Lag0031566 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0031566
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	outer envelope pore protein 16-2, chloroplastic
Location	chr11: 10119266 .. 10121118 (+)
RNA-Seq Expression	Lag0031566
Synteny	Lag0031566

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAGACTCCTTGATGGTTCATTGGTTGATGAAATCCGATGCTCCCATGTCGGAGATTTCTTGTACGACCTTGGCCATCCTCTGCTCAATCGCGTTGCTGATAGCTTCGTTAAGGCCGCTGGGGTTCGTATTCTTACTTTCTGTTAACTTCTGTGATAATCTTGATGTGATAGTACGTGTTGGATTGAACCTCTATGTGTTAACCTAAGACGTCAATGGTTCGTTGTACAGATAGGAGCATTGCAATCTGCGTCTCGAGAGGCGTATTTTACGGTTGCCGGAAGTAAGATGTGCTTTCATTTAGTATTTCAATCCGATCCTTGCTTTGATTTCTTTCGACTTTCATCTCACATTTCATCTCTCTGTTTTGATCTCGTTTAAGTTTCGTGTATTATGTACTTTTGCTTTATTTTACGCGTTTAGGAGACGGTTTGATGTTAAATTTGTTAACGAAAATTTGTAATGCTTGGAAGAATTTCATTATCGGTACAGGTCTTGACTCGCACAGTGGAGCACCGCCTGAATTATCGAGTGCTAGAAAGCAACGATTTCCAGGTCTTAAAGGTATACTCGATTCTTCTTCTGAATTGAACTCTGTTTATGCACAAGCAAATTCGTTCTTCAGTCCGCGAGGTAGGTTTGATTTTGTTTTTCTTGCCTGGTGAAAGCGTGAACTATGTCGCCGTAGATTGAGTTCAAATAATTATATTGTTTCAGATTGATACCGCCTCATTATTTTGGTCTTTGTATAAGATATGGATAGCCAGATTATTCTTTGATATGGACAAAAACTGGAGTGTCCCTTTCGATTCTGTATAATTTGTGTAAAGTCCAAGTCAGTGTTGTCCTTTGAGATGCTTGAATCTCATTTCTACATATGCCGTGCAGGTGAAACCAACAAGGAGTCTCTTGAAGCCATGGTGAGTGTTTGTAAACGGGTGATGAAGTGTTGAGTTTGTGATGAATTATTTGCAGTAGTACTGGTCAATAAACATGTAATAATTTTTCATTTTATTGTGTTTGTCAGGTGAAGAGCGTGGGAAAAGAATCTATGCAATGGGGTCAGTATCCCTTCTCTGAATTTTCGAATACCGAACATTAATGAATGTACAAGTATACTATTATAGCTTCGATGCCTTTCTTGCACATCTAGTTTATGCGTTAAACCCACCAATTCGATGGATCATTTGGTTTGAGTGCTGATTTTTGCTTTCATTTCAAGTGCATTGTCACTAGCCCAAAGTATTTGGTTCCTTTCAAAATTCTCCAGCTAACTTTTACAAGATTCTTCTGTTGAAGGAGGCAAATAAATTTTCTATAATCTTATAATATTTCACCTCGGAAGATTATTTCCTCTATTTCATCTTATTTTGGAAAATAAATAGCCAATCTTTTGGTTGAGTGGTGTGATTTAATAAGCATATTTTGTGGTGTTTGATTTTATTTCATTACTCAGCTAATTTTGTTGATTCTTATCGGCTGTAGGATTAGCTGCTGGTGTTTATTCTGGACTTACATACGGTTTAAAGGAGGCTCGTGGAGCACATGACTGGGTAACCCCTCCACAATTAACCAACAAATGTTTAATGTTTTGATCAAAGTATAGTATGATTTTAGGACGATTTTTCATAGGGAGAAAGGAAGTTAGGCATTTAGTTCTTCTGGGCATGAAGTCTTAATCCACAGTCGTGTTAATTCCATTGCAGAAGAATAGTGCGATCGCAGGTGCAGTGACGGGCGTAGCTGTGGCACTGACATCAGACGAGTCCTCTCACGAGCATATCGTACAATACGCCATCACTGGCGCTGCTGTGTCGACGGCTGCAAATATTTTTGCTGGCATATTTTAG

