Lag0031487 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0031487
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDomain of unknown function (DUF303)
Locationchr11: 9094245 .. 9095298 (+)
RNA-Seq ExpressionLag0031487
SyntenyLag0031487
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGAGGCAAGGATCAGCCAACAAACAAAAGAGAAAGGGTGAGAAAAGTTTCAGAGAGAGAGTAGTTGTGTCTGTGCAAATAGGCACAGAGGAAAAGTTACAACTTTTTTTAGACAAGACAAAGTAGCTTTCAATCCACCTAAACTTTTCTTCTGTGTCTACTTGCACAGACACAAATGGTCAAAATGGCTTTGTTGAGATTGTCTATCTTGTTATGTATGATGCTATTTGGCCCTTCCCTTTCAGGGGCTACTTCTCCGAAGAACATATTTATCCTCGCCGGTCAGAGCAACATGGCTGGCCGAGGTGGGGTTGAGAAAGATTAATCGGGACACCTTGTGTGGGATGGGTATGTCCCACCAGTGTGTCAACCTGATCCATCCATCCTACGATTAAACCCTAAGCGCAAATGGGAGGTAGCACGAGAGCCTATCCATGCAGGGATTGACCTCGGCAAGACCCCTGGGATTGGTCCGACAATGTCAATTGCTCGCCAGTTACAAGCAAAAGCTGGGCAAAAGGTAGGTGTTGTGGGTTTAGTTCCTTGTGCTAGAGGTGGCACTTTAATCGAACAATGGATTAAAAACCCTAGCAATCCTAATAAAACTTTTTACCAAAATTTCATTGAACGAATCAAAGCGTTAGATAAAGAAGGTGGGTGGTGCGTGCTCTTTTCTGATACTAAGGGGAAAGCGATGCAGCTATGAGTGACACTGCTCATAGATACAAAGACAACCTAAAGAAGTTCTTCACTGACATCCGCAATGATATAAAACCTAGATTTTTACCCATCATTATTGTTAAAATAGCCCTCTATGACTTTTTTTATGAAGCACGATACTCATGATTTGCCAACAGTGAGGGCAACGCAAGAAGCACTCCAACACGAGTTGCCGGATGTGGTGACCATCGACTCTTGGAAATTGCCTATAAACTTTACCACATACGAAGGCTTTAGCCTAGATCATGGTCATTTTAATACCGCCACTGAGATTGCTTTGGGTAAATGGTTGGCTGATACCTACCTCTCCCACTATGGATATTTACTTTAA

mRNA sequence

ATGCAGAGGCAAGGATCAGCCAACAAACAAAAGAGAAAGGGGGCTACTTCTCCGAAGAACATATTTATCCTCGCCGGTCAGAGCAACATGGCTGGCCGAGTGTGTCAACCTGATCCATCCATCCTACGATTAAACCCTAAGCGCAAATGGGAGGTAGCACGAGAGCCTATCCATGCAGGGATTGACCTCGGCAAGACCCCTGGGATTGGTCCGACAATGTCAATTGCTCGCCAGTTACAAGCAAAAGCTGGGCAAAAGCACGATACTCATGATTTGCCAACAGTGAGGGCAACGCAAGAAGCACTCCAACACGAGTTGCCGGATGTGGTGACCATCGACTCTTGGAAATTGCCTATAAACTTTACCACATACGAAGGCTTTAGCCTAGATCATGGTCATTTTAATACCGCCACTGAGATTGCTTTGGGTAAATGGTTGGCTGATACCTACCTCTCCCACTATGGATATTTACTTTAA

Coding sequence (CDS)

ATGCAGAGGCAAGGATCAGCCAACAAACAAAAGAGAAAGGGGGCTACTTCTCCGAAGAACATATTTATCCTCGCCGGTCAGAGCAACATGGCTGGCCGAGTGTGTCAACCTGATCCATCCATCCTACGATTAAACCCTAAGCGCAAATGGGAGGTAGCACGAGAGCCTATCCATGCAGGGATTGACCTCGGCAAGACCCCTGGGATTGGTCCGACAATGTCAATTGCTCGCCAGTTACAAGCAAAAGCTGGGCAAAAGCACGATACTCATGATTTGCCAACAGTGAGGGCAACGCAAGAAGCACTCCAACACGAGTTGCCGGATGTGGTGACCATCGACTCTTGGAAATTGCCTATAAACTTTACCACATACGAAGGCTTTAGCCTAGATCATGGTCATTTTAATACCGCCACTGAGATTGCTTTGGGTAAATGGTTGGCTGATACCTACCTCTCCCACTATGGATATTTACTTTAA

