Lag0031474 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0031474
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Katanin p80 WD40 repeat-containing subunit B1 homolog
Location	chr11: 8943277 .. 8946159 (+)
RNA-Seq Expression	Lag0031474
Synteny	Lag0031474

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGCATTCAAGATTTCATTCCTTCACAGGTATTCTCCCTGTACAAAAGCTTTCCTCACAGGTCTTCAATGGTAAACCCCATACCTCCCTGTACACTCAAGCTTTCTGAAATCTCCTTCCTCACTTTTCTCCGTATTCCCTCTGATTTCCCAAGAGTTCTCTCTGAGTTTCACTTCCAGAGATTCACACTCTCACTCACTCCCATGATTTTCTCTAACTGTCCCCCAATTACATGTACAGACATTTTCCAGCAGTTACACTGTAACTGGCAGTTACAACCCACTCTTCTACATGAGTTTACACTATTACCCTTACACTAATAACTATAAGGAAATAGTTACATGGGCAACAAAGGAATACAAAAGTGTTGGAGCTTTATAATTTCCAGCTCATTACATTCTTCTTCTTTTCCATCTTCTCCACCTTCTCCTTCCTTATTCTTCTTCTTCCTATGTCCGGCGACCGGCGACCGGCGACCACCGCTCGCCGCTGCCGCCGGCGACTTTTTTTTTTTTTTTTTTCCTTTTCTCTTCTTTCCTCTTTTTCTCTTCTTTCTTTTTCTCTTCTTTCTTCACTGATTTAAAAAAAAAAAAAGAGGAAGTGTAGCGTGTTGTGCTTTCTCTTGACTTGCTTGAAGCAAACTGATGAGGCTCTTTTCTGGTTTTCTTCTTTGCTTGTTTTTGTGTGTTTTTTATTTTTTTGCATCTTTGATCTGGATGCTGGAGGTTTCTTGATTAATATTTTTTTTTTGCTTTGGAAATTTTTGTTTGCAATGACGTTGTTTGTGGCTGGGAGCGGTGGTGGAAGAATATGTGGATTTTTCTTTTGAGATCTAAAGTGTTGTAAGTGGAGATCGTCGGTTCTTGGAAGTAGTTGATGAAGCAGTGTCACTAATTATTGAGCTATTCTCGGATTTAAATATTTTGGGAATGTGCACAGTGGAATGCCGCTGTTGAAATTCCAATTTCTAGGTTTTCTTCGCGTTCTGATGCTATTGTGGTCCTAAATTCCTGATTATACATGCCATGACTACCATACGGGCGTACAAGCTACGTATCCTTTCTCAATGTGTGGAGGTTCATCTAGGGATTTTAAATTTTCAAAGTGAAGTGTTGTTATTAAGACTTGATCTGCGTGTATTGCCGCGTTATTTTCACATTGTGATTTTCATCAGATCTCTGAGTGTGTGAGTCCGAGCGTTCTGTTTTTATTTCGAAGTATTTGAGTATATGGTCTGCCAATTAGAAATAGCCTTGGCTTACAATTTGAGGTCGAGGAAGGCTCCTACCTGTTTTCCTTCACAATTATTTATACAGAAGAATTTGTGGCTCATTCTTCCGCCGTCAATTGCCTGAAGATTGGGAGGAAGTCATCCCGTGTTCTTGTCACAGGGGGCGAAGACTTCAAAGTTAATCTCAGGGCTATTGGTAAACCCAATGCCATACTGGTATGTCTCAATTTCTATCTCTTGACTCTGGTTACAGTAGAATACAAAAGTTGTGTTCTATTAATTTGTTCTCAAGTTAACAAAAATGAGGTTTGACAAACCAATTATTTGATAGTTGGCAATCCTATACATTTTCGGTTTGTATTGGACTTCTTGTCCACGATATTCAAACATTCTCGCTTGAATCACTTGCATCTTGTTTTGTTATACATGTGGATTTTAAAAAAGAAAGAAGAGAAAAAGAAAGAAGAGAAAAGAAAAAAAAAAAAAAAAAAGGTCGCCGGCAGTAGGGGTGTTCATCTTCAGACTGAAAACCGACACGACCGACCGAAACCGACCGAACCGACGGCGATCGGTCGGTTAGCCGACCAAGTCGGTCGGTGTCGGTTCTTAAATTGGGGAGGTCGGTCGGTCGGTCGGTCGGCCAAACAATTTTACACATAACCGACCGACCGACCAACTGACTTTACACATAACCGACCGACCGCCCAATATATTTATATATAAGAAAATCATTTTAAAAAAAACACATAACTTACCGACCGACCGACCGATTTTACACATAACCGACCGACCGCTGTTCTTCATCTCAATTCTGATGATCTTAAAAAAAAACCGACCGAACCGACCGTTCGGTCGGTCGGCTGGCAGCACCCATCGAAAGTCGTCAGTTTCCAGATTTTTGGAAAACCGACCGACCGATGAACACCCCTAGCCGGCGGCGACGAGCAGTGGTCGCCGGTCGCCGGTAGGGATGGCAAAAATCCCAACGGGGCGGGGAATCCCCGGTTTGACCGGGTATAGGGGTCAAACCGGGGATCCATTTCGGGTCTGCGGTCGGGGACGGGGCGGGGATGGGGATGGTATCCCCGCCCCGTCCCCGTCCCCGACCCCGCCCCGAATAATTAGTTTTATTCATTTTTTTAAAAATATGTATTATATATATTATATTTACAATAATAATATTATTCTTATATTACCTATAAAATTCTATAAAGTTTTTTTTTTGTTTTTAATTCTTAAGTGTTGGTTTATTGTATTGTTTAGTTTATATTTTTCTTTTTCTTTTCTTTTTTACTTAATTTAAGTGTTTAAACTTCTAATAAAACATATCTAATGTTATAAAAATTAATTATTTAAATAAATAAATAAATATAATACTAATGTTAACATAAAAGTATGTATAATTTTAATATATATCTTAATTTTAAATCATTTTTGTTAAAAAATAATTTTAAAAAGAATAAAAAAAGCGGGGATTTTTCCCCACGGGGACCCGATCCCCGAATGGGGATTCTCCGACCCCAACCCCGACTCCCCGAAACGGGGAATGGGGCGGGGACGGGGATTAAAATTCCCCACGGGGACGGGGATGGGGAGTGCGTCCCCGGCCCCACCCCGCCCTGTTGCCATCCCTAGTCGCCGGACATAG

