Lag0031507 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0031507
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr11: 9379825 .. 9380328 (+)
RNA-Seq ExpressionLag0031507
SyntenyLag0031507
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGACTTAGTTAGTCGATGGAACTCGTGGAGATTGACAGAGGAGGAGGCAGAGATGGTACGACCAGGGGAGGGGACACCAGTTCTGTCAATGGGCTCGATAGAGCTGTGTGTGATAGGTAAAGTCTTCTCCTCGAAGCGGGTAAATGTGGAGGCGTTTCGAAGTGTTATGAGGGCAGCATGGAGAGTTCATGGGGTGACGCGCATAGAATCTGCGGTTGAAAATTTATTTGCTATTCAGTTCCATTCCAGAGGGGAAAAGGGGTGTGTGATGTCGACAGGTCCATGGGCTTTTGATCGGTCTCTGGTGGTTCTGAAAGAGCCGAGGTCTGCAGGTTCGGTTTTGGATGTGGAGTTTAATTATTGTGCCTTTTGGGTGCAGATTCATAATGTTCCTATGCGTTGGCAGACGAGAGAGATGGCTCGACAGTTGGGAGATAAGTTCGGAACCGTGGAGGAAGTTGGTGGATCGCAGGGAGGCGATTGGACTGGAATAGGCTAG

mRNA sequence

ATGGAAGACTTAGTTAGTCGATGGAACTCGTGGAGATTGACAGAGGAGGAGGCAGAGATGGTACGACCAGGGGAGGGGACACCAGTTCTGTCAATGGGCTCGATAGAGCTGTGTGTGATAGGTAAAGTCTTCTCCTCGAAGCGGGTAAATGTGGAGGCGTTTCGAAGTGTTATGAGGGCAGCATGGAGAGTTCATGGGGTGACGCGCATAGAATCTGCGGTTGAAAATTTATTTGCTATTCAGTTCCATTCCAGAGGGGAAAAGGGGTGTGTGATGTCGACAGGTCCATGGGCTTTTGATCGGTCTCTGGTGGTTCTGAAAGAGCCGAGGTCTGCAGGTTCGGTTTTGGATGTGGAGTTTAATTATTGTGCCTTTTGGGTGCAGATTCATAATGTTCCTATGCGTTGGCAGACGAGAGAGATGGCTCGACAGTTGGGAGATAAGTTCGGAACCGTGGAGGAAGTTGGTGGATCGCAGGGAGGCGATTGGACTGGAATAGGCTAG

Coding sequence (CDS)

ATGGAAGACTTAGTTAGTCGATGGAACTCGTGGAGATTGACAGAGGAGGAGGCAGAGATGGTACGACCAGGGGAGGGGACACCAGTTCTGTCAATGGGCTCGATAGAGCTGTGTGTGATAGGTAAAGTCTTCTCCTCGAAGCGGGTAAATGTGGAGGCGTTTCGAAGTGTTATGAGGGCAGCATGGAGAGTTCATGGGGTGACGCGCATAGAATCTGCGGTTGAAAATTTATTTGCTATTCAGTTCCATTCCAGAGGGGAAAAGGGGTGTGTGATGTCGACAGGTCCATGGGCTTTTGATCGGTCTCTGGTGGTTCTGAAAGAGCCGAGGTCTGCAGGTTCGGTTTTGGATGTGGAGTTTAATTATTGTGCCTTTTGGGTGCAGATTCATAATGTTCCTATGCGTTGGCAGACGAGAGAGATGGCTCGACAGTTGGGAGATAAGTTCGGAACCGTGGAGGAAGTTGGTGGATCGCAGGGAGGCGATTGGACTGGAATAGGCTAG

Protein sequence

MEDLVSRWNSWRLTEEEAEMVRPGEGTPVLSMGSIELCVIGKVFSSKRVNVEAFRSVMRAAWRVHGVTRIESAVENLFAIQFHSRGEKGCVMSTGPWAFDRSLVVLKEPRSAGSVLDVEFNYCAFWVQIHNVPMRWQTREMARQLGDKFGTVEEVGGSQGGDWTGIG
Homology
BLAST of Lag0031507 vs. NCBI nr
Match: XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])

