Lag0031548 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0031548
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProtein of unknown function (DUF3511)
Locationchr11: 9847616 .. 9847933 (+)
RNA-Seq ExpressionLag0031548
SyntenyLag0031548
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCCAGAGGAAACAGAGGGAGGAGAGGAGGAGCGTTAAAATCACCGTGTAGGTCAGATACGTATATGAGCAGTGAGAATCAACAGCGGTTTCCGACGTCGACGTCGGCGGCGTGGAATACGCAGAGCCATTTGCACGGTGGTGGTTCGTCATTTTCGAATTCCAACGGCGGCGGGTACGATGAACCGGAGGCTAAAAGGCAACGGCGGATTGCCAAGTACAAGGCCTACGCCGTTGAAAGCAAATTGAAAGCGTCGCTTAGGACTGGGATTCGGTGGGTTAAGATCAAGTGTAGTGAGCTTCTTCATCGTTGA

mRNA sequence

ATGGCTGCCAGAGGAAACAGAGGGAGGAGAGGAGGAGCGTTAAAATCACCGTGTAGGTCAGATACGTATATGAGCAGTGAGAATCAACAGCGGTTTCCGACGTCGACGTCGGCGGCGTGGAATACGCAGAGCCATTTGCACGGTGGTGGTTCGTCATTTTCGAATTCCAACGGCGGCGGGTACGATGAACCGGAGGCTAAAAGGCAACGGCGGATTGCCAAGTACAAGGCCTACGCCGTTGAAAGCAAATTGAAAGCGTCGCTTAGGACTGGGATTCGGTGGGTTAAGATCAAGTGTAGTGAGCTTCTTCATCGTTGA

Coding sequence (CDS)

ATGGCTGCCAGAGGAAACAGAGGGAGGAGAGGAGGAGCGTTAAAATCACCGTGTAGGTCAGATACGTATATGAGCAGTGAGAATCAACAGCGGTTTCCGACGTCGACGTCGGCGGCGTGGAATACGCAGAGCCATTTGCACGGTGGTGGTTCGTCATTTTCGAATTCCAACGGCGGCGGGTACGATGAACCGGAGGCTAAAAGGCAACGGCGGATTGCCAAGTACAAGGCCTACGCCGTTGAAAGCAAATTGAAAGCGTCGCTTAGGACTGGGATTCGGTGGGTTAAGATCAAGTGTAGTGAGCTTCTTCATCGTTGA

Protein sequence

MAARGNRGRRGGALKSPCRSDTYMSSENQQRFPTSTSAAWNTQSHLHGGGSSFSNSNGGGYDEPEAKRQRRIAKYKAYAVESKLKASLRTGIRWVKIKCSELLHR
Homology
BLAST of Lag0031548 vs. NCBI nr
Match: KGN47400.1 (hypothetical protein Csa_023055 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 3.6e-27
Identity = 74/105 (70.48%), Postives = 80/105 (76.19%), Query Frame = 0

Query: 1   MAARGNRGRRGGALKSPCRSDTYMSSENQQRFPTSTSAAWNTQSHLHGGGSSFSNSNGGG 60
           MAA+GNR  RGG LKSPCRSDTY          T+   AWNT SHLHGG SS SN    G
Sbjct: 1   MAAKGNR-ERGGVLKSPCRSDTY----------TAAPTAWNTHSHLHGGSSSVSN----G 60

Query: 61  YDEPEAKRQRRIAKYKAYAVESKLKASLRTGIRWVKIKCSELLHR 106
           +DEPE KRQRRIAKYKAYAVESKLK+SLR+GIRWVKIKC+ELL R
Sbjct: 61  HDEPEVKRQRRIAKYKAYAVESKLKSSLRSGIRWVKIKCNELLQR 90

BLAST of Lag0031548 vs. NCBI nr
Match: KAG7026338.1 (hypothetical protein SDJN02_12839, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.7 bits (330), Expect = 3.6e-27
Identity = 73/105 (69.52%), Postives = 84/105 (80.00%), Query Frame = 0

Query: 1   MAARGNRGRRGGALKSPCRSDTYMSSENQQRFPTSTSAAWNTQSHLHGGGSSFSNSNGGG 60
           MAARG+   RGG LKSPCRSDTY+ +ENQQ+FP + +AA N  SHLH GGS+FS    GG
Sbjct: 1   MAARGHT-ERGGQLKSPCRSDTYIDTENQQQFPAAQTAAGNRHSHLH-GGSTFSK---GG 60