mRNA sequence

ATGAGAAGCATTCAAGATTTCATTCCTTCACAGGTATTCTCCCTGTACAAAAGCTTTCCTCACAGAAATAGCCTTGGCTTACAATTTGAGGTCGAGGAAGGCTCCTACCTGTTTTCCTTCACAATTATTTATACAGAAGAATTTGTGGCTCATTCTTCCGCCGTCAATTGCCTGAAGATTGGGAGGAAGTCATCCCGTGTTCTTGTCACAGGGGGCGAAGACTTCAAAGTTAATCTCAGGGCTATTGGTAAACCCAATGCCATACTGCCGGCGGCGACGAGCAGTGGTCGCCGGTCGCCGGTAGGGATGGCAAAAATCCCAACGGGGCGGGGAATCCCCGGTTTGACCGGGTATAGGGGTCAAACCGGGGATCCATTTCGGGTCTGCGGTCGGGGACGGGGCGGGGATGGGGATGCGGGGATTTTTCCCCACGGGGACCCGATCCCCGAATGGGGATTCTCCGACCCCAACCCCGACTCCCCGAAACGGGGAATGGGGCGGGGACGGGGATTAAAATTCCCCACGGGGACGGGGATGGGGAGTGCGTCCCCGGCCCCACCCCGCCCTGTTGCCATCCCTAGTCGCCGGACATAG

Coding sequence (CDS)

ATGAGAAGCATTCAAGATTTCATTCCTTCACAGGTATTCTCCCTGTACAAAAGCTTTCCTCACAGAAATAGCCTTGGCTTACAATTTGAGGTCGAGGAAGGCTCCTACCTGTTTTCCTTCACAATTATTTATACAGAAGAATTTGTGGCTCATTCTTCCGCCGTCAATTGCCTGAAGATTGGGAGGAAGTCATCCCGTGTTCTTGTCACAGGGGGCGAAGACTTCAAAGTTAATCTCAGGGCTATTGGTAAACCCAATGCCATACTGCCGGCGGCGACGAGCAGTGGTCGCCGGTCGCCGGTAGGGATGGCAAAAATCCCAACGGGGCGGGGAATCCCCGGTTTGACCGGGTATAGGGGTCAAACCGGGGATCCATTTCGGGTCTGCGGTCGGGGACGGGGCGGGGATGGGGATGCGGGGATTTTTCCCCACGGGGACCCGATCCCCGAATGGGGATTCTCCGACCCCAACCCCGACTCCCCGAAACGGGGAATGGGGCGGGGACGGGGATTAAAATTCCCCACGGGGACGGGGATGGGGAGTGCGTCCCCGGCCCCACCCCGCCCTGTTGCCATCCCTAGTCGCCGGACATAG