mRNA sequence

ATGGGCAGACTCCTTGATGGTTCATTGGTTGATGAAATCCGATGCTCCCATGTCGGAGATTTCTTGTACGACCTTGGCCATCCTCTGCTCAATCGCGTTGCTGATAGCTTCGTTAAGGCCGCTGGGATAGGAGCATTGCAATCTGCGTCTCGAGAGGCGTATTTTACGGTTGCCGGAAGTCTTGACTCGCACAGTGGAGCACCGCCTGAATTATCGAGTGCTAGAAAGCAACGATTTCCAGGTCTTAAAGGTGAAACCAACAAGGAGTCTCTTGAAGCCATGGTGAAGAGCGTGGGAAAAGAATCTATGCAATGGGGATTAGCTGCTGGTGTTTATTCTGGACTTACATACGGTTTAAAGGAGGCTCGTGGAGCACATGACTGGAAGAATAGTGCGATCGCAGGTGCAGTGACGGGCGTAGCTGTGGCACTGACATCAGACGAGTCCTCTCACGAGCATATCGTACAATACGCCATCACTGGCGCTGCTGTGTCGACGGCTGCAAATATTTTTGCTGGCATATTTTAG

Coding sequence (CDS)

ATGGGCAGACTCCTTGATGGTTCATTGGTTGATGAAATCCGATGCTCCCATGTCGGAGATTTCTTGTACGACCTTGGCCATCCTCTGCTCAATCGCGTTGCTGATAGCTTCGTTAAGGCCGCTGGGATAGGAGCATTGCAATCTGCGTCTCGAGAGGCGTATTTTACGGTTGCCGGAAGTCTTGACTCGCACAGTGGAGCACCGCCTGAATTATCGAGTGCTAGAAAGCAACGATTTCCAGGTCTTAAAGGTGAAACCAACAAGGAGTCTCTTGAAGCCATGGTGAAGAGCGTGGGAAAAGAATCTATGCAATGGGGATTAGCTGCTGGTGTTTATTCTGGACTTACATACGGTTTAAAGGAGGCTCGTGGAGCACATGACTGGAAGAATAGTGCGATCGCAGGTGCAGTGACGGGCGTAGCTGTGGCACTGACATCAGACGAGTCCTCTCACGAGCATATCGTACAATACGCCATCACTGGCGCTGCTGTGTCGACGGCTGCAAATATTTTTGCTGGCATATTTTAG

Protein sequence

MGRLLDGSLVDEIRCSHVGDFLYDLGHPLLNRVADSFVKAAGIGALQSASREAYFTVAGSLDSHSGAPPELSSARKQRFPGLKGETNKESLEAMVKSVGKESMQWGLAAGVYSGLTYGLKEARGAHDWKNSAIAGAVTGVAVALTSDESSHEHIVQYAITGAAVSTAANIFAGIF

Homology

[Close]

BLAST of Lag0031566 vs. NCBI nr
Match: XP_038875334.1 (outer envelope pore protein 16-2, chloroplastic [Benincasa hispida])

HSP 1 Score: 308.5 bits (789), Expect = 3.6e-80
Identity = 161/176 (91.48%), Postives = 167/176 (94.89%), Query Frame = 0


Query: 1   MGRLLDG-SLVDEIRCSHVGDFLYDLGHPLLNRVADSFVKAAGIGALQSASREAYFTVAG 60
           MGR L+  SLVDEIRCSH G FLYDLGHPLLNRVADSFVKAAGIGALQS SREAYFTVAG
Sbjct: 1   MGRSLENLSLVDEIRCSHGGSFLYDLGHPLLNRVADSFVKAAGIGALQSVSREAYFTVAG 60

Query: 61  SLDSHSGAPPELSSARKQRFPGLKGETNKESLEAMVKSVGKESMQWGLAAGVYSGLTYGL 120
           S+DS+S  PPEL+S RKQRFPGLKGETNKESLEAMVKSVGKES+QWGLAAGVYSGLTYGL
Sbjct: 61  SVDSNSVPPPELASIRKQRFPGLKGETNKESLEAMVKSVGKESIQWGLAAGVYSGLTYGL 120

Query: 121 KEARGAHDWKNSAIAGAVTGVAVALTSDESSHEHIVQYAITGAAVSTAANIFAGIF 176
           KEARGAHDWKNSAIAGA+TGVAVALTSDESSHEHIVQYAITGAAVSTAANIFAGIF
Sbjct: 121 KEARGAHDWKNSAIAGAMTGVAVALTSDESSHEHIVQYAITGAAVSTAANIFAGIF 176

[Close]

