Lag0031656 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0031656
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Plant transposase
Location	chr11: 11483802 .. 11484941 (+)
RNA-Seq Expression	Lag0031656
Synteny	Lag0031656

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATATTTTTCGTCTACTAGTTTCTCCTTTGTCAATAATTAGTTTTCTTATGTTTTGACTAAATTAATTTCATTAACTTAATTCTTACGGTATGTTTGAAAGAAAAAGAACTAATAAAAACTTTCGGTGGATATTTCTTTTTTGTACAAGAACCTTTTTTTTCCATCTTCTACTTAATAATATATCACTTTCATGTTATTTTCTTAAGATAAAACCTAATCACTATTACCATTCACTGATTGCTTACACTCTGAATTCATCTGTTCACGTTTAAGTCCTTTCATACTGACTGTGAACTTGGTTGGCTGTTTCTAAATTGATGATGATCTTGTTTCTATAGGTTTTGGGTTATGACCCCCTCCCTCCGATTATGGTCTTGAAAGCTGTGCACAGTTTTGTTTTAATTGTGGTATTATATTCAATATATATGAAATGTAATATTGATTATAGGATTACATATTTGCTTTCTTTCTAGTATGAGTTTTGGTCTACGACCCCTCCCCCATTTAGGATTAAAAAATTAATATTGTTTGATATTTTCTTTATTTATTGGTAAAAGAGTGTTAGAATCAATACTCCCCACAAGTGCATGTTGTTAGATTGGATGGGTTCACGAGAAGTAATTGTCGAAGGGAGATGGTCTTCTAATGATCCATCAGTACTTGTCCATCACATCCCTCTTGGTCCAAATGCAGTACGTGTATGGGTTGATACGGTAAGAAAATCCAATTCTTTTCTATGGAGGCCTACTTCTGACATGGTGCATATTGATGATGCTTTGGGTACTACAATTGCATGGCCAGTTGATAAAGTTCAAATATGTAAGCAAACTTACTTTCAAGTTCAATGGAATTAGTTTATATGAATTATAATATTTATTTGGTTTATTAATTGATATATTATTAGGGTTAAATCATGATTATTTATCAAAGATATTTTGTTTTGGTTTATTATCAGGAGAATGATGAAATGATGATACACATCAGCTGCATATTTATGGGAGAATGTTAGTCTCACAATCTTTTGAACCTCTGTCACTTGTTTTTGTATGAACTTTTTGGGATTATATGTGTATTCATTTTACCTTGGATGTGTTATGAATTTGCAGCTCTTCACATGTATGTACTTAGTAATTAG

mRNA sequence

ATGGTTTTGGGTTATGACCCCCTCCCTCCGATTATGGTCTTGAAAGCTGTGCACAGTTTTGTTTTAATTGTGAGTGTTAGAATCAATACTCCCCACAAGTGCATGTTGTTAGATTGGATGGGTTCACGAGAAGTAATTGTCGAAGGGAGATGGTCTTCTAATGATCCATCAGTACTTGTCCATCACATCCCTCTTGGTCCAAATGCAGTACGTGTATGGGTTGATACGGTAAGAAAATCCAATTCTTTTCTATGGAGGCCTACTTCTGACATGGTGCATATTGATGATGCTTTGGGTACTACAATTGCATGGCCAGTTGATAAAGTTCAAATATCTCTTCACATGTATGTACTTAGTAATTAG

Coding sequence (CDS)

ATGGTTTTGGGTTATGACCCCCTCCCTCCGATTATGGTCTTGAAAGCTGTGCACAGTTTTGTTTTAATTGTGAGTGTTAGAATCAATACTCCCCACAAGTGCATGTTGTTAGATTGGATGGGTTCACGAGAAGTAATTGTCGAAGGGAGATGGTCTTCTAATGATCCATCAGTACTTGTCCATCACATCCCTCTTGGTCCAAATGCAGTACGTGTATGGGTTGATACGGTAAGAAAATCCAATTCTTTTCTATGGAGGCCTACTTCTGACATGGTGCATATTGATGATGCTTTGGGTACTACAATTGCATGGCCAGTTGATAAAGTTCAAATATCTCTTCACATGTATGTACTTAGTAATTAG

Protein sequence

MVLGYDPLPPIMVLKAVHSFVLIVSVRINTPHKCMLLDWMGSREVIVEGRWSSNDPSVLVHHIPLGPNAVRVWVDTVRKSNSFLWRPTSDMVHIDDALGTTIAWPVDKVQISLHMYVLSN

Homology

[Close]

BLAST of Lag0031656 vs. NCBI nr
Match: KAA0032201.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 164.1 bits (414), Expect = 7.5e-37
Identity = 70/87 (80.46%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 25  SVRINTPHKCMLLDWMGSREVIVEGRWSSNDPSVLVHHIPLGPNAVRVWVDTVRKSNSFL 84
           SV  NTPHKC+LLDW+GS EVI EGRWSSNDPSVLVHH+PLGPNAVRVWVDTV+  NSFL
Sbjct: 425 SVTTNTPHKCLLLDWIGSGEVIAEGRWSSNDPSVLVHHVPLGPNAVRVWVDTVKIPNSFL 484