Protein sequence

MRSIQDFIPSQVFSLYKSFPHRNSLGLQFEVEEGSYLFSFTIIYTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAILPAATSSGRRSPVGMAKIPTGRGIPGLTGYRGQTGDPFRVCGRGRGGDGDAGIFPHGDPIPEWGFSDPNPDSPKRGMGRGRGLKFPTGTGMGSASPAPPRPVAIPSRRT

Homology

[Close]

BLAST of Lag0031474 vs. NCBI nr
Match: KAG7031884.1 (Katanin p80 WD40 repeat-containing subunit B1-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-17
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 33 EGSYLFSFTIIYTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL 90
          EGS+LF  TII TEEFVAHSS VNCLKIGRKSSRVLVTGGEDFKVNL AIGKPNAIL
Sbjct: 2  EGSFLFFLTIIQTEEFVAHSSTVNCLKIGRKSSRVLVTGGEDFKVNLWAIGKPNAIL 58

[Close]

BLAST of Lag0031474 vs. NCBI nr
Match: KAA0034099.1 (katanin p80 WD40 repeat-containing subunit B1-like protein isoform X1 [Cucumis melo var. makuwa] >TYK15820.1 katanin p80 WD40 repeat-containing subunit B1-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 1.9e-13
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 44 YTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL 90
          + EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNL AIGKPNAIL
Sbjct: 39 FLEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLWAIGKPNAIL 84

[Close]

BLAST of Lag0031474 vs. NCBI nr
Match: KAF3485869.1 (hypothetical protein F2Q69_00056502 [Brassica cretica])

HSP 1 Score: 86.7 bits (213), Expect = 2.5e-13
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 42 IIYTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL 90
          ++Y EEFVAHS+AVNCLKIGRKSSRVLVTGGED KVNL AIGKPNAIL
Sbjct: 15 VLYKEEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL 62

[Close]

BLAST of Lag0031474 vs. NCBI nr
Match: KAF2530359.1 (hypothetical protein F2Q70_00032460 [Brassica cretica])

HSP 1 Score: 86.7 bits (213), Expect = 2.5e-13
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 42 IIYTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL 90
          ++Y EEFVAHS+AVNCLKIGRKSSRVLVTGGED KVNL AIGKPNAIL
Sbjct: 15 VLYKEEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL 62

[Close]

BLAST of Lag0031474 vs. NCBI nr
Match: VDD39377.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-13
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 38 FSFTIIYTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL 90
          + FT +  EEFVAHS+AVNCLKIGRKSSRVLVTGGED KVNL AIGKPNAIL
Sbjct: 25 YPFTCLLFEEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL 76

[Close]

BLAST of Lag0031474 vs. ExPASy Swiss-Prot
Match: F4KB17 (Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-14
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 46 EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL 90
          +EFVAHS+AVNCLKIGRKSSRVLVTGGED KVNL AIGKPNAIL
Sbjct: 10 QEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL 53

[Close]

BLAST of Lag0031474 vs. ExPASy Swiss-Prot
Match: Q8H0T9 (Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 OS=Arabidopsis thaliana OX=3702 GN=KTN80.4 PE=1 SV=3)

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-14
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 46 EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL 90
          +EFVAHS+AVNCLKIGRKSSRVLVTGGED KVNL AIGKPNAIL
Sbjct: 10 QEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL 53

[Close]

BLAST of Lag0031474 vs. ExPASy Swiss-Prot
Match: F4HTH8 (Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2 OS=Arabidopsis thaliana OX=3702 GN=KTN80.2 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.0e-10
Identity = 27/44 (61.36%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 46 EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL 90
          +EF+AHS+ VNCL IG+K+SR+ +TGG+D+KVNL AIGKP +++
Sbjct: 9  QEFLAHSANVNCLSIGKKTSRLFITGGDDYKVNLWAIGKPTSLM 52

[Close]

BLAST of Lag0031474 vs. ExPASy Swiss-Prot
Match: O61585 (Katanin p80 WD40 repeat-containing subunit B1 OS=Strongylocentrotus purpuratus OX=7668 GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.9e-10
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 46  EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAILPAATSSGRRSPVGMAK 105
           +E VAHSS VNCL +G  S RV+VTGGED KVNL A+GK N I+   + SG  SPV   K
Sbjct: 10  QELVAHSSNVNCLALGPMSGRVMVTGGEDKKVNLWAVGKQNCII---SLSGHTSPVDSVK 66

[Close]

BLAST of Lag0031474 vs. ExPASy Swiss-Prot
Match: A0A1P8AW69 (Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.1 OS=Arabidopsis thaliana OX=3702 GN=KTN80.1 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.1e-09
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 46  EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAILPAATSSGRRSPV 102
           +EFVAHS  VNCL IG+K+SR+L+TGG+D+KVNL +IGK  + +   +  G  SPV
Sbjct: 9   QEFVAHSGNVNCLSIGKKTSRLLLTGGDDYKVNLWSIGKTTSPM---SLCGHTSPV 61

