Lag0031545 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0031545
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGATA transcription factor 16-like
Locationchr11: 9820578 .. 9821196 (+)
RNA-Seq ExpressionLag0031545
SyntenyLag0031545
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGATCCGATTGAGGATGTGAGTGATCGCGATTCGCGAGCCTTTTCTTCAGTTCATGTTACTACTGATTTTGAAATTTAAGACTTCTTATTCGATTGTACTGTGCTCAAATGTAGGGATCGGAGTTCAAGGACGCCGGAAAGTCGTCGTCGCCGGCCGAAAGTGAGCAGAATAAAAAGACCTGCGCCGATTGCGGCACGACGAAGACTCCTCTCTGGCGCGGAGGTCCGGCCGGCCCTAAGGTGATTTTTCATCTCCATCTCTCAACTCGATCGAATATTCTGTTTTGTTCTCCTTTTCTGTTGCTCGATTATAACGATCATAGCATTTTTTTCCCCCTCAGTCTCTTTGCAATGCGTGTGGAATCAGAAGCAGGAAAAAGAGAAGATCACTTCTAGGGTTAAACAGAGGCGGCGAAGTGGAGAGAAAAAACAAGGGAAGTAGTAACAGAAGCAGCAATGGCGGTGGAAATCAGGCAAAAATGGGAGGAAATAGCTTGAAATGGAGATTAATGGCGTTTGGTAGAGAAGAGTTGATGCAAAGGAAACAGTTAGGAGAGGAAGAACAAGCTGCTGTTTTACTAATGGCTCTTTCATATGGATCTGTATATGCTTGA

mRNA sequence

ATGATGGATCCGATTGAGGATGGATCGGAGTTCAAGGACGCCGGAAAGTCGTCGTCGCCGGCCGAAAGTGAGCAGAATAAAAAGACCTGCGCCGATTGCGGCACGACGAAGACTCCTCTCTGGCGCGGAGGTCCGGCCGGCCCTAAGTCTCTTTGCAATGCGTGTGGAATCAGAAGCAGGAAAAAGAGAAGATCACTTCTAGGGTTAAACAGAGGCGGCGAAGTGGAGAGAAAAAACAAGGGAAGTAGTAACAGAAGCAGCAATGGCGGTGGAAATCAGGCAAAAATGGGAGGAAATAGCTTGAAATGGAGATTAATGGCGTTTGGTAGAGAAGAGTTGATGCAAAGGAAACAGTTAGGAGAGGAAGAACAAGCTGCTGTTTTACTAATGGCTCTTTCATATGGATCTGTATATGCTTGA

Coding sequence (CDS)

ATGATGGATCCGATTGAGGATGGATCGGAGTTCAAGGACGCCGGAAAGTCGTCGTCGCCGGCCGAAAGTGAGCAGAATAAAAAGACCTGCGCCGATTGCGGCACGACGAAGACTCCTCTCTGGCGCGGAGGTCCGGCCGGCCCTAAGTCTCTTTGCAATGCGTGTGGAATCAGAAGCAGGAAAAAGAGAAGATCACTTCTAGGGTTAAACAGAGGCGGCGAAGTGGAGAGAAAAAACAAGGGAAGTAGTAACAGAAGCAGCAATGGCGGTGGAAATCAGGCAAAAATGGGAGGAAATAGCTTGAAATGGAGATTAATGGCGTTTGGTAGAGAAGAGTTGATGCAAAGGAAACAGTTAGGAGAGGAAGAACAAGCTGCTGTTTTACTAATGGCTCTTTCATATGGATCTGTATATGCTTGA

Protein sequence

MMDPIEDGSEFKDAGKSSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNRSSNGGGNQAKMGGNSLKWRLMAFGREELMQRKQLGEEEQAAVLLMALSYGSVYA
Homology
[Close]
BLAST of Lag0031545 vs. NCBI nr
Match: XP_022138518.1 (GATA transcription factor 16-like [Momordica charantia])

HSP 1 Score: 249.6 bits (636), Expect = 1.6e-62
Identity = 129/142 (90.85%), Postives = 138/142 (97.18%), Query Frame = 0 