Protein sequence

MQRQGSANKQKRKGATSPKNIFILAGQSNMAGRVCQPDPSILRLNPKRKWEVAREPIHAGIDLGKTPGIGPTMSIARQLQAKAGQKHDTHDLPTVRATQEALQHELPDVVTIDSWKLPINFTTYEGFSLDHGHFNTATEIALGKWLADTYLSHYGYLL
Homology
BLAST of Lag0031487 vs. NCBI nr
Match: XP_023002177.1 (probable carbohydrate esterase At4g34215 [Cucurbita maxima] >XP_023002870.1 probable carbohydrate esterase At4g34215 [Cucurbita maxima] >XP_023002871.1 probable carbohydrate esterase At4g34215 [Cucurbita maxima])

HSP 1 Score: 195.7 bits (496), Expect = 3.1e-46
Identity = 113/267 (42.32%), Postives = 129/267 (48.31%), Query Frame = 0

Query: 15  ATSPKNIFILAGQSNMAGR-------------------VCQPDPSILRLNPKRKWEVARE 74
           ATSP NIFILAGQSNMAGR                    CQ DPSILRLNP R+WE+A+E
Sbjct: 22  ATSPTNIFILAGQSNMAGRGGVENNQKGKLEWDGKVPLECQSDPSILRLNPARQWEIAQE 81

Query: 75  PIHAGIDLGKTPGIGPTMSIARQLQAKAGQ------------------------------ 134
           P+H GID+GKTPGIGP +  A Q +AKAGQ                              
Sbjct: 82  PLHLGIDIGKTPGIGPGIPFAHQFKAKAGQKAGIVGLVPCARGGTLIEQWIKNPSNPSAT 141

Query: 135 ------------------------------------------------------------ 159
                                                                       
Sbjct: 142 FYQNFIERIKTSEKEGGVVRALFWYQGESDAAMSDTAHRYKDNLKKFITDIRNDIKPRFL 201

BLAST of Lag0031487 vs. NCBI nr
Match: XP_022973316.1 (probable carbohydrate esterase At4g34215 [Cucurbita maxima] >XP_022973317.1 probable carbohydrate esterase At4g34215 [Cucurbita maxima])

HSP 1 Score: 187.6 bits (475), Expect = 8.4e-44
Identity = 111/270 (41.11%), Postives = 129/270 (47.78%), Query Frame = 0

Query: 14  GATSPKNIFILAGQSNMAGR-------------------VCQPDPSILRLNPKRKWEVAR 73
           GATSP NIFILAGQSNMAGR                    CQ DPSILR NP+R+WE+A 
Sbjct: 21  GATSPTNIFILAGQSNMAGRGGVEKTPTGELVWDGKVPSECQSDPSILRFNPERQWEIAH 80

Query: 74  EPIHAGIDLG--KTPGIGPTMSIARQLQAKAGQ--------------------------- 133
           EP+H GID+G  KTPGIGP +  A QL+ KAGQ                           
Sbjct: 81  EPLHLGIDVGKTKTPGIGPGIPFAHQLKEKAGQKAGIVGLVPCARGGTLIEQWIKNPSNP 140

Query: 134 ------------------------------------------------------------ 159
                                                                       
Sbjct: 141 SATFYQNFIERIKTSEKEGGVVRALFWYQGESDAAMNDTAQRYKDNLKKFITDIRNDIKP 200

BLAST of Lag0031487 vs. NCBI nr
Match: XP_023536885.1 (probable carbohydrate esterase At4g34215 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023536886.1 probable carbohydrate esterase At4g34215 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.0 bits (471), Expect = 2.4e-43
Identity = 108/268 (40.30%), Postives = 125/268 (46.64%), Query Frame = 0

Query: 14  GATSPKNIFILAGQSNMAGR-------------------VCQPDPSILRLNPKRKWEVAR 73
           GATSP NIFILAGQSNMAGR                    CQ DPSILRLNP+R+WE+A 
Sbjct: 21  GATSPTNIFILAGQSNMAGRGGVEKIQNGKLVWDGKVPLECQSDPSILRLNPERQWEIAH 80

Query: 74  EPIHAGIDLGKTPGIGPTMSIARQLQAKAGQ----------------------------- 133
           EP+H GID+  TPGIGP +  A Q + KAGQ                             
Sbjct: 81  EPLHLGIDISHTPGIGPGIPFAHQFKEKAGQKAGTVGLVPCARGGTLIEQWIKNPSNPSA 140

Query: 134 ------------------------------------------------------------ 159
                                                                       
Sbjct: 141 TFYQNFIERIKTSEKEGGVVRALFWYQGESDAAMNDTAQRYKDNLKKFITDIRNDIKPRF 200

BLAST of Lag0031487 vs. NCBI nr
Match: KAG6585849.1 (putative carbohydrate esterase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 184.1 bits (466), Expect = 9.3e-43
Identity = 108/268 (40.30%), Postives = 126/268 (47.01%), Query Frame = 0