[Close]

BLAST of Lag0031474 vs. ExPASy TrEMBL
Match: A0A5D3CWT2 (Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G003250 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.3e-14
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 44 YTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL 90
          + EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNL AIGKPNAIL
Sbjct: 39 FLEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLWAIGKPNAIL 84

[Close]

BLAST of Lag0031474 vs. ExPASy TrEMBL
Match: A0A3P6E5I1 (Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Brassica oleracea OX=3712 GN=BOLC7T44937H PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-13
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 38 FSFTIIYTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL 90
          + FT +  EEFVAHS+AVNCLKIGRKSSRVLVTGGED KVNL AIGKPNAIL
Sbjct: 25 YPFTCLLFEEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL 76

[Close]

BLAST of Lag0031474 vs. ExPASy TrEMBL
Match: D8TCP0 (Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Selaginella moellendorffii OX=88036 GN=SELMODRAFT_431447 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-13
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 46  EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAILPAATSSGRRSPV 102
           EEFVAHSS VNCLKIGRK+SRVLVTGG+D KVN+ AIGKPNAIL A + +G  SPV
Sbjct: 19  EEFVAHSSQVNCLKIGRKTSRVLVTGGDDHKVNMWAIGKPNAILIACSLAGHSSPV 74

[Close]

BLAST of Lag0031474 vs. ExPASy TrEMBL
Match: A0A2Z6P2N2 (WD_REPEATS_REGION domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_228030 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.1e-13
Identity = 45/73 (61.64%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 37  LFSFTIIYTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAILPAATSSG 96
           L    ++  EEFVAH+SAVNCLKIGRKSSRVLVTGGED KVNL AIGKPNAIL    +  
Sbjct: 10  LLGLDVLCLEEFVAHASAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILGFEPAIP 69

Query: 97  RRSPVGMAKIPTG 110
             S + +  +P G
Sbjct: 70  HLSALSVCVLPLG 82

[Close]

BLAST of Lag0031474 vs. ExPASy TrEMBL
Match: A0A7J8RJU7 (Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Gossypium davidsonii OX=34287 GN=Godav_014334 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.1e-13
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 37 LFSFTIIYTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL 90
          +F F +   EEFVAHSS+VNCLKIGRKSSRVLVTGGED KVNL AIGKPNAIL
Sbjct: 22 MFQFAVPDLEEFVAHSSSVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL 74

The following BLAST results are available for this feature:

BLAST of Lag0031474 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031884.1	1.3e-17	89.47	Katanin p80 WD40 repeat-containing subunit B1-like protein, partial [Cucurbita a...	[more]
KAA0034099.1	1.9e-13	93.48	katanin p80 WD40 repeat-containing subunit B1-like protein isoform X1 [Cucumis m...	[more]
KAF3485869.1	2.5e-13	87.50	hypothetical protein F2Q69_00056502 [Brassica cretica]	[more]
KAF2530359.1	2.5e-13	87.50	hypothetical protein F2Q70_00032460 [Brassica cretica]	[more]
VDD39377.1	3.3e-13	82.69	unnamed protein product [Brassica oleracea]	[more]

BLAST of Lag0031474 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4KB17	1.4e-14	90.91	Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis tha...	[more]
Q8H0T9	1.4e-14	90.91	Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 OS=Arabidopsis tha...	[more]
F4HTH8	6.0e-10	61.36	Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2 OS=Arabidopsis tha...	[more]
O61585	7.9e-10	58.33	Katanin p80 WD40 repeat-containing subunit B1 OS=Strongylocentrotus purpuratus O...	[more]
A0A1P8AW69	5.1e-09	55.36	Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.1 OS=Arabidopsis tha...	[more]

BLAST of Lag0031474 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CWT2	9.3e-14	93.48	Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Cucumis melo var. makuw...	[more]
A0A3P6E5I1	1.6e-13	82.69	Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Brassica oleracea OX=37...	[more]
D8TCP0	1.6e-13	76.79	Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Selaginella moellendorf...	[more]
A0A2Z6P2N2	2.1e-13	61.64	WD_REPEATS_REGION domain-containing protein OS=Trifolium subterraneum OX=3900 GN...	[more]
A0A7J8RJU7	2.1e-13	81.13	Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Gossypium davidsonii OX...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..197
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..119
None	No IPR available	PANTHER	PTHR19845	KATANIN P80 SUBUNIT	coord: 44..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0031474.1	Lag0031474.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007019	microtubule depolymerization
biological_process	GO:0051013	microtubule severing
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0008352	katanin complex
cellular_component	GO:0005874	microtubule
molecular_function	GO:0008017	microtubule binding