Query: 1   MMDPIEDGSEFKDAGKS---SSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGI 60
           MMDPIE+GSEFKDAG+S   +SPAESEQN+KTCADCGTTKTPLWRGGPAGPKSLCNACGI
Sbjct: 1   MMDPIEEGSEFKDAGRSPRKASPAESEQNRKTCADCGTTKTPLWRGGPAGPKSLCNACGI 60

Query: 61  RSRKKRRSLLGLNRGGEVERKNKGSSNRSSNGGGNQAKMGGNSLKWRLMAFGREELMQRK 120
           RSRKKRRSLLGLNRG EVERKNKGSSNR+SNGGGNQAK+GG++LKWRLMAFGREELMQR+
Sbjct: 61  RSRKKRRSLLGLNRGSEVERKNKGSSNRTSNGGGNQAKIGGDNLKWRLMAFGREELMQRR 120

Query: 121 QLGEEEQAAVLLMALSYGSVYA 140
           QLGEEEQAAVLLMALSYGSVYA
Sbjct: 121 QLGEEEQAAVLLMALSYGSVYA 142

[Close]
BLAST of Lag0031545 vs. NCBI nr
Match: XP_038875288.1 (GATA transcription factor 16-like [Benincasa hispida])

HSP 1 Score: 245.0 bits (624), Expect = 3.9e-61
Identity = 128/139 (92.09%), Postives = 133/139 (95.68%), Query Frame = 0 

Query: 1   MMDPIEDGSEFKDAGKSSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSR 60
           MMDPIE+GSEFKDAGK SSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSR
Sbjct: 1   MMDPIEEGSEFKDAGK-SSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSR 60

Query: 61  KKRRSLLGLNRGGEVERKNKGSSNRSSNGGGNQAKMGGNSLKWRLMAFGREELMQRKQLG 120
           KKRRSLLGLNRGGEVERK+KGSSNRS+NGGGNQ K+G  SLKWR MAFGR ELMQR+QLG
Sbjct: 61  KKRRSLLGLNRGGEVERKSKGSSNRSNNGGGNQTKIGRESLKWRSMAFGRNELMQRRQLG 120

Query: 121 EEEQAAVLLMALSYGSVYA 140
           EEEQAAVLLMALSYGSVYA
Sbjct: 121 EEEQAAVLLMALSYGSVYA 138

[Close]
BLAST of Lag0031545 vs. NCBI nr
Match: XP_004150081.1 (GATA transcription factor 16 [Cucumis sativus] >KGN47402.1 hypothetical protein Csa_022928 [Cucumis sativus])

HSP 1 Score: 241.5 bits (615), Expect = 4.3e-60
Identity = 127/140 (90.71%), Postives = 134/140 (95.71%), Query Frame = 0 

Query: 1   MMDPIEDGSEFKDAGKSSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSR 60
           MMDPIE+GSEFKDAGK +SP ESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSR
Sbjct: 1   MMDPIEEGSEFKDAGK-TSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSR 60

Query: 61  KKRRSLLGLNRGGEVERKNKGSS-NRSSNGGGNQAKMGGNSLKWRLMAFGREELMQRKQL 120
           KKRRSLLGLNRGGEVERKNKGSS NR++NGGGNQ K+GG SLKWR MAFGR+ELMQR+QL
Sbjct: 61  KKRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRRQL 120

Query: 121 GEEEQAAVLLMALSYGSVYA 140
           GEEEQAAVLLMALSYGSVYA
Sbjct: 121 GEEEQAAVLLMALSYGSVYA 139

[Close]
BLAST of Lag0031545 vs. NCBI nr
Match: XP_008458384.1 (PREDICTED: GATA transcription factor 16-like isoform X1 [Cucumis melo] >TYK02936.1 GATA transcription factor 16-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 240.4 bits (612), Expect = 9.6e-60
Identity = 127/140 (90.71%), Postives = 133/140 (95.00%), Query Frame = 0 

Query: 1   MMDPIEDGSEFKDAGKSSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSR 60
           MMDPIE+GSEFKDAGK +SP ESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSR
Sbjct: 1   MMDPIEEGSEFKDAGK-TSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSR 60

