Lag0031682 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0031682
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibonuclease H
Locationchr11: 11866005 .. 11866409 (+)
RNA-Seq ExpressionLag0031682
SyntenyLag0031682
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGCCGAGGTGTCCCAGAAGTTCAAGGTACCCACATTCAAACCATATGATGGCAAGAAGGACCCCATACAACACATAGACGCTTACAGGAACCGGATGGACTTCCATGGCGTTTCAGATGCAATTAGATGTCACGCTTTCTCTTTCACTCTGACACGATCAGCCAAGCAATGGTTTCAGAGGTTGAAGATGATATCCATTAGCTCTTTCAAAGAACTAGCCCGAGCATTCATCTCGCAGTTCATGGGAGCCAGAGAACAACGCAAGCCTCACATCAACCTTCTAACTGTCAAACAACAGTTAGATGAGAGTCTGCGTGACTATATAACTCGTTTCAACGAGGAAGCTCTACAGGTTGAGGGATACAGTGAAGAAGCAGCCTTAGTAGCCATAACAGCATGA

mRNA sequence

ATGAAAGCCGAGGTGTCCCAGAAGTTCAAGGTACCCACATTCAAACCATATGATGGCAAGAAGGACCCCATACAACACATAGACGCTTACAGGAACCGGATGGACTTCCATGGCGTTTCAGATGCAATTAGATGTCACGCTTTCTCTTTCACTCTGACACGATCAGCCAAGCAATGGTTTCAGAGGTTGAAGATGATATCCATTAGCTCTTTCAAAGAACTAGCCCGAGCATTCATCTCGCAGTTCATGGGAGCCAGAGAACAACGCAAGCCTCACATCAACCTTCTAACTGTCAAACAACAGTTAGATGAGAGTCTGCGTGACTATATAACTCGTTTCAACGAGGAAGCTCTACAGGTTGAGGGATACAGTGAAGAAGCAGCCTTAGTAGCCATAACAGCATGA

Coding sequence (CDS)

ATGAAAGCCGAGGTGTCCCAGAAGTTCAAGGTACCCACATTCAAACCATATGATGGCAAGAAGGACCCCATACAACACATAGACGCTTACAGGAACCGGATGGACTTCCATGGCGTTTCAGATGCAATTAGATGTCACGCTTTCTCTTTCACTCTGACACGATCAGCCAAGCAATGGTTTCAGAGGTTGAAGATGATATCCATTAGCTCTTTCAAAGAACTAGCCCGAGCATTCATCTCGCAGTTCATGGGAGCCAGAGAACAACGCAAGCCTCACATCAACCTTCTAACTGTCAAACAACAGTTAGATGAGAGTCTGCGTGACTATATAACTCGTTTCAACGAGGAAGCTCTACAGGTTGAGGGATACAGTGAAGAAGCAGCCTTAGTAGCCATAACAGCATGA

Protein sequence

MKAEVSQKFKVPTFKPYDGKKDPIQHIDAYRNRMDFHGVSDAIRCHAFSFTLTRSAKQWFQRLKMISISSFKELARAFISQFMGAREQRKPHINLLTVKQQLDESLRDYITRFNEEALQVEGYSEEAALVAITA
Homology
BLAST of Lag0031682 vs. NCBI nr
Match: XP_022159109.1 (uncharacterized protein LOC111025548 [Momordica charantia])

HSP 1 Score: 151.4 bits (381), Expect = 5.7e-33
Identity = 74/131 (56.49%), Postives = 98/131 (74.81%), Query Frame = 0

Query: 1   MKAEVSQKFKVPTFKPYDGKKDPIQHIDAYRNRMDFHGVSDAIRCHAFSFTLTRSAKQWF 60
           M+ +V  KFK+PT KP+DG  +P+ H+DAYR  MD +GVSDAIRC  FS TL  SA+ WF
Sbjct: 90  MREKVPPKFKLPTVKPFDGMTEPVDHLDAYREWMDIYGVSDAIRCRVFSTTLNGSARIWF 149

Query: 61  QRLKMISISSFKELARAFISQFMGAREQRKPHINLLTVKQQLDESLRDYITRFNEEALQV 120
           ++LK  SISSFK LARAF++QF+G R + +P   LLT+KQ+  ESL DY+ RFNEE LQ+
Sbjct: 150 RQLKRGSISSFKSLARAFMTQFVGGRCRSRPVAYLLTIKQRTAESLHDYVARFNEEKLQL 209

Query: 121 EGYSEEAALVA 132
           EG ++  +L+A
Sbjct: 210 EGLTDAVSLLA 220

BLAST of Lag0031682 vs. NCBI nr
Match: XP_022158344.1 (uncharacterized protein LOC111024851 [Momordica charantia])

HSP 1 Score: 151.0 bits (380), Expect = 7.4e-33
Identity = 73/134 (54.48%), Postives = 95/134 (70.90%), Query Frame = 0

