Lag0031493 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0031493
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionPMD domain-containing protein
Locationchr11: 9227045 .. 9227789 (-)
RNA-Seq ExpressionLag0031493
SyntenyLag0031493
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTATCTGTCAGCGCGATGTAAAGATTCCTTAATTATCGAACCCTACAACCCCCACAGATTCGGCCGCCAATTTGGCTTCTATCAAGACATACCTAATGACTTAGGAGGAACTTTGCCCCTAGTCACCTTGGAAAACATTTTACACCACTGACGGGTTTGCCTACGAACTAGTGTGGAGTTTCAAATATTTCTTCCAGCTCGTACATTGAACCCTCAAGACCATGTCATCTCACGTTACCGAAGTTGGTGGTCTGAAAAGTATGATAATTACCTAGGGGACGGCGTAAGTAAGTTGGTTGACAATACTACTCCTTCTCGAACCCAGCCTAAGCCACCTACAAAAAATGATTCTAAATTTGGGGGCAAAGAACTCCGTCTGCTCAAGGTTGTCAGGCCTCTAGATGATTCGACCGAAGAAGAGAGTCAAAACAGCACTGGAGATCGACACTGGAAAAGAGCCAAAAGACCCAGGAAATATTCTGATCTCGCAGACAAGTCCATCAAGAGTGCCTCTATTGCTTCACAGACTCCTGACGACATCGAGAATTTGGTTGATTTTTTTTTTTTTTTTTTTTTTTTACTTAAATCCTGTTTTATTTCTCTTTTGCAGCTTCCTTCAAATGACCGTGCTCAAGAAGAGGAAGAATGTTCGAGCGATCAGTCTTTGACAAGTCCTGATGCTTTTGTTTCTTCTGTGAAGAACTTCGGAACTCCCATGCATCCTCGAGCAAACAAGTCATGA

mRNA sequence

ATGCTATCTGTCAGCGCGATTGTGGAGTTTCAAATATTTCTTCCAGCTCGTACATTGAACCCTCAAGACCATGTCATCTCACGTTACCGAAGTTGGTGGTCTGAAAAGTATGATAATTACCTAGGGGACGGCGTAAGTAAGTTGGTTGACAATACTACTCCTTCTCGAACCCAGCCTAAGCCACCTACAAAAAATGATTCTAAATTTGGGGGCAAAGAACTCCGTCTGCTCAAGGTTGTCAGGCCTCTAGATGATTCGACCGAAGAAGAGAGTCAAAACAGCACTGGAGATCGACACTGGAAAAGAGCCAAAAGACCCAGGAAATATTCTGATCTCGCAGACAAGTCCATCAAGAGTGCCTCTATTGCTTCACAGACTCCTGACGACATCGAGAATTTGCTTCCTTCAAATGACCGTGCTCAAGAAGAGGAAGAATGTTCGAGCGATCAGTCTTTGACAAGTCCTGATGCTTTTGTTTCTTCTGTGAAGAACTTCGGAACTCCCATGCATCCTCGAGCAAACAAGTCATGA

Coding sequence (CDS)

ATGCTATCTGTCAGCGCGATTGTGGAGTTTCAAATATTTCTTCCAGCTCGTACATTGAACCCTCAAGACCATGTCATCTCACGTTACCGAAGTTGGTGGTCTGAAAAGTATGATAATTACCTAGGGGACGGCGTAAGTAAGTTGGTTGACAATACTACTCCTTCTCGAACCCAGCCTAAGCCACCTACAAAAAATGATTCTAAATTTGGGGGCAAAGAACTCCGTCTGCTCAAGGTTGTCAGGCCTCTAGATGATTCGACCGAAGAAGAGAGTCAAAACAGCACTGGAGATCGACACTGGAAAAGAGCCAAAAGACCCAGGAAATATTCTGATCTCGCAGACAAGTCCATCAAGAGTGCCTCTATTGCTTCACAGACTCCTGACGACATCGAGAATTTGCTTCCTTCAAATGACCGTGCTCAAGAAGAGGAAGAATGTTCGAGCGATCAGTCTTTGACAAGTCCTGATGCTTTTGTTTCTTCTGTGAAGAACTTCGGAACTCCCATGCATCCTCGAGCAAACAAGTCATGA