HSP 1 Score: 163.7 bits (413), Expect = 1.4e-36
Identity = 72/165 (43.64%), Postives = 104/165 (63.03%), Query Frame = 0

Query: 1   MEDLVSRWNSWRLTEEEAEMVRPGEGTPVLSMGSIELCVIGKVFSSKRVNVEAFRSVMRA 60
           M+++   W  ++ T +E E V    G P+L+  +++LCV+ K+ +SKR++ EA RSVM++
Sbjct: 1   MDEITDLWEHFKSTNDENETVTIDRGKPILTADNVKLCVVAKLHTSKRISAEAIRSVMKS 60

Query: 61  AWRVHGVTRIESAVENLFAIQFHSRGEKGCVMSTGPWAFDRSLVVLKEPRSAGSVLDVEF 120
            WRVH  TR E    N++ I F S  EK  V+S+GPW F++SL+VL  P +    LD+ F
Sbjct: 61  VWRVHNSTRFEPLGMNIYVILFKSLSEKSRVLSSGPWTFNKSLLVLTSPTATNQPLDMNF 120

Query: 121 NYCAFWVQIHNVPMRWQTREMARQLGDKFGTVEEVGGSQGGDWTG 166
           N+CAFW+QIHN+P    + EMA  LG K G VEE+ G     W G
Sbjct: 121 NFCAFWIQIHNIPFECISTEMANILGAKLGDVEEIEGDGADGWAG 165

BLAST of Lag0031507 vs. NCBI nr
Match: XP_022158119.1 (uncharacterized protein LOC111024676, partial [Momordica charantia])

HSP 1 Score: 159.5 bits (402), Expect = 2.6e-35
Identity = 71/155 (45.81%), Postives = 104/155 (67.10%), Query Frame = 0

Query: 1   MEDLVSRWNSWRLTEEEAEMVRPGEGTPVLSMGSIELCVIGKVFSSKRVNVEAFRSVMRA 60
           M+++   W ++ LT EE E        P+L+  +I+LC +GK+ +SKR++ +A  SVM+ 
Sbjct: 1   MDEITELWENFNLTNEEEETFIVDNQQPILTAENIQLCGVGKLHTSKRISAKALASVMKQ 60

Query: 61  AWRVHGVTRIESAVENLFAIQFHSRGEKGCVMSTGPWAFDRSLVVLKEPRSAGSVLDVEF 120
            W++H  TRIE+A  N++ I F +  EK  V+S+GPW FD+SL VL  P +A   LDV+F
Sbjct: 61  VWKIHESTRIEAAGLNIYVIAFKTMVEKKRVLSSGPWTFDKSLFVLVSPTAADKPLDVDF 120

Query: 121 NYCAFWVQIHNVPMRWQTREMARQLGDKFGTVEEV 156
            +CAFWVQIH +P  + TR+MA+ LGD+ G VEEV
Sbjct: 121 RFCAFWVQIHCIPFEYLTRDMAKLLGDRLGKVEEV 155

BLAST of Lag0031507 vs. NCBI nr
Match: XP_022156711.1 (uncharacterized protein LOC111023555 [Momordica charantia])

HSP 1 Score: 155.2 bits (391), Expect = 4.9e-34
Identity = 69/163 (42.33%), Postives = 103/163 (63.19%), Query Frame = 0

Query: 1   MEDLVSRWNSWRLTEEEAEMVRPGEGTPVLSMGSIELCVIGKVFSSKRVNVEAFRSVMRA 60
           M+D+   W ++ L +EE + +      P+L++ +I+LC +GK+  SKR+ VEAF SVM+ 
Sbjct: 1   MDDITKLWENFTLIKEEEDTIVIDNQKPILTVDNIQLCAVGKLHPSKRITVEAFASVMKQ 60

Query: 61  AWRVHGVTRIESAVENLFAIQFHSRGEKGCVMSTGPWAFDRSLVVLKEPRSAGSVLDVEF 120
            W++H  TRIE+A  N++ I F +  EK  V S GPW FD+SL++L    +A   LD++ 
Sbjct: 61  VWKIHNSTRIETAGLNIYVIAFKTMAEKIRVFSLGPWTFDKSLLILVPTTAANKPLDIDI 120