BLAST of Lag0031566 vs. NCBI nr
Match: XP_008458360.1 (PREDICTED: outer envelope pore protein 16-2, chloroplastic [Cucumis melo])

HSP 1 Score: 305.1 bits (780), Expect = 4.0e-79
Identity = 157/168 (93.45%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 8   SLVDEIRCSHVGDFLYDLGHPLLNRVADSFVKAAGIGALQSASREAYFTVAGSLDSHSGA 67
           SLVDEIRC+H G FLYDLGHPLLNRVADSFVKAAGIGALQS SREAYFTVAGS+DS+S  
Sbjct: 10  SLVDEIRCTHSGPFLYDLGHPLLNRVADSFVKAAGIGALQSVSREAYFTVAGSVDSNSVP 69

Query: 68  PPELSSARKQRFPGLKGETNKESLEAMVKSVGKESMQWGLAAGVYSGLTYGLKEARGAHD 127
           PPELSS RKQRFPGLKGETNKESLEAMVKSVGKES+QWGLAAGVYSGLTYGLKEARGAHD
Sbjct: 70  PPELSSIRKQRFPGLKGETNKESLEAMVKSVGKESIQWGLAAGVYSGLTYGLKEARGAHD 129

Query: 128 WKNSAIAGAVTGVAVALTSDESSHEHIVQYAITGAAVSTAANIFAGIF 176
           WKNSAIAGAVTGVAVALTSDESSHEHIVQYAITGAA+STAANIFAGIF
Sbjct: 130 WKNSAIAGAVTGVAVALTSDESSHEHIVQYAITGAAMSTAANIFAGIF 177

[Close]

BLAST of Lag0031566 vs. NCBI nr
Match: XP_011657265.1 (outer envelope pore protein 16-2, chloroplastic [Cucumis sativus] >KAE8647078.1 hypothetical protein Csa_022916 [Cucumis sativus])

HSP 1 Score: 301.2 bits (770), Expect = 5.8e-78
Identity = 154/168 (91.67%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 8   SLVDEIRCSHVGDFLYDLGHPLLNRVADSFVKAAGIGALQSASREAYFTVAGSLDSHSGA 67
           S+VDEIRCSH G FLYDLGHPLLNRVADSFVKAAGIGALQS SREAYFTVAGS+DS+   
Sbjct: 10  SMVDEIRCSHGGTFLYDLGHPLLNRVADSFVKAAGIGALQSVSREAYFTVAGSVDSNIAP 69

Query: 68  PPELSSARKQRFPGLKGETNKESLEAMVKSVGKESMQWGLAAGVYSGLTYGLKEARGAHD 127
           PPELSS RKQRFPGLKGETNKESLEAMVKSVGKES+QWGLAAGVYSGLTYGLKEARGAHD
Sbjct: 70  PPELSSMRKQRFPGLKGETNKESLEAMVKSVGKESIQWGLAAGVYSGLTYGLKEARGAHD 129

Query: 128 WKNSAIAGAVTGVAVALTSDESSHEHIVQYAITGAAVSTAANIFAGIF 176
           WKNSAIAGAVTGVAVALT+D+SSHEHIVQYAITGAA+STAANIFAGIF
Sbjct: 130 WKNSAIAGAVTGVAVALTADKSSHEHIVQYAITGAAMSTAANIFAGIF 177

[Close]

BLAST of Lag0031566 vs. NCBI nr
Match: TYK02947.1 (outer envelope pore protein 16-2 [Cucumis melo var. makuwa])

HSP 1 Score: 292.0 bits (746), Expect = 3.5e-75
Identity = 157/191 (82.20%), Postives = 162/191 (84.82%), Query Frame = 0


Query: 8   SLVDEIRCSHVGDFLYDLGHPLLNRVADSFVKAAGIGALQSASREAYFTVAGSLDSHSGA 67
           SLVDEIRC+H G FLYDLGHPLLNRVADSFVKAAGIGALQS SREAYFTVAGS+DS+S  
Sbjct: 10  SLVDEIRCTHSGPFLYDLGHPLLNRVADSFVKAAGIGALQSVSREAYFTVAGSVDSNSVP 69

Query: 68  PPELSSARKQRFPGLKGETNKESLEAMVKSVGKESMQWG--------------------- 127
           PPELSS RKQRFPGLKGETNKESLEAMVKSVGKES+QWG                     
Sbjct: 70  PPELSSIRKQRFPGLKGETNKESLEAMVKSVGKESIQWGRYTGHLVECDLLLSCPMLFAN 129