Protein sequence

MLSVSAIVEFQIFLPARTLNPQDHVISRYRSWWSEKYDNYLGDGVSKLVDNTTPSRTQPKPPTKNDSKFGGKELRLLKVVRPLDDSTEEESQNSTGDRHWKRAKRPRKYSDLADKSIKSASIASQTPDDIENLLPSNDRAQEEEECSSDQSLTSPDAFVSSVKNFGTPMHPRANKS
Homology
BLAST of Lag0031493 vs. NCBI nr
Match: KAA0041618.1 (hypothetical protein E6C27_scaffold93G00910 [Cucumis melo var. makuwa])

HSP 1 Score: 101.7 bits (252), Expect = 6.7e-18
Identity = 58/164 (35.37%), Postives = 86/164 (52.44%), Query Frame = 0

Query: 10  FQIFLPARTLNPQDHVISRYRSWWSEKYDNYLGDGVSKLVDNTTPSRTQPKPPTKNDSKF 69
           F+++LPAR+L P  HV  R+  WW+ K+  Y  D    LV +  P  +QP+ P    S  
Sbjct: 491 FELYLPARSLEPCKHVTQRFTDWWTTKHGTYFEDNRHHLVSSVIPPPSQPRLPKNRGSNL 550

Query: 70  GGKELRLLKVVRP--LDDSTEEESQNSTGDRHWKRAKRPRKYSDLADKSIKSASIASQTP 129
           GGKE+RL++ + P   ++  E ES +S  D HW   KRP K + ++D       +++   
Sbjct: 551 GGKEIRLVEAMAPNLEEEVKEHESDSSKSDHHW---KRPLKKAKVSDDHPNGRGLSALEV 610

Query: 130 DDIENLLPSNDRAQEEEECSSDQSLTSPDAFVSSVKNFGTPMHP 172
            D+  L P ND  +   E  SD+SLT P A  S+ +  GT   P
Sbjct: 611 PDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTP 651

BLAST of Lag0031493 vs. NCBI nr
Match: TYK19639.1 (hypothetical protein E5676_scaffold242G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 4.4e-17
Identity = 57/164 (34.76%), Postives = 85/164 (51.83%), Query Frame = 0

Query: 10  FQIFLPARTLNPQDHVISRYRSWWSEKYDNYLGDGVSKLVDNTTPSRTQPKPPTKNDSKF 69
           F+++LPAR+L P  HV  R+  WW+ K+  Y  D    LV +  P  +QP+ P    S  
Sbjct: 475 FELYLPARSLEPCKHVTQRFTDWWTTKHGTYFEDNRHHLVSSVIPPPSQPRLPKNRGSNL 534

Query: 70  GGKELRLLKVVRP--LDDSTEEESQNSTGDRHWKRAKRPRKYSDLADKSIKSASIASQTP 129
           GGKE+RL++ + P   ++  E ES +S  D HW   KRP K + ++        +++   
Sbjct: 535 GGKEIRLVEAMAPNLEEEVKEHESDSSKSDHHW---KRPLKKAKVSGDHPNGRGLSALEV 594

Query: 130 DDIENLLPSNDRAQEEEECSSDQSLTSPDAFVSSVKNFGTPMHP 172
            D+  L P ND  +   E  SD+SLT P A  S+ +  GT   P
Sbjct: 595 PDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTP 635

BLAST of Lag0031493 vs. NCBI nr
Match: KAA0053466.1 (hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 4.4e-17
Identity = 57/163 (34.97%), Postives = 85/163 (52.15%), Query Frame = 0

Query: 11  QIFLPARTLNPQDHVISRYRSWWSEKYDNYLGDGVSKLVDNTTPSRTQPKPPTKNDSKFG 70
           +++LP R+L P  HV  R+  WW+ K+ NY  D    LV +  P  +QP+ P    S  G
Sbjct: 542 ELYLPVRSLEPCKHVTQRFTDWWTTKHMNYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLG 601