Query: 121 NYCAFWVQIHNVPMRWQTREMARQLGDKFGTVEEVGGSQGGDW 164
           + CAFWVQIH +     T++MA+ LG + G VEEV G    DW
Sbjct: 121 SLCAFWVQIHYITFECMTKDMAKFLGARLGEVEEVDGMSSYDW 163

BLAST of Lag0031507 vs. NCBI nr
Match: XP_022155933.1 (uncharacterized protein LOC111022932 [Momordica charantia])

HSP 1 Score: 145.2 bits (365), Expect = 5.0e-31
Identity = 64/165 (38.79%), Postives = 107/165 (64.85%), Query Frame = 0

Query: 1   MEDLVSRWNSWRLTEEEAEMVRPGEGTPVLSMGSIELCVIGKVFSSKRVNVEAFRSVMRA 60
           M+++   W ++ LT+E+ E +      P+++  +++   +GK+ +SKR++VEAFRSVM++
Sbjct: 1   MDEITELWENFTLTKEKEETIIIDSEKPLMTPENVQRYAVGKLHTSKRISVEAFRSVMKS 60

Query: 61  AWRVHGVTRIESAVENLFAIQFHSRGEKGCVMSTGPWAFDRSLVVLKEPRSAGSVLDVEF 120
            W+VH  T IE+A  NL+ I F S  EK  V+++GPW+F+ SL+VL  P +     D+ F
Sbjct: 61  LWKVHESTHIETAGMNLYVIVFKSMAEKNRVLTSGPWSFETSLLVLTSPTATDQPRDMNF 120

Query: 121 NYCAFWVQIHNVPMRWQTREMARQLGDKFGTVEEVGGSQGGDWTG 166
           N+ A W+QIH +P +   ++MA+ LG + G VEE+  +   +WTG
Sbjct: 121 NFFALWIQIHCIPFQCMIKDMAKFLGTRIGEVEEIDCNGSYEWTG 165

BLAST of Lag0031507 vs. NCBI nr
Match: XP_015381281.1 (uncharacterized protein LOC107174698 [Citrus sinensis])

HSP 1 Score: 123.6 bits (309), Expect = 1.6e-24
Identity = 63/165 (38.18%), Postives = 91/165 (55.15%), Query Frame = 0

Query: 2   EDLVSRWNSWRLTEEEAEMVRPGEGTPVLSMGSIELCVIGKVFSSKRVNVEAFRSVMRAA 61
           E+LV +  +  L EEE ++V             +  C++GKV  +++VN E  +  M+ A
Sbjct: 4   EELVRKCQAINLEEEEEDIVTFMGSMKTRGEKMVANCLVGKVLLTRKVNREGLKVAMQNA 63

Query: 62  WRVHGVTRIESAVENLFAIQFHSRGEKGCVMSTGPWAFDRSLVVLKEPRSAGSVLDVEFN 121
           WR     +IES  EN F  +F    EK  V+  GPW FDR+L+VL EP   G++ +  F 
Sbjct: 64  WRTVKEVKIESMGENRFLFKFGLEEEKKRVLMGGPWHFDRALLVLTEPDGIGNIKNQPFT 123

Query: 122 YCAFWVQIHNVPMRWQTREMARQLGDKFGTVEEVGGSQGGDWTGI 167
           + +FWVQ+HN+PM    RE  ++LG K G VEEV     GD  G+
Sbjct: 124 HSSFWVQLHNIPMMCMNRETIQELGKKLGKVEEVETDNAGDCIGL 168

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022149484.11.4e-3643.64uncharacterized protein LOC111017902 [Momordica charantia][more]
XP_022158119.12.6e-3545.81uncharacterized protein LOC111024676, partial [Momordica charantia][more]
XP_022156711.14.9e-3442.33uncharacterized protein LOC111023555 [Momordica charantia][more]
XP_022155933.15.0e-3138.79uncharacterized protein LOC111022932 [Momordica charantia][more]
XP_015381281.11.6e-2438.18uncharacterized protein LOC107174698 [Citrus sinensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 34..155
e-value: 3.5E-17
score: 62.3
IPR040256Uncharacterized protein At4g02000-likePANTHERPTHR31286GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKEcoord: 32..151
NoneNo IPR availablePANTHERPTHR31286:SF84SUBFAMILY NOT NAMEDcoord: 32..151

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0031507.1Lag0031507.1mRNA