Query: 128 --LAAGVYSGLTYGLKEARGAHDWKNSAIAGAVTGVAVALTSDESSHEHIVQYAITGAAV 176
             LAAGVYSGLTYGLKEARGAHDWKNSAIAGAVTGVAVALTSDESSHEHIVQYAITGAA+
Sbjct: 130 GRLAAGVYSGLTYGLKEARGAHDWKNSAIAGAVTGVAVALTSDESSHEHIVQYAITGAAM 189

[Close]

BLAST of Lag0031566 vs. NCBI nr
Match: XP_023514075.1 (outer envelope pore protein 16-2, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285.0 bits (728), Expect = 4.3e-73
Identity = 147/168 (87.50%), Postives = 155/168 (92.26%), Query Frame = 0


Query: 8   SLVDEIRCSHVGDFLYDLGHPLLNRVADSFVKAAGIGALQSASREAYFTVAGSLDSHSGA 67
           S+VDEI+CS  G FLYD GHPLLNRVADSF+KAAGIGALQS SREAYFTVAGSLDS +G 
Sbjct: 10  SVVDEIKCSQGGTFLYDFGHPLLNRVADSFIKAAGIGALQSVSREAYFTVAGSLDSDNGP 69

Query: 68  PPELSSARKQRFPGLKGETNKESLEAMVKSVGKESMQWGLAAGVYSGLTYGLKEARGAHD 127
           PPELSSARK+  PGLKGETNKESLEAMVKSVG+ES+QWGLAAGVYSGLTYGLKEARGAHD
Sbjct: 70  PPELSSARKRHVPGLKGETNKESLEAMVKSVGQESIQWGLAAGVYSGLTYGLKEARGAHD 129

Query: 128 WKNSAIAGAVTGVAVALTSDESSHEHIVQYAITGAAVSTAANIFAGIF 176
           WKNSAIAGAVTGVAVAL SD+SSHE IVQ AITGAAVS AANIFAGIF
Sbjct: 130 WKNSAIAGAVTGVAVALASDDSSHERIVQSAITGAAVSAAANIFAGIF 177

[Close]

BLAST of Lag0031566 vs. ExPASy Swiss-Prot
Match: Q0WMZ5 (Outer envelope pore protein 16-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OEP162 PE=2 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.4e-50
Identity = 106/172 (61.63%), Postives = 140/172 (81.40%), Query Frame = 0


Query: 9   LVDEIRCSHVGDFLYDLGHPLLNRVADSFVKAAGIGALQSASREAYFTV---AGSLDSHS 68
           ++DEIR S     L+DLGHPLLNR+ADSFVKAAG+GALQ+ SREAYFTV   AG   ++ 
Sbjct: 9   VMDEIR-SFEKAHLFDLGHPLLNRIADSFVKAAGVGALQAVSREAYFTVVDGAGFDSNNV 68

Query: 69  GAPPELSSARKQRFPGLKGETNKESLEAMVKSVGKESMQWGLAAGVYSGLTYGLKEAR-G 128
           G P E++  +K RFP L+GE++K SL+A+VK+ GKES+QWGLAAG+YSG+TYG+ E R G
Sbjct: 69  GPPSEITGNKKHRFPNLRGESSK-SLDALVKNTGKESLQWGLAAGLYSGITYGMTEVRGG 128

Query: 129 AHDWKNSAIAGAVTGVAVAL-TSDESSHEHIVQYAITGAAVSTAANIFAGIF 176
           AHDW+NSA+AGA+TG A+A+ TS+ +SHE +VQ A+TGAA+STAAN+ + +F
Sbjct: 129 AHDWRNSAVAGALTGAAMAMTTSERTSHEQVVQSALTGAAISTAANLLSSVF 178

[Close]

BLAST of Lag0031566 vs. ExPASy Swiss-Prot
Match: Q41050 (Outer envelope pore protein 16, chloroplastic OS=Pisum sativum OX=3888 GN=OEP16 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-15
Identity = 49/149 (32.89%), Postives = 72/149 (48.32%), Query Frame = 0


Query: 20  DFLYDLGHPLLNRVADSFVKAAGIGALQSASREAYFTVAGSLDSHSGAPPELSSARKQRF 79
           D + D+G+P LN   D F+K   + A +S + + +  +                      
Sbjct: 16  DVVIDMGNPFLNLTVDGFLKIGAVAATRSVAEDTFHIIR--------------------- 75

