKMDNLEMKLFDEVNNDKKLQSSVSS 300
R SAF+RLS+STSKK RPSTS FDRLK+ + Q +R+M +L+ K F E N+D K+ S + S
Sbjct: 351 RTSAFKRLSISTSKKHRPSTSAFDRLKMKNDQQQREMKSLKAKPFHEENDDDKIHSHIPS 403
Query: 301 RMKRTFSVLINTEGSL 302
R SV IN EGSL
Sbjct: 411 ---RKLSVDINIEGSL 403
BLAST of Lag0031823 vs. ExPASy TrEMBL
Match:
A0A5A7SRE2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold452G00210 PE=4 SV=1)
HSP 1 Score: 247.7 bits (631), Expect = 1.1e-61
Identity = 165/342 (48.25%), Postives = 216/342 (63.16%), Query Frame = 0
Query: 1 MVVNTTLPKSSSKEKQQTNGTHH-------LTLKERQKKIYPFADADIPDMLEQLLEAQL 60
M+V T KS SK K+ + +H TL+ERQKK+YPF D+D+ DMLEQL+E QL
Sbjct: 372 MLVQETPLKSFSKRKETKHKRNHDGDEKRRPTLRERQKKVYPFPDSDVADMLEQLIEKQL 431
Query: 61 IEIPTCKRPEEMEKVDDLKYCKYHRVIGHPVERCFILKDLILKLAKEGKIELDLDEVAQS 120
I++P CKRPE++ KVDD YCKYHRVI H VE+CF+LK+LI KLA+E KIELD+DEVAQ+
Sbjct: 432 IQLPECKRPEQVGKVDDPNYCKYHRVISHLVEKCFVLKELIRKLARENKIELDIDEVAQT 491
Query: 121 NLATIKGKSK--------HQRKK-------DPKKLQPKRKRSKKFSQPQQ---------- 180
N + S QRK +P ++ ++K SQ ++
Sbjct: 492 NHVAVNMTSSVPLSILLYDQRKSLIQFGTFEPILVRFQQKTMTSNSQNKEEPSEDEGEEW 551
Query: 181 LVMLNKSFSKTFHKKEKENLA--TSYCIDV-------EEVDNSKKSEQRTSVFDRIRPPT 240
+ L +SF + ++ E A T+ ++V EE+DNS + +QRTSVFD I+P T
Sbjct: 552 IEFLPRSFLEDHPEEILEVTACHTTSIVEVDNNYDSYEEMDNSNEIKQRTSVFDCIKPLT 611
Query: 241 TRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSGQSK 300
TR SVFQR+SMA +EENQC T + SAF+RLS+S SKK RPST FDRLK+T+ Q +
Sbjct: 612 TRSSVFQRLSMATKKEENQCPTFTYAQTSAFKRLSISISKKHRPSTYTFDRLKMTNDQQQ 671
Query: 301 RKMDNLEMKLFDEVNNDKKLQSSVSSRMKRTFSVLINTEGSL 302
R+M L+ K F E N+D K+ S V SRMKR SV INTEGSL
Sbjct: 672 REMKTLKAKPFQEENDDDKIHSRVPSRMKRKLSVDINTEGSL 713
BLAST of Lag0031823 vs. ExPASy TrEMBL
Match:
A0A5D3D209 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003310 PE=4 SV=1)
HSP 1 Score: 246.5 bits (628), Expect = 2.5e-61
Identity = 170/405 (41.98%), Postives = 218/405 (53.83%), Query Frame = 0
Query: 1 MVVNTTLPKSSSKEKQQTNGTHH-------LTLKERQKKIYPFADADIPDMLEQLLEAQL 60
M V T KS SK K+ + +H TL+ERQKK+YPF ++D+ DMLEQL+E QL
Sbjct: 111 MFVQETPLKSFSKRKETKHKRNHDGDEKQRPTLRERQKKVYPFPNSDVADMLEQLIEKQL 170
Query: 61 IEIPTCKRPEEMEKVDDLKYCKYHRVIGHPVERCFILKDLILKLAKEGKIELDLDEVAQS 120
I++P CKR E++ KVDD YCKY+RVI HPVE+CF+LK+LILKLA+E KIELD+DEVAQ+
Sbjct: 171 IQLPECKRLEQVGKVDDSNYCKYYRVISHPVEKCFVLKELILKLARENKIELDIDEVAQT 230
Query: 121 N----------------------------------------------------------- 180
N
Sbjct: 231 NHVAVNMTSNVPPSILLYDQRESLIQFGTFEPIHVQFQQKTMTSNSQNKEEPSEDEGEEW 290
Query: 181 -------------------------LATIKGKSKHQRKKDPKKLQPKRKRSKKFSQPQQL 240
I K K +R K K +P + + + F QP++
Sbjct: 291 IGVAHKKERQTSFVQTNSHFHQKNSKGNISHKKKGRRNKKMWKPKPIKGKDEHFLQPRRS 350
Query: 241 VMLNKSFSKTFHKKEKENLA------TSYCIDV-------EEVDNSKKSEQRTSVFDRIR 300
+ L + + F + E + T+ ++V EEVDNS + +QRTSVFDRI+
Sbjct: 351 ITLAEFLPRIFLEDHPEEILEVTACHTTNIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIK 410
Query: 301 PPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSG 302
P TTR VFQR+SMA EEENQC ST R SAF+RLS+STSKK RPSTS FDRLK+T+
Sbjct: 411 PLTTRSLVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNN 470
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0056121.1 | 2.5e-63 | 52.22 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0040811.1 | 9.4e-63 | 42.22 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| KAA0065984.1 | 1.8e-61 | 51.58 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28929.1 ty3-gyp... | [more] |
| KAA0032121.1 | 2.3e-61 | 48.25 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| TYK16519.1 | 5.1e-61 | 41.98 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7URH1 | 1.2e-63 | 52.22 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5A7TGM1 | 4.5e-63 | 42.22 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
| A0A5A7VFA5 | 8.5e-62 | 51.58 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5A7SRE2 | 1.1e-61 | 48.25 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5D3D209 | 2.5e-61 | 41.98 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