Query: 1   MKAEVSQKFKVPTFKPYDGKKDPIQHIDAYRNRMDFHGVSDAIRCHAFSFTLTRSAKQWF 60
           MK +   KFK+P    YDG  DPI H+DAYR   D + + +AIRC  FSFTLT SA+ WF
Sbjct: 1   MKEKARPKFKLPAIAEYDGSADPIDHLDAYREWADIYDIREAIRCRVFSFTLTGSARNWF 60

Query: 61  QRLKMISISSFKELARAFISQFMGAREQRKPHINLLTVKQQLDESLRDYITRFNEEALQV 120
           ++LK  SISSFKELA AF++QF+G R + KP   LLT+KQ+  ESL++Y+ RFNEE LQV
Sbjct: 61  RQLKRNSISSFKELAEAFVTQFVGGRVKSKPVTYLLTIKQKATESLKEYVARFNEEKLQV 120

Query: 121 EGYSEEAALVAITA 135
           EG ++  AL+A  +
Sbjct: 121 EGLTDAVALIAFVS 134

BLAST of Lag0031682 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 149.4 bits (376), Expect = 2.1e-32
Identity = 73/131 (55.73%), Postives = 97/131 (74.05%), Query Frame = 0

Query: 1   MKAEVSQKFKVPTFKPYDGKKDPIQHIDAYRNRMDFHGVSDAIRCHAFSFTLTRSAKQWF 60
           M+ +V  KFK+PT K +D   DP+ H+DAYR  MD +GVS+A+RC  FS TL  SA+ WF
Sbjct: 185 MREKVPPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWF 244

Query: 61  QRLKMISISSFKELARAFISQFMGAREQRKPHINLLTVKQQLDESLRDYITRFNEEALQV 120
           ++LK  SISSFK LARAF++QF+G R + +P   LLT+KQ+  ESLRDY+ RFNEE LQV
Sbjct: 245 RQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQV 304

Query: 121 EGYSEEAALVA 132
           EG ++  +L+A
Sbjct: 305 EGLTDAVSLLA 315

BLAST of Lag0031682 vs. NCBI nr
Match: XP_022147761.1 (uncharacterized protein LOC111016619 [Momordica charantia])

HSP 1 Score: 147.5 bits (371), Expect = 8.2e-32
Identity = 71/130 (54.62%), Postives = 92/130 (70.77%), Query Frame = 0

Query: 1   MKAEVSQKFKVPTFKPYDGKKDPIQHIDAYRNRMDFHGVSDAIRCHAFSFTLTRSAKQWF 60
           MK +V  KFK+P  K YDG  DPI H+D Y    D +G+++AIRC  FSFTLT S + WF
Sbjct: 1   MKEKVPPKFKLPAIKKYDGSTDPIDHLDVYHEWTDIYGITEAIRCRVFSFTLTGSTRIWF 60

Query: 61  QRLKMISISSFKELARAFISQFMGAREQRKPHINLLTVKQQLDESLRDYITRFNEEALQV 120
           Q+LK  SISSFKELARAF++QF G   + +P   LLT+KQ+  ESL+DY+ RFN+E LQV
Sbjct: 61  QQLKRKSISSFKELARAFVTQFAGGWNRSRPVAYLLTIKQKATESLKDYVARFNKEKLQV 120

Query: 121 EGYSEEAALV 131
           EG ++   L+
Sbjct: 121 EGLTDAVVLL 130

BLAST of Lag0031682 vs. NCBI nr
Match: XP_022150035.1 (uncharacterized protein LOC111018307 [Momordica charantia])

HSP 1 Score: 146.7 bits (369), Expect = 1.4e-31
Identity = 71/131 (54.20%), Postives = 96/131 (73.28%), Query Frame = 0

Query: 1   MKAEVSQKFKVPTFKPYDGKKDPIQHIDAYRNRMDFHGVSDAIRCHAFSFTLTRSAKQWF 60
           MK +V  KFK+PT K +DG  D + H+DAYR  MD +GVS+A++C  FS TL+ SA+ WF
Sbjct: 5   MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWF 64

Query: 61  QRLKMISISSFKELARAFISQFMGAREQRKPHINLLTVKQQLDESLRDYITRFNEEALQV 120
           ++LK  SISSFK LA+AF++QF+G R + +P   LLT+KQ+  ESL DY+ RFNEE LQV
Sbjct: 65  RQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQRATESLHDYVARFNEEKLQV 124

Query: 121 EGYSEEAALVA 132
           EG +   +L+A
Sbjct: 125 EGLTNAVSLMA 135

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022159109.15.7e-3356.49uncharacterized protein LOC111025548 [Momordica charantia][more]
XP_022158344.17.4e-3354.48uncharacterized protein LOC111024851 [Momordica charantia][more]
XP_022158830.12.1e-3255.73uncharacterized protein LOC111025293 [Momordica charantia][more]
XP_022147761.18.2e-3254.62uncharacterized protein LOC111016619 [Momordica charantia][more]
XP_022150035.11.4e-3154.20uncharacterized protein LOC111018307 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 47..132
e-value: 2.7E-12
score: 46.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0031682.1Lag0031682.1mRNA