Lag0031488 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0031488
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDynein light chain
Locationchr11: 9140963 .. 9141348 (+)
RNA-Seq ExpressionLag0031488
SyntenyLag0031488
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAACGATGCGAAGAGAAGCATTCAAGGGAATCTAATGGTGAAATCTGTATCGGAAGATCGGAAACCGCCGGCCGCCGGCAAGAAAATTGTCATTAAGAGTGCCGATATGTTTGGTGATGTGCAGAAGGAGGCTGTTGATGTTGCCATAGCTGTTAGCTCTCTTTTGTCAATCGCTATTCTTCTAATTTCGACTTCGAATTCCATTTTTGAACTGTTGTTTTTTTCTTCTTCTTGTGATCCTCGTTTTATTCGGGATTTTGGTTTCAGGCATTTGAAAAGCATAGTGTAGAGAAGGATGTAGCGGAGTATATTAAGAAAGAGTTCGATAAGAGGCATGGACCGACCTGGCATTGCATTGTGGGCCGTAATTTTGGTAACTGA

mRNA sequence

ATGAGCAACGATGCGAAGAGAAGCATTCAAGGGAATCTAATGGTGAAATCTGTATCGGAAGATCGGAAACCGCCGGCCGCCGGCAAGAAAATTGTCATTAAGAGTGCCGATATGTTTGGTGATGTGCAGAAGGAGGCTGTTGATGTTGCCATAGCTGCATTTGAAAAGCATAGTGTAGAGAAGGATGTAGCGGAGTATATTAAGAAAGAGTTCGATAAGAGGCATGGACCGACCTGGCATTGCATTGTGGGCCGTAATTTTGGTAACTGA

Coding sequence (CDS)

ATGAGCAACGATGCGAAGAGAAGCATTCAAGGGAATCTAATGGTGAAATCTGTATCGGAAGATCGGAAACCGCCGGCCGCCGGCAAGAAAATTGTCATTAAGAGTGCCGATATGTTTGGTGATGTGCAGAAGGAGGCTGTTGATGTTGCCATAGCTGCATTTGAAAAGCATAGTGTAGAGAAGGATGTAGCGGAGTATATTAAGAAAGAGTTCGATAAGAGGCATGGACCGACCTGGCATTGCATTGTGGGCCGTAATTTTGGTAACTGA

Protein sequence

MSNDAKRSIQGNLMVKSVSEDRKPPAAGKKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN
Homology
[Close]
BLAST of Lag0031488 vs. NCBI nr
Match: XP_008458417.1 (PREDICTED: dynein light chain 1, cytoplasmic [Cucumis melo])

HSP 1 Score: 166.4 bits (420), Expect = 1.1e-37
Identity = 84/92 (91.30%), Postives = 87/92 (94.57%), Query Frame = 0 

Query: 1  MSNDAKRSIQGNLMVKSVSEDRKPP---AAGKKIVIKSADMFGDVQKEAVDVAIAAFEKH 60
          MSNDAKRSIQGNLMVKSVSEDRKPP   A GKKIVIKSADMFGDVQKEA+DVAIAAFEKH
Sbjct: 1  MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKH 60

Query: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN 90
          SVEKD+AE IKKEFDKRHGPTWHCIVGRNFG+
Sbjct: 61 SVEKDIAECIKKEFDKRHGPTWHCIVGRNFGS 92

[Close]
BLAST of Lag0031488 vs. NCBI nr
Match: XP_022959519.1 (dynein light chain 1, cytoplasmic-like [Cucurbita moschata] >XP_023547610.1 dynein light chain 1, cytoplasmic-like [Cucurbita pepo subsp. pepo] >KAG6575076.1 Dynein light chain 1, cytoplasmic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.4 bits (420), Expect = 1.1e-37
Identity = 85/92 (92.39%), Postives = 87/92 (94.57%), Query Frame = 0 

Query: 1  MSNDAKRSIQGNLMVKSVSEDRKPPA---AGKKIVIKSADMFGDVQKEAVDVAIAAFEKH 60
          MSNDAKRSIQGNLMVKSVSEDRKP A    GKKIVIKSADMFGDVQKEA+DVAIAAFEKH
Sbjct: 1  MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKH 60

Query: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN 90
          SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG+
Sbjct: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGS 92

[Close]
BLAST of Lag0031488 vs. NCBI nr
Match: KAG7013650.1 (Dynein light chain 1, cytoplasmic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.0 bits (419), Expect = 1.5e-37
Identity = 85/91 (93.41%), Postives = 86/91 (94.51%), Query Frame = 0 

Query: 1  MSNDAKRSIQGNLMVKSVSEDRKPPA---AGKKIVIKSADMFGDVQKEAVDVAIAAFEKH 60
          MSNDAKRSIQGNLMVKSVSEDRKP A    GKKIVIKSADMFGDVQKEA+DVAIAAFEKH
Sbjct: 1  MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKH 60

Query: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG 89
          SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG
Sbjct: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG 91

[Close]
BLAST of Lag0031488 vs. NCBI nr
Match: XP_023006429.1 (dynein light chain 1, cytoplasmic [Cucurbita maxima])

HSP 1 Score: 165.6 bits (418), Expect = 1.9e-37
Identity = 84/92 (91.30%), Postives = 86/92 (93.48%), Query Frame = 0 