Query: 61  KKRRSLLGLNRGGEVERKNKGSS-NRSSNGGGNQAKMGGNSLKWRLMAFGREELMQRKQL 120
           KKRRSLLGLNRGGEVERKNKGSS NR++NGGGNQ K+GG SLKWR MAFGR+ELMQR QL
Sbjct: 61  KKRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRTQL 120

Query: 121 GEEEQAAVLLMALSYGSVYA 140
           GEEEQAAVLLMALSYGSVYA
Sbjct: 121 GEEEQAAVLLMALSYGSVYA 139

[Close]
BLAST of Lag0031545 vs. NCBI nr
Match: XP_023548663.1 (GATA transcription factor 16-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 239.2 bits (609), Expect = 2.1e-59
Identity = 125/142 (88.03%), Postives = 134/142 (94.37%), Query Frame = 0 

Query: 1   MMDPIEDGSEFKDAGKS---SSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGI 60
           MMDPIE+GSEFKDA  S   SSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGI
Sbjct: 1   MMDPIEEGSEFKDAENSPRMSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGI 60

Query: 61  RSRKKRRSLLGLNRGGEVERKNKGSSNRSSNGGGNQAKMGGNSLKWRLMAFGREELMQRK 120
           RSRKKRRSLLGLNRG EVERK+KGSSNR+SNGGGNQAK+GG++LKWR  AFGR++LMQR+
Sbjct: 61  RSRKKRRSLLGLNRGSEVERKSKGSSNRNSNGGGNQAKLGGDNLKWRSTAFGRKDLMQRR 120

Query: 121 QLGEEEQAAVLLMALSYGSVYA 140
           QLGEEEQAAVLLMALSYGSVYA
Sbjct: 121 QLGEEEQAAVLLMALSYGSVYA 142

[Close]
BLAST of Lag0031545 vs. ExPASy Swiss-Prot
Match: Q9FJ10 (GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.5e-26
Identity = 75/117 (64.10%), Postives = 84/117 (71.79%), Query Frame = 0 

Query: 27  KKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNRS 86
           KKTCADCGT+KTPLWRGGP GPKSLCNACGIR+RKKRR       G E  +K K    +S
Sbjct: 35  KKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKRRG------GTEDNKKLK----KS 94

Query: 87  SNGGGNQAKMGGNSLKWRLMAFGREEL----MQRKQLGEEEQAAVLLMALSYGSVYA 140
           S+GGGN  +  G SLK  LM  G  +      QR++LGEEEQAAVLLMALSYGSVYA
Sbjct: 95  SSGGGN--RKFGESLKQSLMDLGIRKRSTVEKQRQKLGEEEQAAVLLMALSYGSVYA 139

[Close]
BLAST of Lag0031545 vs. ExPASy Swiss-Prot
Match: Q8LG10 (GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2)

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-25
Identity = 83/147 (56.46%), Postives = 94/147 (63.95%), Query Frame = 0 

Query: 2   MDPIEDGSEFKDAGKSSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 61
           +D IE+ S       SSS       KK+CA CGT+KTPLWRGGPAGPKSLCNACGIR+RK
Sbjct: 21  VDAIEEHS------SSSSNEAISNEKKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRK 80

Query: 62  KRRSLLGLNRGGEVERKNKGSSNRSSNGGGNQAKMGGNSLKWRLMAFGREELMQ------ 121
           KRR+L+  NR    E K K S NR+           G+SLK RLM  GRE +MQ      
Sbjct: 81  KRRTLIS-NRS---EDKKKKSHNRNPK--------FGDSLKQRLMELGREVMMQRSTAEN 140

Query: 122 --RKQLGEEEQAAVLLMALSY-GSVYA 140
             R +LGEEEQAAVLLMALSY  SVYA
Sbjct: 141 QRRNKLGEEEQAAVLLMALSYASSVYA 149

[Close]
BLAST of Lag0031545 vs. ExPASy Swiss-Prot
Match: Q9LIB5 (GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.2e-18
Identity = 64/162 (39.51%), Postives = 86/162 (53.09%), Query Frame = 0 