Query: 14  GATSPKNIFILAGQSNMAGR-------------------VCQPDPSILRLNPKRKWEVAR 73
           GATSP NIFILAGQSNMAGR                    CQ DPSILRLNP+R+WE+A 
Sbjct: 10  GATSPTNIFILAGQSNMAGRGGVEKIQNGKLVWDGKVPLECQSDPSILRLNPERQWEIAH 69

Query: 74  EPIHAGIDLGKTPGIGPTMSIARQLQAKAGQ----------------------------- 133
           EP+H GID+  TPGIGP +  A QL+ KAGQ                             
Sbjct: 70  EPLHLGIDISHTPGIGPGIPFAHQLKEKAGQKAGTVGLVPCARGGTLIEQWMKNPSNPSA 129

Query: 134 ------------------------------------------------------------ 159
                                                                       
Sbjct: 130 TFYQNFIERIKTSEKEGGVVRALFWYQGESDAAMNDTAQRYKDNLKKFITDIRNDIKPRF 189

BLAST of Lag0031487 vs. NCBI nr
Match: KAG6585825.1 (putative carbohydrate esterase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 184.1 bits (466), Expect = 9.3e-43
Identity = 108/268 (40.30%), Postives = 126/268 (47.01%), Query Frame = 0

Query: 14  GATSPKNIFILAGQSNMAGR-------------------VCQPDPSILRLNPKRKWEVAR 73
           GATSP NIFILAGQSNMAGR                    CQ DPSILRLNP+R+WE+A 
Sbjct: 10  GATSPTNIFILAGQSNMAGRGGVEKIQNGKLVWDGKVPLECQSDPSILRLNPERQWEIAH 69

Query: 74  EPIHAGIDLGKTPGIGPTMSIARQLQAKAGQ----------------------------- 133
           EP+H GID+  TPGIGP +  A QL+ KAGQ                             
Sbjct: 70  EPLHLGIDISHTPGIGPGIPFAHQLKEKAGQKAGIVGLVPCARGGTLIEQWIKNPSNPSA 129

Query: 134 ------------------------------------------------------------ 159
                                                                       
Sbjct: 130 TFYQNFIERIKTSEKEGGVVRALFWYQGESDAAMNDTAQRYKDNLKKFITDIRNDIKPRF 189

BLAST of Lag0031487 vs. ExPASy Swiss-Prot
Match: Q8L9J9 (Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana OX=3702 GN=At4g34215 PE=1 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 4.8e-10
Identity = 36/93 (38.71%), Postives = 48/93 (51.61%), Query Frame = 0

Query: 8   NKQKRKGATSPKNIFILAGQSNMAGR--------------------VCQPDPSILRLNPK 67
           +K + +    P  IFIL+GQSNMAGR                     C P+ SILRL+  
Sbjct: 11  DKPEIQSPIPPNQIFILSGQSNMAGRGGVFKDHHNNRWVWDKILPPECAPNSSILRLSAD 70

Query: 68  RKWEVAREPIHAGIDLGKTPGIGPTMSIARQLQ 81
            +WE A EP+H  ID GK  G+GP M+ A  ++
Sbjct: 71  LRWEEAHEPLHVDIDTGKVCGVGPGMAFANAVK 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023002177.13.1e-4642.32probable carbohydrate esterase At4g34215 [Cucurbita maxima] >XP_023002870.1 prob... [more]
XP_022973316.18.4e-4441.11probable carbohydrate esterase At4g34215 [Cucurbita maxima] >XP_022973317.1 prob... [more]
XP_023536885.12.4e-4340.30probable carbohydrate esterase At4g34215 isoform X1 [Cucurbita pepo subsp. pepo]... [more]
KAG6585849.19.3e-4340.30putative carbohydrate esterase, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG6585825.19.3e-4340.30putative carbohydrate esterase, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
Q8L9J94.8e-1038.71Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana OX=3702 GN=At4g... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005181Sialate O-acetylesterase domainPFAMPF03629SASAcoord: 19..82
e-value: 1.8E-17
score: 63.7
IPR036514SGNH hydrolase superfamilyGENE3D3.40.50.1110SGNH hydrolasecoord: 17..88
e-value: 2.6E-11
score: 45.8
NoneNo IPR availablePANTHERPTHR31988ESTERASE, PUTATIVE (DUF303)-RELATEDcoord: 86..154
NoneNo IPR availablePANTHERPTHR31988ESTERASE, PUTATIVE (DUF303)-RELATEDcoord: 15..82
NoneNo IPR availablePANTHERPTHR31988:SF19BNACNNG62850D PROTEINcoord: 86..154
coord: 15..82
NoneNo IPR availableSUPERFAMILY52266SGNH hydrolasecoord: 20..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0031487.1Lag0031487.1mRNA