Query: 71  GKELRLLKVVRP--LDDSTEEESQNSTGDRHWKRAKRPRKYSDLADKSIKSASIASQTPD 130
           GKE+RL++ + P   D+  E ES ++  DRHW   KRP K + ++        +++    
Sbjct: 602 GKEIRLVEAMAPNLEDEVNEHESDSNKSDRHW---KRPLKKAKVSGDHPDGRGLSALEVP 661

Query: 131 DIENLLPSNDRAQEEEECSSDQSLTSPDAFVSSVKNFGTPMHP 172
           D+  L P ND  +   E  SD+SLT P A  S+ +  GT   P
Sbjct: 662 DVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSRTP 701

BLAST of Lag0031493 vs. NCBI nr
Match: KAA0050516.1 (hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 5.7e-17
Identity = 58/161 (36.02%), Postives = 87/161 (54.04%), Query Frame = 0

Query: 11  QIFLPARTLNPQDHVISRYRSWWSEKYDNYLGDGVSKLVDNTTPSRTQPKPPTKNDSKFG 70
           +++LPAR+L P  HV  ++  WW+ K+  Y  D    LV +  PS +QP+ P    S  G
Sbjct: 536 ELYLPARSLEPCKHVTQQFTDWWTTKHGTYFEDNRHHLVTSVIPSPSQPRLPKNRGSNLG 595

Query: 71  GKELRLLKVVRP-LDDSTEE---ESQNSTGDRHWKRAKRPRKYSDLADKSIKSASIASQT 130
           GKE+RL++ + P L++  +E   ES NS  DRHW   KRP K + ++        +++  
Sbjct: 596 GKEIRLVEAMAPNLEEEVKEHKDESNNSKSDRHW---KRPLKKAKVSGDHPNGRGLSALE 655

Query: 131 PDDIENLLPSNDRAQEEEECSSDQSLTSPDAFVSSVKNFGT 168
             D+  L P ND  +   E  SD+SLT P A  S+ +  GT
Sbjct: 656 VPDVPPLSPLNDHLEGLIEPDSDKSLTGPHAVDSAFEEVGT 693

BLAST of Lag0031493 vs. NCBI nr
Match: KAA0057575.1 (hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 7.5e-17
Identity = 56/159 (35.22%), Postives = 84/159 (52.83%), Query Frame = 0

Query: 11  QIFLPARTLNPQDHVISRYRSWWSEKYDNYLGDGVSKLVDNTTPSRTQPKPPTKNDSKFG 70
           +++LPAR+L P  HV  R+  WW+ K+  Y  D    LV +  P  +QP+ P    S  G
Sbjct: 332 ELYLPARSLEPCKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLG 391

Query: 71  GKELRLLKVVRP--LDDSTEEESQNSTGDRHWKRAKRPRKYSDLADKSIKSASIASQTPD 130
           GKE+RL++ + P   D+  E ES ++  DRHW   KRP K + ++        +++    
Sbjct: 392 GKEIRLVEAMAPNLEDEVNEHESDSNKSDRHW---KRPLKKTKVSGDHPDGRGLSALEVP 451

Query: 131 DIENLLPSNDRAQEEEECSSDQSLTSPDAFVSSVKNFGT 168
           D+  L P ND  +   E  SD+SLT P A  S+ +  GT
Sbjct: 452 DVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGT 487

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0041618.16.7e-1835.37hypothetical protein E6C27_scaffold93G00910 [Cucumis melo var. makuwa][more]
TYK19639.14.4e-1734.76hypothetical protein E5676_scaffold242G00260 [Cucumis melo var. makuwa][more]
KAA0053466.14.4e-1734.97hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa][more]
KAA0050516.15.7e-1736.02hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa][more]
KAA0057575.17.5e-1735.22hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 147..161
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..176

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0031493.1Lag0031493.1mRNA