Query: 85  WRPTSDMVHIDDALGTTIAWPVDKVQI 112
           WRPTSD++ IDDALGTT+AWP+DKV++
Sbjct: 485 WRPTSDIIVIDDALGTTVAWPMDKVKL 511

[Close]

BLAST of Lag0031656 vs. NCBI nr
Match: KAA0057491.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 164.1 bits (414), Expect = 7.5e-37
Identity = 70/87 (80.46%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 25  SVRINTPHKCMLLDWMGSREVIVEGRWSSNDPSVLVHHIPLGPNAVRVWVDTVRKSNSFL 84
           SV  NTPHKC+LLDW+GS EVI EGRWSSNDPSVLVHH+PLGPNAVRVWVDTV+  NSFL
Sbjct: 425 SVTTNTPHKCLLLDWIGSGEVIAEGRWSSNDPSVLVHHVPLGPNAVRVWVDTVKIPNSFL 484

Query: 85  WRPTSDMVHIDDALGTTIAWPVDKVQI 112
           WRPTSD++ IDDALGTT+AWP+DKV++
Sbjct: 485 WRPTSDIIVIDDALGTTVAWPMDKVKL 511

[Close]

BLAST of Lag0031656 vs. NCBI nr
Match: KAA0042856.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 164.1 bits (414), Expect = 7.5e-37
Identity = 70/87 (80.46%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 25  SVRINTPHKCMLLDWMGSREVIVEGRWSSNDPSVLVHHIPLGPNAVRVWVDTVRKSNSFL 84
           SV  NTPHKC+LLDW+GS EVI EGRWSSNDPSVLVHH+PLGPNAVRVWVDTV+  NSFL
Sbjct: 425 SVTTNTPHKCLLLDWIGSGEVIAEGRWSSNDPSVLVHHVPLGPNAVRVWVDTVKIPNSFL 484

Query: 85  WRPTSDMVHIDDALGTTIAWPVDKVQI 112
           WRPTSD++ IDDALGTT+AWP+DKV++
Sbjct: 485 WRPTSDIIVIDDALGTTVAWPMDKVKL 511

[Close]

BLAST of Lag0031656 vs. NCBI nr
Match: KAA0051001.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 161.8 bits (408), Expect = 3.7e-36
Identity = 69/87 (79.31%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 25  SVRINTPHKCMLLDWMGSREVIVEGRWSSNDPSVLVHHIPLGPNAVRVWVDTVRKSNSFL 84
           SV  NTPHKC+LLDW+GS EVI EGRWSSNDPSVLVHH+PLGPNAVRVWVDTV+  NSFL
Sbjct: 391 SVTTNTPHKCLLLDWIGSGEVIAEGRWSSNDPSVLVHHVPLGPNAVRVWVDTVKIPNSFL 450

Query: 85  WRPTSDMVHIDDALGTTIAWPVDKVQI 112
           WRPT D++ IDDALGTT+AWP+DKV++
Sbjct: 451 WRPTFDIIVIDDALGTTVAWPMDKVKL 477

[Close]

BLAST of Lag0031656 vs. NCBI nr
Match: XP_022154306.1 (uncharacterized protein LOC111021601 isoform X2 [Momordica charantia])

HSP 1 Score: 158.7 bits (400), Expect = 3.2e-35
Identity = 69/88 (78.41%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 24  VSVRINTPHKCMLLDWMGSREVIVEGRWSSNDPSVLVHHIPLGPNAVRVWVDTVRKSNSF 83
           V++  N P KCMLLDW+GS +VI EGRWSSNDPSVLVHHIPLGPN VRVWVDTV+K NS+
Sbjct: 116 VTINDNAPRKCMLLDWIGSGKVIAEGRWSSNDPSVLVHHIPLGPNVVRVWVDTVKKPNSY 175

Query: 84  LWRPTSDMVHIDDALGTTIAWPVDKVQI 112
           LWRPTSDM+ ID+ALGTTIAWP DKV+I
Sbjct: 176 LWRPTSDMMVIDNALGTTIAWPADKVKI 203

The following BLAST results are available for this feature:

BLAST of Lag0031656 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032201.1	7.5e-37	80.46	Plant transposase [Cucumis melo var. makuwa]	[more]
KAA0057491.1	7.5e-37	80.46	Plant transposase [Cucumis melo var. makuwa]	[more]
KAA0042856.1	7.5e-37	80.46	Plant transposase [Cucumis melo var. makuwa]	[more]
KAA0051001.1	3.7e-36	79.31	Plant transposase [Cucumis melo var. makuwa]	[more]
XP_022154306.1	3.2e-35	78.41	uncharacterized protein LOC111021601 isoform X2 [Momordica charantia]	[more]

BLAST of Lag0031656 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004264	Transposase, Tnp1/En/Spm-like	PFAM	PF03017	Transposase_23	coord: 35..98 e-value: 1.2E-6 score: 28.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0031656.1	Lag0031656.1	mRNA