Query: 17  SSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVE 76
           S   + S   K+TC DCGT +TPLWRGGPAGPKSLCNACGI+SRKKR++ LG+    E +
Sbjct: 31  SGGGSSSGDTKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGMR--SEEK 90

Query: 77  RKNKGS------------------------------------SNRSSNGGGNQAKMGGNS 136
           +KN+ S                                    + RSS+   N+       
Sbjct: 91  KKNRKSNCNNDLNLDHRNAKKYKINIVDDGKIDIDDDPKICNNKRSSSSSSNKGVSKFLD 150

Query: 137 LKWRLMAFGREELMQR---KQLGEEEQAAVLLMALSYGSVYA 140
           L +++    R  + ++   ++LGEEE+AAVLLMALS  SVYA
Sbjct: 151 LGFKVPVMKRSAVEKKRLWRKLGEEERAAVLLMALSCSSVYA 190

[Close]
BLAST of Lag0031545 vs. ExPASy Swiss-Prot
Match: Q8LC59 (GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 8.3e-14
Identity = 53/119 (44.54%), Postives = 73/119 (61.34%), Query Frame = 0 

Query: 22  ESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRS-LLGLNRGGEVERKNK 81
           E +   + C++C TTKTP+WRGGP GPKSLCNACGIR RK+RRS LLG++    + R +K
Sbjct: 20  EEKGTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLGIH----IIRSHK 79

Query: 82  GSSNRSSNGGGNQAKMGGNSLKWRLMAFGREELMQRKQLGEEEQAAVLLMALSYGSVYA 140
             +++  N     +  GG ++K            +R+ L EEEQAA+ L+ LS  SV A
Sbjct: 80  SLASKKIN--LLSSSHGGVAVK------------KRRSLKEEEQAALCLLLLSCSSVLA 120

[Close]
BLAST of Lag0031545 vs. ExPASy Swiss-Prot
Match: Q6YW48 (Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CGA1 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.5e-12
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 28  KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGG 74
           + C+DC TTKTPLWR GP GPKSLCNACGIR RK RR++     GG
Sbjct: 176 RVCSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKARRAMAAAANGG 221

The following BLAST results are available for this feature:
BLAST of Lag0031545 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022138518.11.6e-6290.85GATA transcription factor 16-like [Momordica charantia][more]
XP_038875288.13.9e-6192.09GATA transcription factor 16-like [Benincasa hispida][more]
XP_004150081.14.3e-6090.71GATA transcription factor 16 [Cucumis sativus] >KGN47402.1 hypothetical protein ... [more]
XP_008458384.19.6e-6090.71PREDICTED: GATA transcription factor 16-like isoform X1 [Cucumis melo] >TYK02936... [more]
XP_023548663.12.1e-5988.03GATA transcription factor 16-like [Cucurbita pepo subsp. pepo][more]
BLAST of Lag0031545 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FJ101.5e-2664.10GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1[more]
Q8LG101.6e-2556.46GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2[more]
Q9LIB57.2e-1839.51GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1[more]
Q8LC598.3e-1444.54GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2[more]
Q6YW483.5e-1267.39Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. ... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000679Zinc finger, GATA-typeSMARTSM00401GATA_3coord: 24..82
e-value: 8.0E-13
score: 58.6
IPR000679Zinc finger, GATA-typePFAMPF00320GATAcoord: 30..64
e-value: 4.4E-17
score: 61.4
IPR000679Zinc finger, GATA-typePROSITEPS00344GATA_ZN_FINGER_1coord: 30..55
IPR000679Zinc finger, GATA-typePROSITEPS50114GATA_ZN_FINGER_2coord: 24..60
score: 12.545015
IPR000679Zinc finger, GATA-typeCDDcd00202ZnF_GATAcoord: 29..80
e-value: 8.41403E-14
score: 59.6938
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 24..93
e-value: 4.3E-17
score: 63.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..53
NoneNo IPR availablePANTHERPTHR47172OS01G0976800 PROTEINcoord: 1..139
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 26..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0031545.1Lag0031545.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0008270 zinc ion binding