Query: 61  YDEPEAKRQRRIAKYKAYAVESKLKASLRTGIRWVKIKCSELLHR 106
            DE E KRQ+RIAKYKAYAVESK KAS+R+GIRWVKIKC +LL R
Sbjct: 61  SDESEVKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLLRR 100

BLAST of Lag0031548 vs. NCBI nr
Match: KAG6575094.1 (hypothetical protein SDJN03_25733, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013667.1 hypothetical protein SDJN02_23834, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 111.7 bits (278), Expect = 3.9e-21
Identity = 66/105 (62.86%), Postives = 71/105 (67.62%), Query Frame = 0

Query: 1   MAARGNRGRRGGALKSPCRSDTYMSSENQQRFPTSTSAAWNTQSHLHGGGSSFSNSNGGG 60
           MAA GNRG RG  LK PCRSDTY+SSEN Q    ST+A                      
Sbjct: 1   MAANGNRG-RGRELKKPCRSDTYVSSENHQLPAASTAAC--------------------- 60

Query: 61  YDEPEAKRQRRIAKYKAYAVESKLKASLRTGIRWVKIKCSELLHR 106
           +DEPEAKRQRR+AKYKAYAVESK KASLR GIRWVKIKCSELL+R
Sbjct: 61  HDEPEAKRQRRVAKYKAYAVESKFKASLRNGIRWVKIKCSELLNR 83

BLAST of Lag0031548 vs. NCBI nr
Match: KAG6593998.1 (hypothetical protein SDJN03_13474, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111.3 bits (277), Expect = 5.1e-21
Identity = 64/93 (68.82%), Postives = 74/93 (79.57%), Query Frame = 0

Query: 1  MAARGNRGRRGGALKSPCRSDTYMSSENQQRFPTSTSAAWNTQSHLHGGGSSFSNSNGGG 60
          MAARG+   RGG LKSPCRSDTY+ +ENQQ+FP + +AA N  SHLH GGS+FS    GG
Sbjct: 1  MAARGHT-ERGGQLKSPCRSDTYIDTENQQQFPAAQTAAGNRHSHLH-GGSTFSK---GG 60

Query: 61 YDEPEAKRQRRIAKYKAYAVESKLKASLRTGIR 94
           DE E KRQ+RIAKYKAYAVESK KAS+R+GIR
Sbjct: 61 SDESEVKRQKRIAKYKAYAVESKFKASIRSGIR 88

BLAST of Lag0031548 vs. NCBI nr
Match: XP_022138799.1 (uncharacterized protein LOC111009876 [Momordica charantia])

HSP 1 Score: 110.5 bits (275), Expect = 8.7e-21
Identity = 71/113 (62.83%), Postives = 77/113 (68.14%), Query Frame = 0

Query: 1   MAARGNRGRRGGALKSP--CRSDTYMSSEN-----QQRFPTSTSAAW-NTQSHLHGGGSS 60
           MA  GNR  RG   KS   C SD Y +  N      QRFP    AAW NT  H+H GGSS
Sbjct: 1   MATGGNR-ERGSEFKSAYICSSDNYGNEMNGRSQVNQRFP----AAWNNTHGHMH-GGSS 60

Query: 61  FSNSNGGGYDEPEAKRQRRIAKYKAYAVESKLKASLRTGIRWVKIKCSELLHR 106
           FS    GGYDEPEAKRQRRIAKYKAYAVESKLK+S R GIRWVKIKC+++ HR
Sbjct: 61  FS----GGYDEPEAKRQRRIAKYKAYAVESKLKSSFRNGIRWVKIKCNDIFHR 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN47400.13.6e-2770.48hypothetical protein Csa_023055 [Cucumis sativus][more]
KAG7026338.13.6e-2769.52hypothetical protein SDJN02_12839, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6575094.13.9e-2162.86hypothetical protein SDJN03_25733, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6593998.15.1e-2168.82hypothetical protein SDJN03_13474, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022138799.18.7e-2162.83uncharacterized protein LOC111009876 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021899Protein of unknown function DUF3511PFAMPF12023DUF3511coord: 62..104
e-value: 2.9E-21
score: 75.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..59
NoneNo IPR availablePANTHERPTHR33193DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATEDcoord: 27..104
NoneNo IPR availablePANTHERPTHR33193:SF13DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATEDcoord: 27..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0031548.1Lag0031548.1mRNA