Query: 1  MSNDAKRSIQGNLMVKSVSEDRKP---PAAGKKIVIKSADMFGDVQKEAVDVAIAAFEKH 60
          MSNDAKRSIQGNLMVKSVSEDRKP      GKKIVIKSADMFGDVQKEA+DVAIAAFEKH
Sbjct: 1  MSNDAKRSIQGNLMVKSVSEDRKPLVMATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKH 60

Query: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN 90
          SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG+
Sbjct: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGS 92

[Close]
BLAST of Lag0031488 vs. NCBI nr
Match: XP_038906782.1 (dynein light chain 1, cytoplasmic-like [Benincasa hispida])

HSP 1 Score: 164.9 bits (416), Expect = 3.3e-37
Identity = 83/92 (90.22%), Postives = 87/92 (94.57%), Query Frame = 0 

Query: 1  MSNDAKRSIQGNLMVKSVSEDRKPPA---AGKKIVIKSADMFGDVQKEAVDVAIAAFEKH 60
          MSNDAKRSIQGNLMVKSVSEDRKPPA    GKKIVIKSADMFGDVQKEA++VAIAAFEKH
Sbjct: 1  MSNDAKRSIQGNLMVKSVSEDRKPPAVATTGKKIVIKSADMFGDVQKEAIEVAIAAFEKH 60

Query: 61 SVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN 90
          SVEKD+AE IKKEFDKRHGPTWHCIVGRNFG+
Sbjct: 61 SVEKDIAECIKKEFDKRHGPTWHCIVGRNFGS 92

[Close]
BLAST of Lag0031488 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.9e-18
Identity = 39/61 (63.93%), Postives = 52/61 (85.25%), Query Frame = 0 

Query: 29 KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG 88
          +K VIK+ADM  D+Q++A+D A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFG
Sbjct: 4  RKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 89 N 90
          +
Sbjct: 64 S 64

[Close]
BLAST of Lag0031488 vs. ExPASy Swiss-Prot
Match: Q3MHR3 (Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.9e-18
Identity = 40/61 (65.57%), Postives = 52/61 (85.25%), Query Frame = 0 

Query: 29 KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG 88
          +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFG
Sbjct: 4  RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 89 N 90
          +
Sbjct: 64 S 64

[Close]
BLAST of Lag0031488 vs. ExPASy Swiss-Prot
Match: Q96FJ2 (Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.9e-18
Identity = 40/61 (65.57%), Postives = 52/61 (85.25%), Query Frame = 0 

Query: 29 KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG 88
          +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFG
Sbjct: 4  RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 89 N 90
          +
Sbjct: 64 S 64

[Close]
BLAST of Lag0031488 vs. ExPASy Swiss-Prot
Match: Q9D0M5 (Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.9e-18
Identity = 40/61 (65.57%), Postives = 52/61 (85.25%), Query Frame = 0 

Query: 29 KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG 88
          +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFG
Sbjct: 4  RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 89 N 90
          +
Sbjct: 64 S 64

[Close]
BLAST of Lag0031488 vs. ExPASy Swiss-Prot
Match: Q78P75 (Dynein light chain 2, cytoplasmic OS=Rattus norvegicus OX=10116 GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.9e-18
Identity = 40/61 (65.57%), Postives = 52/61 (85.25%), Query Frame = 0 

Query: 29 KKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG 88
          +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFG
Sbjct: 4  RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 89 N 90
          +
Sbjct: 64 S 64

The following BLAST results are available for this feature:
BLAST of Lag0031488 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008458417.11.1e-3791.30PREDICTED: dynein light chain 1, cytoplasmic [Cucumis melo][more]
XP_022959519.11.1e-3792.39dynein light chain 1, cytoplasmic-like [Cucurbita moschata] >XP_023547610.1 dyne... [more]
KAG7013650.11.5e-3793.41Dynein light chain 1, cytoplasmic [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023006429.11.9e-3791.30dynein light chain 1, cytoplasmic [Cucurbita maxima][more]
XP_038906782.13.3e-3790.22dynein light chain 1, cytoplasmic-like [Benincasa hispida][more]
BLAST of Lag0031488 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q227997.9e-1863.93Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=... [more]
Q3MHR37.9e-1865.57Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1[more]
Q96FJ27.9e-1865.57Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1[more]
Q9D0M57.9e-1865.57Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1[more]
Q78P757.9e-1865.57Dynein light chain 2, cytoplasmic OS=Rattus norvegicus OX=10116 GN=Dynll2 PE=1 S... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001372Dynein light chain, type 1/2SMARTSM01375Dynein_light_2coord: 26..89
e-value: 1.4E-21
score: 87.6
IPR001372Dynein light chain, type 1/2PFAMPF01221Dynein_lightcoord: 30..88
e-value: 3.4E-22
score: 78.6
IPR001372Dynein light chain, type 1/2PANTHERPTHR11886DYNEIN LIGHT CHAINcoord: 3..88
IPR037177Dynein light chain superfamilyGENE3D3.30.740.10Protein Inhibitor Of Neuronal Nitric Oxide Synthase;coord: 27..89
e-value: 1.0E-24
score: 88.5
IPR037177Dynein light chain superfamilySUPERFAMILY54648DLCcoord: 26..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availablePANTHERPTHR11886:SF35DYNEIN LIGHT CHAIN 2, CYTOPLASMICcoord: 3..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0031488.1Lag0031488.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005737 cytoplasm
cellular_component GO:0030286 dynein complex
cellular_component GO:0005874 microtubule
molecular_function GO:0045505 dynein intermediate chain binding
molecular_function GO:0051959 dynein light intermediate chain binding