Query: 80  PGLKGETNKESLEAMVKSVGKESMQWGLAAGVYSGLTYGLKEARGAHDWKNSAIAGAVTG 139
              KG  +    E  +K + KE   WG  AGVY G+ YG++  RG  DWKN+   GAVTG
Sbjct: 76  ---KGSISSNDFEKSLKKMCKEGAYWGAIAGVYVGMEYGVERIRGTRDWKNAMFGGAVTG 135

Query: 140 VAVALTSDESSHEHIVQYAITGAAVSTAA 169
             V+  S+ +  + I   AITGAA++TAA
Sbjct: 136 ALVSAASN-NKKDKIAVDAITGAAIATAA 139

[Close]

BLAST of Lag0031566 vs. ExPASy Swiss-Prot
Match: Q9ZV24 (Outer envelope pore protein 16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OEP161 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.2e-15
Identity = 49/145 (33.79%), Postives = 73/145 (50.34%), Query Frame = 0


Query: 24  DLGHPLLNRVADSFVKAAGIGALQSASREAYFTVAGSLDSHSGAPPELSSARKQRFPGLK 83
           D+G+P LN   D+F+K   +G  +S + + Y  +                         K
Sbjct: 20  DMGNPFLNLTVDAFLKIGAVGVTKSLAEDTYKAID------------------------K 79

Query: 84  GETNKESLEAMVKSVGKESMQWGLAAGVYSGLTYGLKEARGAHDWKNSAIAGAVTGVAVA 143
           G  +K +LE  +K + KE + WG A GVY G  YG++  RG+ DWKN+ +AGA TG AV 
Sbjct: 80  GSLSKSTLEHALKKLCKEGVYWGAAGGVYIGTEYGIERIRGSRDWKNAMLAGAATG-AVL 139

Query: 144 LTSDESSHEHIVQYAITGAAVSTAA 169
               +   + IV  AI G A++TA+
Sbjct: 140 SAVGKKGKDTIVIDAILGGALATAS 139

[Close]

BLAST of Lag0031566 vs. ExPASy Swiss-Prot
Match: Q9LZH8 (Outer envelope pore protein 16-4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OEP164 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.0e-04
Identity = 28/76 (36.84%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 94  MVKSVGKESMQWGLAAGVYSGLTYGLKEARGAHDWKNSAIAGAVTGVAVALTSDESSHEH 153
           + KS+G+   Q GL +GV++    GL+  RG +DW N+ + GAV G AVA+++   +   
Sbjct: 52  VAKSIGRFGFQCGLVSGVFTMTHCGLQRYRGKNDWVNALVGGAVAGAAVAIST--RNWTQ 111

Query: 154 IVQYAITGAAVSTAAN 170
           +V  A   +A S  AN
Sbjct: 112 VVGMAGLVSAFSVLAN 125

The following BLAST results are available for this feature:

BLAST of Lag0031566 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875334.1	3.6e-80	91.48	outer envelope pore protein 16-2, chloroplastic [Benincasa hispida]	[more]
XP_008458360.1	4.0e-79	93.45	PREDICTED: outer envelope pore protein 16-2, chloroplastic [Cucumis melo]	[more]
XP_011657265.1	5.8e-78	91.67	outer envelope pore protein 16-2, chloroplastic [Cucumis sativus] >KAE8647078.1 ...	[more]
TYK02947.1	3.5e-75	82.20	outer envelope pore protein 16-2 [Cucumis melo var. makuwa]	[more]
XP_023514075.1	4.3e-73	87.50	outer envelope pore protein 16-2, chloroplastic-like isoform X2 [Cucurbita pepo ...	[more]

BLAST of Lag0031566 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0WMZ5	1.4e-50	61.63	Outer envelope pore protein 16-2, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
Q41050	1.1e-15	32.89	Outer envelope pore protein 16, chloroplastic OS=Pisum sativum OX=3888 GN=OEP16 ...	[more]
Q9ZV24	7.2e-15	33.79	Outer envelope pore protein 16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LZH8	2.0e-04	36.84	Outer envelope pore protein 16-4, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF02466	Tim17	coord: 30..165 e-value: 3.7E-15 score: 56.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..83
None	No IPR available	PANTHER	PTHR15371:SF1	OUTER ENVELOPE PORE PROTEIN 16-2, CHLOROPLASTIC	coord: 8..175
None	No IPR available	PANTHER	PTHR15371	TIM23	coord: 8..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0031566.1	Lag0031566.1	mRNA